Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 9.6e-201 703.4 375 100.0
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 6.3e-184 647.5 375 93.3
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 1.1e-92 344.4 289 69.2
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.4e-90 337.4 410 53.7
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.6e-89 333.2 413 53.3
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 6.9e-74 282.0 388 49.2
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.6e-73 280.0 385 49.1
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 1.0e-72 278.1 387 50.6
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 5.0e-72 275.8 395 46.8
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 1.1e-71 274.6 379 49.3
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.9e-71 273.9 402 46.8
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 2.5e-71 273.5 382 50.3
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 2.1e-70 270.4 425 45.9
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 2.7e-70 270.0 380 48.7
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 3.5e-70 269.6 413 44.8
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 6.1e-70 268.9 415 45.1
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.3e-69 267.7 398 46.2
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 5.1e-69 265.8 423 45.9
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 6.7e-69 265.4 387 46.0
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 2.5e-68 263.5 377 48.3
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 2.5e-68 263.5 383 46.7
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 7.4e-68 261.9 395 46.3
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.8e-67 260.0 412 44.2
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 2.8e-67 260.0 387 47.3
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 3.7e-67 259.6 431 43.6
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 6.3e-67 258.8 388 47.2
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 8.2e-67 258.5 407 44.7
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.1e-66 258.1 436 44.0
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 5.3e-66 255.8 388 44.1
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 6.9e-66 255.4 386 46.4
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 6.9e-66 255.4 406 45.1
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 2.6e-65 253.4 386 45.9
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 2.6e-65 253.4 451 41.9
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 3.4e-65 253.1 425 42.6
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.4e-65 253.1 403 43.9
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 7.7e-65 251.9 404 43.8
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 2.9e-64 250.0 401 44.1
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 3.8e-64 249.6 428 43.7
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 1.1e-63 248.1 386 45.9
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 1.4e-63 247.7 213 65.7
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 4.2e-63 246.1 402 44.5
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 9.4e-63 245.0 205 64.9
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 2.1e-62 243.8 392 44.4
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.9e-62 241.9 367 43.3
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 6.7e-61 238.8 374 43.9
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 5.7e-60 235.7 382 43.5
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.3e-59 234.6 419 41.1
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 2.2e-59 233.8 419 41.8
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 2.8e-59 233.4 337 47.5
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.8e-59 233.4 434 38.9
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 3.7e-59 233.0 374 44.9
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 3.7e-59 233.0 210 60.0
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 8.2e-59 231.9 373 42.4
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 4.1e-58 229.6 316 49.1
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 5.3e-58 229.2 433 38.3
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 2.6e-57 226.9 401 40.6
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 2.6e-57 226.9 369 43.6
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 4.5e-57 226.1 410 42.2
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 4.5e-57 226.1 367 43.6
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 4.5e-57 226.1 408 41.7
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 7.7e-57 225.3 413 41.2
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.7e-57 225.3 279 48.7
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 7.7e-57 225.3 364 44.5
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.7e-56 224.2 378 42.3
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 2.2e-56 223.8 384 41.7
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 2.9e-56 223.4 384 41.9
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 3.8e-56 223.0 409 41.6
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 5.0e-56 222.6 393 40.2
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 5.0e-56 222.6 427 38.4
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 8.5e-56 221.9 579 34.5
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 2.5e-55 220.3 409 38.9
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.6e-54 217.6 201 60.2
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 2.7e-54 216.9 242 53.3
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 3.6e-54 216.5 280 48.2
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 5.1e-53 212.6 370 42.7
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 6.7e-53 212.2 350 42.0
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 1.5e-52 211.1 372 38.2
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 2.0e-52 210.7 402 38.1
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.6e-52 210.3 421 38.5
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.8e-51 206.8 431 40.1
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.8e-51 206.8 432 38.0
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 3.7e-51 206.5 428 39.0
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.1e-50 203.4 377 40.8
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 4.1e-50 203.0 161 64.0
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.2e-48 197.2 376 42.0
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 8.5e-48 195.3 210 53.8
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 4.2e-47 193.0 237 49.4
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 9.4e-47 191.8 388 39.7
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 2.1e-46 190.7 336 42.6
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 8.0e-46 188.7 314 43.0
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 1.8e-45 187.6 375 39.5
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 5.2e-45 186.0 387 38.8
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.5e-44 184.5 380 40.5
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 2.6e-41 173.7 133 65.4
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 5.0e-40 169.5 386 37.3
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 8.5e-40 168.7 306 41.5
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 4.2e-39 166.4 373 35.7
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 1.6e-38 164.5 501 31.1
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 3.6e-38 163.3 373 36.5
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 6.1e-38 162.5 153 59.5
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 8.0e-38 162.2 160 56.2
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 1.0e-37 161.8 371 35.6
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 1.4e-37 161.4 371 35.3
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 4.0e-37 159.8 371 35.3
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 9.8e-36 155.2 206 45.6
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.3e-35 154.8 273 36.6
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.6e-30 136.7 140 59.3
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 6.1e-30 136.0 158 47.5
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 2.8e-27 127.1 366 35.0
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 6.3e-27 125.9 126 51.6
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 6.3e-27 125.9 308 38.0
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 4.1e-26 123.2 237 38.4
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 2.7e-25 120.6 310 34.2
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.3e-24 118.2 159 42.8
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 2.3e-24 117.5 374 32.6
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.3e-23 113.6 203 43.3
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 1.4e-21 108.2 107 50.5
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.8e-21 107.8 340 30.3
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 1.2e-20 105.1 75 69.3
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 9.8e-20 102.1 82 64.6
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.6e-17 94.7 194 35.1
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 2.0e-17 94.4 83 54.2
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.5e-17 93.6 139 46.0
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 7.8e-17 92.4 246 37.8
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 2.1e-14 84.3 68 63.2
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 4.0e-13 80.1 235 33.6
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 5.2e-13 79.7 305 30.8
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.5e-12 78.2 106 40.6
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.8e-12 76.3 116 39.7
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 7.5e-12 75.9 109 41.3
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 8.3e-11 72.4 45 68.9
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 1.6e-09 68.2 308 27.6
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 2.0e-09 67.8 292 30.8
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 6.0e-09 66.2 294 27.6
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 7.3e-07 59.3 86 37.2
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 1.6e-06 58.2 55 56.4
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 3.6e-06 57.0 83 37.3
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 4.7e-06 56.6 56 53.6
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 4.7e-06 56.6 83 36.1
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 8.1e-06 55.8 83 36.1


User provided reference genes

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