Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 9.7e-153 543.5 286 100.0
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 5.5e-140 501.1 287 93.4
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.7e-104 383.3 287 72.8
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 1.7e-93 346.7 286 67.1
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 1.1e-92 344.0 288 67.4
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 3.4e-89 332.4 288 64.2
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.7e-88 330.1 292 64.7
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 2.2e-88 329.7 293 64.8
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 8.4e-88 327.8 293 64.8
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 2.1e-86 323.2 293 63.8
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 3.5e-86 322.4 287 62.7
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 1.3e-85 320.5 296 63.9
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 3.9e-85 318.9 288 63.5
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 5.6e-84 315.1 284 63.7
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 7.3e-84 314.7 299 62.9
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 7.3e-84 314.7 285 63.9
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 9.6e-84 314.3 292 61.0
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 2.8e-83 312.8 289 61.6
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 3.6e-83 312.4 291 59.8
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 4.8e-83 312.0 291 59.8
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 6.2e-83 311.6 285 63.2
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 6.2e-83 311.6 293 59.7
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 8.1e-83 311.2 290 61.7
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.1e-82 310.8 282 63.5
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 1.1e-82 310.8 294 59.5
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 4.4e-81 305.4 298 60.7
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 9.9e-81 304.3 288 62.5
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 9.9e-81 304.3 288 60.8
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 1.3e-80 303.9 290 60.0
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 1.7e-80 303.5 297 59.6
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 3.8e-80 302.4 289 61.6
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 3.8e-80 302.4 288 61.8
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 8.4e-80 301.2 287 59.2
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 1.1e-79 300.8 287 59.6
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 1.9e-79 300.1 294 58.2
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 7.1e-79 298.1 283 60.4
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 1.6e-78 297.0 290 59.0
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 2.1e-78 296.6 288 60.1
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 3.9e-77 292.4 288 59.7
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 1.1e-76 290.8 300 59.0
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.1e-76 290.8 303 58.7
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.5e-76 290.4 310 57.7
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.5e-76 290.4 304 58.2
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.5e-76 290.4 304 58.2
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 2.5e-76 289.7 303 57.8
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 2.8e-75 286.2 288 56.9
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 6.2e-75 285.0 288 58.3
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 8.1e-75 284.6 292 59.9
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.4e-74 283.9 315 57.1
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 2.4e-74 283.1 288 58.3
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 2.4e-74 283.1 287 58.2
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 2.4e-74 283.1 292 58.6
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 5.3e-74 282.0 295 55.3
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 9.0e-74 281.2 290 59.3
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 3.4e-73 279.3 290 58.3
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 3.4e-73 279.3 360 49.2
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 7.6e-73 278.1 329 52.9
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 7.6e-73 278.1 288 57.6
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 9.9e-73 277.7 291 55.3
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 9.9e-73 277.7 356 49.7
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 1.3e-72 277.3 292 56.8
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 2.2e-72 276.6 294 57.1
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 2.9e-72 276.2 291 57.0
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 4.9e-72 275.4 330 51.2
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 6.4e-72 275.0 287 56.8
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 1.1e-71 274.2 287 55.7
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 1.4e-71 273.9 290 56.6
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 1.4e-71 273.9 289 57.4
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 2.4e-71 273.1 287 56.8
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 1.6e-70 270.4 291 55.0
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 6.0e-70 268.5 281 55.9
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 1.0e-69 267.7 287 55.7
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 1.8e-69 266.9 241 63.5
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 3.0e-69 266.2 296 54.7
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 3.0e-69 266.2 290 54.1
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 3.9e-69 265.8 299 54.2
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 5.1e-69 265.4 286 56.3
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 6.7e-69 265.0 286 55.2
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 6.7e-69 265.0 287 55.1
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 1.1e-68 264.2 284 55.3
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 5.6e-68 261.9 295 54.9
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 1.3e-67 260.8 295 55.3
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.3e-67 260.8 286 55.2
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 1.6e-67 260.4 287 56.4
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 2.8e-67 259.6 287 54.7
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 1.8e-66 256.9 288 52.8
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 6.9e-66 255.0 292 53.4
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 3.4e-65 252.7 287 53.0
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 5.8e-65 251.9 287 53.7
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 7.6e-65 251.5 190 70.0
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 1.7e-64 250.4 284 52.5
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 3.8e-64 249.2 282 56.0
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 8.4e-64 248.1 288 51.7
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 3.2e-63 246.1 283 49.8
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 7.1e-63 245.0 286 51.0
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 4.6e-62 242.3 283 50.5
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 1.0e-61 241.1 284 51.4
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 2.3e-61 240.0 289 50.5
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 8.7e-61 238.0 284 52.1
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 1.1e-60 237.7 284 52.1
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 3.3e-60 236.1 234 57.3
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 3.3e-60 236.1 287 50.2
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 3.3e-60 236.1 284 52.8
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 3.3e-60 236.1 289 46.7
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 7.4e-60 235.0 283 50.9
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 1.6e-59 233.8 284 50.4
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 3.7e-59 232.6 288 50.0
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.8e-58 230.3 177 68.9
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 2.4e-58 229.9 482 37.3
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 3.1e-58 229.6 286 51.4
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 3.4e-57 226.1 286 48.6
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 5.9e-57 225.3 298 50.3
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 1.1e-55 221.1 284 49.6
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 1.1e-55 221.1 284 49.6
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 1.1e-55 221.1 284 49.6
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 9.3e-55 218.0 283 49.1
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 9.3e-55 218.0 513 35.1
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 7.9e-54 214.9 285 49.1
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 2.8e-51 206.5 282 47.2
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 3.4e-49 199.5 286 46.5
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 2.9e-48 196.4 278 48.6
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 8.5e-48 194.9 286 45.8
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.4e-45 187.6 176 61.9
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 4.8e-43 179.1 292 42.1
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 8.2e-43 178.3 273 43.6
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 8.2e-43 178.3 233 48.5
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 4.2e-39 166.0 286 43.0
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 7.9e-38 161.8 128 71.1
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 8.8e-37 158.3 175 53.1
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 9.7e-36 154.8 180 51.1
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 1.3e-35 154.5 291 40.9
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 2.4e-34 150.2 286 38.5
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 6.5e-32 142.1 176 48.9
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 2.7e-30 136.7 273 39.6
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 5.2e-29 132.5 272 36.8
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 1.2e-28 131.3 287 40.4
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 3.3e-28 129.8 280 35.7
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 9.7e-28 128.3 93 69.9
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 2.8e-27 126.7 114 64.0
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 4.2e-23 112.8 174 43.1
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 8.0e-22 108.6 104 61.5
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 1.4e-18 97.8 287 32.1
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 2.7e-17 93.6 150 37.3
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.1e-15 88.2 153 40.5
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 4.7e-14 82.8 163 38.7
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.0e-13 80.1 153 35.9
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.5e-12 77.8 163 36.8
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.4e-12 76.3 153 34.6
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 5.7e-12 75.9 156 37.8
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.3e-11 74.7 153 36.6
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 2.2e-11 73.9 154 35.1
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 4.9e-11 72.8 159 35.8
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 1.1e-10 71.6 167 33.5
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.4e-10 70.5 76 44.7
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.1e-10 69.7 153 34.0
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 9.2e-10 68.6 155 34.8
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.0e-09 67.4 80 43.8
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 5.9e-09 65.9 190 28.9
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.0e-08 65.1 155 34.2
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.7e-08 64.3 160 30.6
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 2.9e-08 63.5 95 46.3
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 2.9e-08 63.5 95 46.3
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 8.6e-08 62.0 211 25.6
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.5e-07 61.2 174 32.8
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.9e-07 60.8 155 30.3
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.5e-07 60.5 86 41.9
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.5e-07 60.5 167 31.7
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 3.3e-07 60.1 82 41.5
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 3.3e-07 60.1 98 44.9
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 4.3e-07 59.7 86 43.0
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 5.6e-07 59.3 155 29.7
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 7.3e-07 58.9 186 28.5
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 9.5e-07 58.5 165 29.7
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 1.6e-06 57.8 84 39.3
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 2.1e-06 57.4 169 30.2
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 2.1e-06 57.4 103 36.9
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 2.1e-06 57.4 164 32.3
Sabra12G0063200 Salix brachista HOM05D004891 ORTHO05D005997 2.8e-06 57.0 93 45.2
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 3.6e-06 56.6 106 34.9
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 6.1e-06 55.8 83 39.8
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 6.1e-06 55.8 157 31.8
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 8.0e-06 55.5 81 38.3


User provided reference genes

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