Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 3.5e-152 541.6 268 100.0
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 5.4e-105 384.8 208 90.9
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 2.4e-89 332.8 255 66.3
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 5.4e-89 331.6 209 76.6
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 1.3e-87 327.0 184 84.2
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 5.1e-87 325.1 229 69.4
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 4.3e-86 322.0 212 75.9
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 4.3e-86 322.0 193 80.3
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 1.3e-85 320.5 212 74.5
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 1.6e-85 320.1 212 74.5
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 1.6e-85 320.1 188 80.9
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 4.8e-85 318.5 220 71.4
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 6.2e-85 318.2 212 73.1
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 1.1e-84 317.4 184 79.3
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 1.4e-84 317.0 213 74.6
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 2.4e-84 316.2 203 74.9
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 3.1e-84 315.8 252 64.7
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 6.9e-84 314.7 215 72.1
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 6.9e-84 314.7 182 81.3
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 1.5e-83 313.5 198 74.7
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 2.0e-83 313.2 187 77.5
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 3.4e-83 312.4 187 77.5
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 3.4e-83 312.4 182 80.2
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 5.8e-83 311.6 202 75.2
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 7.6e-83 311.2 184 78.3
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 9.9e-83 310.8 234 65.4
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 1.3e-82 310.5 186 78.0
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 2.2e-82 309.7 236 66.5
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 2.2e-82 309.7 200 73.5
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 2.9e-82 309.3 204 73.5
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 3.8e-82 308.9 187 76.5
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 4.9e-82 308.5 184 78.8
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 4.9e-82 308.5 184 78.8
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 4.9e-82 308.5 268 59.0
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 6.4e-82 308.1 182 78.6
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 1.1e-81 307.4 222 67.6
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 1.1e-81 307.4 184 78.3
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 1.4e-81 307.0 208 71.2
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 1.4e-81 307.0 184 77.7
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 1.4e-81 307.0 212 71.2
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 1.9e-81 306.6 213 69.5
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 1.9e-81 306.6 205 71.2
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 2.4e-81 306.2 211 72.0
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 3.2e-81 305.8 198 73.2
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 4.2e-81 305.4 207 71.5
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 5.4e-81 305.1 204 72.5
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 5.4e-81 305.1 208 70.7
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 7.1e-81 304.7 217 68.2
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 1.2e-80 303.9 202 71.8
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 1.6e-80 303.5 182 77.5
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 2.1e-80 303.1 176 79.0
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 3.5e-80 302.4 208 70.2
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 6.0e-80 301.6 230 63.5
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 1.3e-79 300.4 275 58.2
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 2.3e-79 299.7 198 73.7
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 2.5e-78 296.2 178 77.0
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 4.3e-78 295.4 186 74.7
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 7.4e-78 294.7 244 61.1
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 9.6e-78 294.3 226 64.2
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 3.1e-76 289.3 186 72.6
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 3.1e-76 289.3 184 73.4
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 1.2e-75 287.3 186 71.0
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 1.5e-75 287.0 192 69.3
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 1.5e-75 287.0 192 69.3
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 2.0e-75 286.6 179 74.9
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 2.6e-75 286.2 194 68.6
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 2.6e-75 286.2 194 68.6
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 3.4e-75 285.8 192 68.8
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 4.5e-75 285.4 209 65.1
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 7.6e-75 284.6 186 71.0
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 1.3e-74 283.9 162 82.7
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 3.8e-74 282.3 221 63.8
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 3.8e-74 282.3 166 80.7
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 4.9e-74 282.0 186 70.4
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 6.4e-74 281.6 186 70.4
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 1.1e-73 280.8 183 71.6
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 2.7e-72 276.2 196 69.4
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 1.1e-70 270.8 188 71.3
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 9.6e-70 267.7 231 60.6
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 3.1e-68 262.7 184 68.5
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.2e-67 260.8 282 51.8
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 4.5e-67 258.8 162 72.2
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 7.6e-67 258.1 172 65.1
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 3.5e-64 249.2 174 73.6
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 1.6e-61 240.4 238 57.1
Cpa.g.sc45.24 Carica papaya HOM05D007024 ORTHO05D008865 3.7e-61 239.2 136 82.4
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 2.6e-59 233.0 195 61.0
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 1.3e-58 230.7 138 75.4
CiPaw.09G182200 Carya illinoinensis HOM05D007024 ORTHO05D008865 2.1e-56 223.4 128 80.5
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 7.9e-56 221.5 127 79.5
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 5.7e-54 215.3 131 74.0
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 1.7e-50 203.8 182 52.7
PGSC0003DMG400031729 Solanum tuberosum HOM05D007024 ORTHO05D008865 3.0e-47 193.0 110 82.7
COL.COLO4_27104 Corchorus olitorius HOM05D007024 ORTHO05D008865 2.0e-46 190.3 111 80.2
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 1.3e-45 187.6 142 64.8
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 2.2e-45 186.8 139 64.7
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 1.2e-43 181.0 128 69.5
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 2.6e-43 179.9 168 49.4
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.3e-42 177.6 97 83.5
Glyma.03G176900 Glycine max HOM05D007024 ORTHO05D008865 1.4e-36 157.5 102 70.6
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 1.9e-33 147.1 117 62.4
SMO353G0028 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 3.1e-28 129.8 98 59.2
SMO171G0126 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 7.0e-28 128.6 132 48.5
Hma1.2p1_0111F.1_g053680 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 1.2e-27 127.9 82 74.4
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 3.0e-23 113.2 268 31.7
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 2.0e-22 110.5 234 34.2
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 3.4e-22 109.8 210 33.8
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.3e-21 107.8 186 35.5
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 2.2e-21 107.1 269 30.9
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 2.2e-21 107.1 74 68.9
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 2.8e-21 106.7 186 33.3
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 2.8e-21 106.7 243 31.7
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 3.7e-21 106.3 189 33.9
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 3.7e-21 106.3 196 33.7
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 4.8e-21 105.9 216 32.9
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 6.3e-21 105.5 186 32.3
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 8.3e-21 105.1 198 32.8
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.1e-20 104.8 220 32.3
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.8e-20 104.0 201 32.8
Hma1.2p1_0111F.1_g053690 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 2.4e-20 103.6 53 83.0
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 3.1e-20 103.2 210 33.3
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 5.4e-20 102.4 192 34.4
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 5.4e-20 102.4 192 34.4
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 5.4e-20 102.4 214 33.6
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 5.4e-20 102.4 200 33.0
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 5.4e-20 102.4 252 30.6
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 9.1e-20 101.7 230 32.6
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 1.6e-19 100.9 192 33.9
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 2.0e-19 100.5 221 31.2
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 2.7e-19 100.1 253 32.4
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 2.7e-19 100.1 213 31.5
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 2.7e-19 100.1 214 33.6
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 4.5e-19 99.4 192 33.3
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 5.9e-19 99.0 211 31.3
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 7.7e-19 98.6 227 31.3
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 1.3e-18 97.8 184 31.5
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 1.7e-18 97.4 224 30.8
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 3.8e-18 96.3 210 32.9
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 6.6e-18 95.5 219 30.1
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.5e-17 94.4 215 31.6
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 3.3e-17 93.2 227 30.0
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.2e-16 91.3 186 29.6
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 2.8e-16 90.1 176 34.1
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 3.6e-16 89.7 184 34.8
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 2.0e-14 84.0 95 51.6
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 2.4e-12 77.0 228 29.4
EL10Ac7g17323 Beta vulgaris HOM05D007024 ORTHO05D008865 9.2e-12 75.1 40 80.0
Zm00001eb110150 Zea mays HOM05D007024 ORTHO05D008865 7.8e-11 72.0 63 58.7
CDE07G1737 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.3e-10 71.2 69 53.6
CiPaw.09G182700 Carya illinoinensis HOM05D007024 ORTHO05D008865 3.3e-09 66.6 46 63.0
Mapoly0024s0128 Marchantia polymorpha HOM05D006847 ORTHO05D008685 9.5e-09 65.1 162 29.0
C06p27120 Brassica napus HOM05D007024 ORTHO05D008865 2.8e-08 63.5 50 56.0
BolC6t37885H Brassica oleracea HOM05D007024 ORTHO05D008865 2.8e-08 63.5 50 56.0
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 1.8e-07 60.8 81 38.3
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 2.3e-07 60.5 78 39.7
BcaC08g45103 Brassica carinata HOM05D007024 ORTHO05D008865 5.2e-07 59.3 41 63.4
RcHm_v2.0_Chr4g0422601 Rosa chinensis HOM05D007024 ORTHO05D008865 5.2e-07 59.3 29 86.2
HPP92_026164 Vanilla planifolia HOM05D006847 ORTHO05D008685 6.8e-07 58.9 161 27.3
HPP92_020469 Vanilla planifolia HOM05D006847 ORTHO05D008685 2.6e-06 57.0 160 24.4


User provided reference genes

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