Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 5.7e-203 710.7 354 100.0
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 3.4e-171 605.1 347 88.5
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 1.9e-118 429.9 359 63.5
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.5e-112 409.1 342 61.4
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 1.3e-111 407.1 330 62.7
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 4.8e-109 398.7 331 63.1
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 1.4e-108 397.1 321 63.6
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 3.1e-108 396.0 328 62.2
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.2e-107 394.0 345 60.0
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 1.5e-107 393.7 330 60.6
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 2.0e-107 393.3 327 62.7
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 2.6e-107 392.9 375 58.4
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 3.2e-105 386.0 325 61.8
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 4.2e-105 385.6 345 56.8
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 9.3e-105 384.4 329 60.5
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 3.5e-104 382.5 363 57.6
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 1.0e-103 380.9 345 56.8
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.8e-103 380.2 330 58.2
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 1.8e-103 380.2 325 58.8
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 8.7e-103 377.9 332 57.5
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 1.1e-102 377.5 324 58.6
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 1.5e-102 377.1 328 59.1
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 3.3e-102 375.9 328 59.5
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 9.7e-102 374.4 320 60.9
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 1.6e-101 373.6 345 60.9
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 2.2e-101 373.2 348 55.5
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 2.8e-101 372.9 331 58.3
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 8.2e-101 371.3 340 57.1
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 1.1e-100 370.9 311 61.1
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 1.1e-100 370.9 326 59.5
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 3.1e-100 369.4 344 56.4
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 1.5e-99 367.1 376 52.9
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 2.0e-99 366.7 325 60.6
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 2.6e-99 366.3 330 57.3
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 3.4e-99 365.9 347 55.3
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 4.5e-99 365.5 323 60.7
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 1.7e-98 363.6 326 60.4
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 1.7e-98 363.6 344 57.8
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 1.7e-98 363.6 324 59.0
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 1.7e-98 363.6 357 56.0
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 2.9e-98 362.8 330 58.8
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 2.9e-98 362.8 323 55.7
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 6.5e-98 361.7 337 56.1
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 8.5e-98 361.3 331 58.0
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 8.5e-98 361.3 331 58.9
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 1.4e-97 360.5 318 58.5
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 1.9e-97 360.1 323 59.8
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 3.2e-97 359.4 341 54.8
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 5.5e-97 358.6 330 58.2
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 1.2e-96 357.5 330 56.4
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 1.2e-96 357.5 330 56.4
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 1.6e-96 357.1 330 57.0
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 2.1e-96 356.7 318 60.1
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 4.6e-96 355.5 353 57.8
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 6.1e-96 355.1 328 58.5
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 6.1e-96 355.1 356 54.2
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 7.9e-96 354.8 357 54.6
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 1.0e-95 354.4 346 56.4
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 1.4e-95 354.0 325 56.0
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 1.8e-95 353.6 317 60.3
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 3.9e-95 352.4 334 57.8
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 3.3e-94 349.4 321 57.3
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 7.4e-94 348.2 332 55.1
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 2.2e-93 346.7 325 55.7
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 2.8e-93 346.3 336 55.7
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 4.1e-92 342.4 269 64.7
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 3.4e-91 339.3 325 57.2
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 1.4e-87 327.4 310 54.5
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 6.7e-87 325.1 346 54.9
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 2.0e-86 323.6 342 52.3
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 5.7e-86 322.0 329 52.3
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 3.7e-85 319.3 349 51.6
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 4.1e-84 315.8 315 52.7
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 1.2e-83 314.3 350 50.0
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 1.5e-83 313.9 321 53.9
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 2.6e-83 313.2 324 50.9
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 3.4e-83 312.8 329 51.1
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 5.9e-83 312.0 333 51.7
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 5.9e-83 312.0 336 53.6
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 5.9e-83 312.0 322 52.8
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 1.1e-81 307.8 326 50.9
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 1.1e-81 307.8 350 49.4
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 2.5e-81 306.6 318 52.2
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 3.2e-81 306.2 319 51.1
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 4.2e-81 305.8 283 58.3
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 5.5e-81 305.4 324 50.3
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 2.1e-80 303.5 343 47.8
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 8.0e-80 301.6 340 49.4
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 8.8e-79 298.1 271 59.0
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 1.1e-78 297.7 359 47.9
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 2.6e-78 296.6 355 48.2
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 3.1e-76 289.7 332 49.4
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 3.5e-75 286.2 244 56.6
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 4.0e-71 272.7 260 55.4
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 5.2e-71 272.3 287 55.4
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 1.7e-69 267.3 245 57.1
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 5.3e-68 262.3 335 43.6
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 7.7e-67 258.5 213 61.5
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 1.5e-65 254.2 386 42.0
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 1.0e-63 248.1 324 42.9
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 2.4e-60 236.9 220 57.7
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 7.2e-57 225.3 180 61.7
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 7.2e-57 225.3 354 37.0
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 3.6e-56 223.0 287 49.5
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.4e-52 210.3 331 37.5
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 3.2e-44 183.3 326 39.3
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 4.6e-43 179.5 230 43.9
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 6.6e-34 149.1 152 54.6
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 6.2e-32 142.5 221 40.7
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 1.3e-26 124.8 134 47.8
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 8.9e-23 112.1 79 68.4
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 9.9e-22 108.6 153 41.2
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 1.7e-21 107.8 95 56.8
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.4e-20 104.8 119 51.3
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 7.3e-09 65.9 166 27.1
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 9.6e-09 65.5 69 47.8
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 1.3e-08 65.1 174 31.6
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 8.1e-08 62.4 161 29.8
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 1.4e-07 61.6 123 30.9
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 1.8e-07 61.2 162 30.2
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 6.9e-07 59.3 173 24.9
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 9.0e-07 58.9 162 24.7
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 9.0e-07 58.9 163 30.1
Duzib150G0193 Durio zibethinus HOM05D002956 ORTHO05D008031 1.2e-06 58.5 154 29.2
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 1.2e-06 58.5 111 32.4
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 1.2e-06 58.5 178 27.5
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 2.0e-06 57.8 186 29.6
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 2.0e-06 57.8 121 28.9
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 2.0e-06 57.8 162 32.1
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 2.6e-06 57.4 155 25.8
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 2.6e-06 57.4 93 36.6
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 2.6e-06 57.4 126 27.8
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 3.4e-06 57.0 193 24.4
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 4.5e-06 56.6 187 28.3
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 4.5e-06 56.6 161 24.8
Oeu042263.1 Olea europaea HOM05D005677 ORTHO05D006966 4.5e-06 56.6 181 26.0
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 5.8e-06 56.2 225 26.2
AT5G27400 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 5.8e-06 56.2 234 28.2
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 5.8e-06 56.2 168 26.2
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 5.8e-06 56.2 146 28.1
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 7.6e-06 55.8 84 33.3
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 7.6e-06 55.8 161 28.0
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 9.9e-06 55.5 183 29.0
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 9.9e-06 55.5 265 26.4
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 9.9e-06 55.5 78 37.2
Potri.005G039000 Populus trichocarpa HOM05D002553 ORTHO05D002767 9.9e-06 55.5 224 28.1
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 9.9e-06 55.5 98 30.6


User provided reference genes

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