Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 2.2e-71 272.7 194 100.0
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 6.5e-68 261.2 154 94.8
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 6.8e-57 224.6 151 90.1
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 6.8e-57 224.6 152 82.2
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 2.6e-56 222.6 154 85.7
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 2.6e-56 222.6 157 76.4
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 9.8e-56 220.7 156 85.9
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 6.3e-55 218.0 155 86.5
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 6.3e-55 218.0 155 86.5
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.1e-54 217.2 143 90.2
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 1.1e-54 217.2 155 85.8
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 1.8e-54 216.5 155 78.1
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 2.4e-54 216.1 203 79.3
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 2.4e-54 216.1 203 79.3
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.1e-54 215.7 155 85.8
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 3.1e-54 215.7 155 85.2
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 5.4e-54 214.9 195 79.5
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.6e-53 213.4 153 83.7
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 2.0e-53 213.0 199 74.4
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 3.5e-53 212.2 193 86.0
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 5.9e-53 211.5 157 83.4
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.9e-52 209.1 154 74.0
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 2.9e-52 209.1 153 85.0
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.9e-52 209.1 151 84.8
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 3.8e-52 208.8 149 83.2
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 3.8e-52 208.8 151 86.1
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 5.0e-52 208.4 159 79.9
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 5.0e-52 208.4 149 76.5
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 5.0e-52 208.4 146 86.3
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 6.6e-52 208.0 151 80.1
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 8.6e-52 207.6 151 84.8
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.1e-51 207.2 155 80.6
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 1.5e-51 206.8 152 84.2
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 1.5e-51 206.8 160 80.6
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.5e-51 206.1 142 85.9
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.5e-51 206.1 153 78.4
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 3.3e-51 205.7 151 84.1
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 3.3e-51 205.7 154 83.1
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.3e-51 205.7 150 84.7
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 5.6e-51 204.9 155 71.6
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 9.5e-51 204.1 155 81.9
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.6e-50 203.4 170 69.4
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.6e-50 203.4 170 69.4
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.6e-50 203.4 170 69.4
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 1.6e-50 203.4 152 81.6
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 2.1e-50 203.0 164 79.3
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.1e-50 203.0 154 79.9
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 2.8e-50 202.6 140 86.4
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 2.8e-50 202.6 145 86.2
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 3.6e-50 202.2 155 80.6
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 3.6e-50 202.2 153 78.4
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 3.6e-50 202.2 153 78.4
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 3.6e-50 202.2 155 80.6
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 3.6e-50 202.2 164 80.5
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 4.7e-50 201.8 163 74.8
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 6.1e-50 201.4 154 80.5
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 6.1e-50 201.4 154 80.5
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 6.1e-50 201.4 165 77.0
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 6.1e-50 201.4 153 77.1
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 6.1e-50 201.4 166 66.3
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.0e-49 200.7 155 74.8
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 1.0e-49 200.7 165 72.1
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.0e-49 200.7 161 71.4
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.0e-49 200.7 167 77.2
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 1.0e-49 200.7 161 74.5
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 1.0e-49 200.7 150 82.7
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.8e-49 199.9 155 74.2
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 1.8e-49 199.9 159 76.7
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.3e-49 199.5 152 75.7
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.3e-49 199.5 203 71.4
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 2.3e-49 199.5 153 75.8
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 3.0e-49 199.1 150 80.0
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 4.0e-49 198.7 150 84.0
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 4.0e-49 198.7 153 81.0
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 5.2e-49 198.4 165 76.4
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 5.2e-49 198.4 165 76.4
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 5.2e-49 198.4 154 79.2
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 5.2e-49 198.4 165 76.4
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 5.2e-49 198.4 154 79.9
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 5.2e-49 198.4 194 76.8
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 6.8e-49 198.0 153 77.1
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 6.8e-49 198.0 153 78.4
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 6.8e-49 198.0 161 78.9
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 8.9e-49 197.6 157 79.6
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 8.9e-49 197.6 159 76.1
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 8.9e-49 197.6 151 77.5
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 1.2e-48 197.2 154 80.5
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 1.5e-48 196.8 155 74.2
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 2.0e-48 196.4 172 68.0
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 2.6e-48 196.1 149 79.2
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 2.6e-48 196.1 153 73.9
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 3.4e-48 195.7 150 83.3
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 3.4e-48 195.7 152 80.3
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 4.4e-48 195.3 160 73.8
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 5.7e-48 194.9 149 81.2
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 5.7e-48 194.9 151 78.1
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.7e-48 194.9 142 83.8
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.7e-48 194.9 142 83.8
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 5.7e-48 194.9 142 83.8
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 5.7e-48 194.9 153 74.5
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 7.5e-48 194.5 153 76.5
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 7.5e-48 194.5 160 72.5
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 7.5e-48 194.5 153 79.7
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 9.8e-48 194.1 152 75.7
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 9.8e-48 194.1 142 83.1
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 9.8e-48 194.1 142 83.1
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 9.8e-48 194.1 154 79.9
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 1.3e-47 193.7 145 81.4
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.3e-47 193.7 149 78.5
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 1.7e-47 193.4 144 75.0
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.2e-47 193.0 142 82.4
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 2.2e-47 193.0 161 78.3
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 2.2e-47 193.0 151 80.1
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.9e-47 192.6 142 82.4
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 2.9e-47 192.6 157 80.3
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 2.9e-47 192.6 107 85.0
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 6.4e-47 191.4 155 75.5
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 1.1e-46 190.7 162 72.2
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.1e-46 190.7 150 79.3
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 3.2e-46 189.1 153 77.1
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 9.2e-46 187.6 156 79.5
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 1.2e-45 187.2 159 77.4
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 2.0e-45 186.4 148 79.7
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 2.0e-45 186.4 148 79.7
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 2.0e-45 186.4 111 78.4
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.0e-45 186.4 159 73.0
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 2.0e-45 186.4 142 81.0
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 3.5e-45 185.7 153 77.1
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 4.6e-45 185.3 155 76.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 6.6e-44 181.4 173 69.4
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 6.6e-44 181.4 141 83.7
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 6.6e-44 181.4 141 83.7
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 6.6e-44 181.4 232 66.8
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 1.5e-43 180.3 142 85.9
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 2.5e-43 179.5 153 69.3
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 3.3e-43 179.1 152 75.0
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.3e-43 179.1 156 73.1
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 7.3e-43 177.9 144 76.4
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 7.3e-43 177.9 152 73.7
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.0e-41 174.1 157 70.7
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 1.4e-41 173.7 148 75.0
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.8e-41 173.3 152 75.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 4.0e-41 172.2 90 88.9
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 8.9e-41 171.0 112 72.3
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.5e-40 170.2 94 85.1
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.2e-39 166.4 153 73.2
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 4.1e-38 162.2 104 76.9
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 5.4e-38 161.8 89 84.3
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 5.0e-36 155.2 81 87.7
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 5.6e-35 151.8 126 69.0
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 8.9e-33 144.4 153 65.4
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 2.6e-32 142.9 127 61.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 3.2e-30 136.0 80 77.5
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 7.8e-29 131.3 103 67.0
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 6.8e-25 118.2 76 65.8
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 5.8e-24 115.2 97 66.0
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 8.4e-23 111.3 93 60.2
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.7e-21 106.3 56 89.3
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 7.8e-21 104.8 148 52.7
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 5.1e-20 102.1 114 44.7
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 8.1e-18 94.7 107 54.2
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.4e-17 94.0 107 54.2
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 4.0e-17 92.4 50 80.0
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 9.6e-11 71.2 40 82.5
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.9 74 55.4
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 3.6e-10 69.3 74 55.4
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 3.6e-10 69.3 74 55.4
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 4.8e-10 68.9 149 49.0
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 3.1e-09 66.2 74 54.1
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 3.1e-09 66.2 74 54.1
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 3.1e-09 66.2 74 54.1
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 1.3e-07 60.8 45 64.4


User provided reference genes

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