Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 2.9e-194 681.8 359 100.0
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 9.9e-171 603.6 362 89.2
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 2.9e-170 602.1 363 89.0
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 3.8e-114 415.6 366 60.7
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 1.6e-107 393.7 368 58.7
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 3.5e-107 392.5 367 58.0
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 3.3e-105 386.0 361 57.3
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.4e-103 380.6 368 56.5
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 1.4e-103 380.6 372 57.3
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 6.8e-103 378.3 364 56.3
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 1.5e-102 377.1 364 55.8
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 3.4e-102 375.9 344 57.3
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 5.7e-102 375.2 367 55.0
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 1.7e-101 373.6 369 56.4
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 2.2e-101 373.2 364 55.5
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 3.7e-101 372.5 365 56.2
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 4.9e-101 372.1 368 56.0
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 1.1e-100 370.9 361 56.0
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.4e-100 370.5 364 57.4
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 5.4e-100 368.6 361 55.4
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 9.2e-100 367.9 339 56.6
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.2e-99 367.5 348 55.2
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.2e-99 367.5 348 55.2
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 1.6e-99 367.1 369 53.7
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 1.6e-99 367.1 348 54.9
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.7e-99 366.3 348 55.5
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 5.9e-99 365.2 369 53.1
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 7.8e-99 364.8 365 57.0
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.7e-98 363.6 348 55.2
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 2.9e-98 362.8 346 55.8
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 3.9e-98 362.5 371 55.5
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.5e-97 360.5 429 50.1
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 3.3e-97 359.4 367 54.2
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 4.3e-97 359.0 366 53.8
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 5.6e-97 358.6 367 54.2
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 1.6e-96 357.1 362 55.5
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 2.8e-96 356.3 371 54.2
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 2.8e-96 356.3 358 52.0
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 3.6e-96 355.9 366 53.3
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 3.6e-96 355.9 362 54.4
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 3.6e-96 355.9 365 53.4
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 3.6e-96 355.9 366 51.4
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 8.0e-96 354.8 367 53.4
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 8.0e-96 354.8 362 55.5
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 1.0e-95 354.4 373 53.9
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.8e-95 353.6 363 52.9
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 3.1e-95 352.8 362 55.0
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 4.0e-95 352.4 367 53.1
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.0e-94 350.1 349 52.7
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 7.5e-94 348.2 366 52.7
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 9.8e-94 347.8 367 53.4
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 1.7e-93 347.1 361 52.1
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 8.3e-93 344.7 408 48.8
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.4e-92 344.0 360 54.2
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 1.4e-92 344.0 365 51.2
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.4e-92 343.2 367 53.1
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 3.2e-92 342.8 371 52.0
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 3.2e-92 342.8 344 52.6
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 4.1e-92 342.4 363 53.2
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 9.2e-92 341.3 371 52.0
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 1.2e-91 340.9 371 52.8
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 2.0e-91 340.1 364 53.8
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 2.7e-91 339.7 370 50.3
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.0e-90 337.8 319 58.3
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 1.0e-90 337.8 363 53.2
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 1.7e-90 337.0 413 49.6
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 1.7e-90 337.0 349 51.3
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 3.3e-89 332.8 350 51.1
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 4.3e-89 332.4 361 50.1
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 9.5e-89 331.3 349 52.7
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 2.8e-88 329.7 347 53.6
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 4.7e-88 328.9 344 53.2
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 2.3e-87 326.6 340 54.7
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 5.2e-87 325.5 355 50.7
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.4e-86 322.8 355 50.4
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 7.5e-86 321.6 364 49.2
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 9.8e-86 321.2 364 52.2
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 1.7e-85 320.5 369 49.3
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 3.7e-85 319.3 365 51.0
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 4.9e-85 318.9 364 51.1
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 4.9e-85 318.9 358 50.3
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.4e-84 317.4 367 51.2
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.9e-84 317.0 364 49.7
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.4e-84 316.6 361 48.8
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 6.0e-83 312.0 367 49.6
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 1.0e-82 311.2 343 49.9
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 1.3e-82 310.8 306 56.2
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 5.6e-81 305.4 364 47.3
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 9.5e-81 304.7 367 50.1
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 9.5e-81 304.7 354 46.9
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 1.6e-80 303.9 367 50.1
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.6e-80 303.9 364 48.4
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 2.8e-80 303.1 394 45.7
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.8e-80 303.1 349 47.9
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.8e-80 303.1 364 46.2
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 4.0e-79 299.3 302 54.6
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 4.0e-79 299.3 299 55.2
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.2e-78 297.7 364 45.9
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.4e-78 296.2 362 45.9
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 9.9e-78 294.7 362 45.3
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 3.9e-74 282.7 368 43.8
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 3.3e-73 279.6 352 47.4
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 1.2e-72 277.7 348 46.6
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 2.8e-72 276.6 358 43.0
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 3.6e-72 276.2 313 50.8
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 6.8e-71 271.9 353 43.1
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 6.8e-71 271.9 364 46.4
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 3.4e-70 269.6 357 41.7
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 4.4e-70 269.2 305 51.1
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 4.9e-69 265.8 306 51.6
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 1.1e-68 264.6 361 41.6
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 7.8e-67 258.5 297 50.2
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 3.9e-66 256.1 300 49.3
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.9e-65 253.8 317 45.7
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 5.4e-60 235.7 352 39.8
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 6.0e-59 232.3 354 39.5
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.9e-57 227.3 272 47.8
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 8.1e-56 221.9 247 50.6
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 1.7e-53 214.2 240 50.4
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.9e-53 213.4 360 37.5
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 4.9e-53 212.6 347 39.2
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.6e-51 207.6 238 51.7
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 3.9e-50 203.0 245 50.2
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 5.6e-49 199.1 350 37.7
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 7.4e-49 198.7 373 37.3
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 1.6e-48 197.6 237 50.2
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 3.7e-48 196.4 311 37.6
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.2e-43 181.4 273 42.9
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.3e-42 177.9 240 48.8
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 4.8e-40 169.5 354 30.5
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 4.6e-35 152.9 430 27.7
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 8.5e-29 132.1 127 53.5
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 4.6e-27 126.3 193 39.9
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 2.3e-26 124.0 129 46.5
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 6.3e-24 115.9 154 49.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 8.5e-21 105.5 175 33.7
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 4.2e-12 76.6 78 51.3
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 1.8e-10 71.2 259 25.5
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 3.0e-10 70.5 56 57.1
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 3.9e-10 70.1 56 57.1
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 1.3e-08 65.1 150 35.3
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.1e-07 62.0 178 28.7


User provided reference genes

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