Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 7.7e-212 740.3 407 100.0
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 4.3e-61 239.6 321 38.0
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 5.2e-59 232.6 318 39.0
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 6.8e-59 232.3 321 37.7
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 8.9e-59 231.9 322 38.5
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 8.9e-59 231.9 321 37.4
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.5e-58 231.1 321 37.4
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.0e-58 230.7 322 37.6
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.4e-58 229.9 321 37.4
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 3.4e-58 229.9 325 41.5
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.4e-58 229.9 327 37.6
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.5e-58 228.8 321 37.1
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 9.8e-58 228.4 321 38.0
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 9.8e-58 228.4 321 36.8
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.3e-57 228.0 322 36.3
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 1.7e-57 227.6 318 38.4
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.7e-57 227.6 318 37.7
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.2e-57 227.3 318 37.4
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.9e-57 226.9 321 37.1
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 3.7e-57 226.5 321 37.4
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 3.7e-57 226.5 323 37.2
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 3.7e-57 226.5 321 37.1
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.9e-57 226.1 322 36.6
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 4.9e-57 226.1 321 36.4
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 6.4e-57 225.7 322 36.6
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.4e-57 225.7 320 38.1
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 8.3e-57 225.3 322 37.0
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 8.3e-57 225.3 318 37.7
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 8.3e-57 225.3 321 36.8
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 8.3e-57 225.3 322 35.7
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.1e-56 224.9 321 36.8
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.1e-56 224.9 324 37.3
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.1e-56 224.9 317 36.9
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.4e-56 224.6 321 36.1
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 1.4e-56 224.6 318 37.7
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.4e-56 224.6 321 36.4
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.9e-56 224.2 321 37.4
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.9e-56 224.2 337 36.5
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.9e-56 224.2 321 36.8
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.4e-56 223.8 321 36.4
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.4e-56 223.8 318 37.4
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 3.2e-56 223.4 321 36.4
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 3.2e-56 223.4 321 37.4
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 4.1e-56 223.0 318 36.5
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 5.4e-56 222.6 317 36.6
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.4e-56 222.6 317 38.2
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 7.1e-56 222.2 322 35.4
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 7.1e-56 222.2 318 37.1
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.2e-55 221.5 321 35.8
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.2e-55 221.5 321 36.4
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.2e-55 221.5 321 36.4
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.1e-55 220.7 321 36.4
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 2.1e-55 220.7 318 37.4
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 2.7e-55 220.3 322 36.0
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 2.7e-55 220.3 321 35.5
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 3.5e-55 219.9 322 37.0
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 3.5e-55 219.9 321 36.1
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 3.5e-55 219.9 321 36.1
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 3.5e-55 219.9 321 36.1
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 3.5e-55 219.9 321 36.1
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 3.5e-55 219.9 321 36.8
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 3.5e-55 219.9 321 36.1
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 4.6e-55 219.5 321 36.1
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 4.6e-55 219.5 318 36.5
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 4.6e-55 219.5 318 36.5
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 4.6e-55 219.5 322 35.4
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 6.0e-55 219.2 321 36.1
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 6.0e-55 219.2 321 36.1
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 6.0e-55 219.2 318 36.8
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.0e-54 218.4 318 35.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 1.3e-54 218.0 321 36.1
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.3e-54 218.0 322 35.4
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.7e-54 217.6 321 35.8
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.7e-54 217.6 302 37.7
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.7e-54 217.6 318 35.8
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 2.3e-54 217.2 317 36.9
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 3.0e-54 216.9 318 36.8
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 3.9e-54 216.5 321 35.8
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 3.9e-54 216.5 319 35.7
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 6.6e-54 215.7 321 37.1
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.1e-53 214.9 321 35.8
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-53 214.9 290 38.3
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.1e-53 214.9 321 36.1
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.5e-53 214.5 321 35.8
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.9e-53 214.2 318 36.5
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.9e-53 214.2 290 38.3
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 3.3e-53 213.4 333 34.5
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 4.3e-53 213.0 333 34.5
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 4.3e-53 213.0 333 34.5
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 4.3e-53 213.0 318 35.8
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 5.6e-53 212.6 325 35.7
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 9.5e-53 211.8 352 34.1
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.6e-52 211.1 321 35.2
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 4.7e-52 209.5 318 34.9
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.1e-51 208.4 345 34.5
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.8e-51 207.6 251 40.2
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 3.1e-51 206.8 322 36.3
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 4.0e-51 206.5 319 34.8
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 1.5e-50 204.5 332 35.5
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.0e-50 204.1 339 35.1
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 2.6e-50 203.8 240 39.6
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.6e-47 194.5 410 32.4
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.7e-46 191.0 321 33.6
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 5.1e-46 189.5 321 33.0
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 5.6e-45 186.0 323 32.8
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 3.1e-43 180.3 285 35.4
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 8.9e-43 178.7 285 35.1
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.2e-42 178.3 289 34.3
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 4.2e-40 169.9 371 28.8
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 2.7e-39 167.2 266 34.2
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.0e-38 165.2 321 32.1
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 6.6e-38 162.5 191 38.7
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.9e-37 161.0 323 30.3
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.4e-35 154.8 320 31.6
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-35 153.7 192 40.1
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 4.0e-35 153.3 325 30.8
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.3e-33 148.3 230 33.5
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.4e-32 144.8 300 30.0
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.1e-31 141.0 291 30.2
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.6e-28 130.2 169 36.1
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.4e-27 128.3 210 35.7
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.3e-22 111.7 123 39.0
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.3e-22 110.9 193 34.7
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.1e-20 102.4 188 31.9
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 2.4e-19 100.9 253 29.2
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-18 98.2 126 38.1
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-16 92.0 230 29.1
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.5e-10 71.6 168 31.5
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 2.0e-10 71.2 72 40.3
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 3.4e-10 70.5 117 34.2
PRCOL_00005647 Prasinoderma coloniale HOM05D002716 ORTHO05D003324 1.0e-06 58.9 192 26.0
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 5.1e-06 56.6 80 37.5


User provided reference genes

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