Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 2.9e-238 828.2 420 100.0
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 5.9e-231 803.9 420 96.7
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 1.0e-230 803.1 420 96.4
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 4.6e-220 767.7 415 92.5
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 2.0e-210 735.7 424 87.7
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 9.4e-205 716.8 408 87.5
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 1.7e-193 679.5 416 79.1
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 2.8e-193 678.7 416 79.1
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 5.5e-189 664.5 416 76.9
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 4.7e-188 661.4 484 72.9
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.2e-186 656.8 408 76.7
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 7.3e-181 637.5 416 73.8
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 8.0e-180 634.0 420 74.5
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 8.9e-179 630.6 418 74.9
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 8.9e-179 630.6 416 74.3
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 7.5e-178 627.5 425 71.5
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 3.7e-177 625.2 416 74.0
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 1.4e-176 623.2 413 73.6
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 7.0e-176 620.9 415 74.2
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 9.2e-176 620.5 416 72.6
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 1.2e-175 620.2 416 72.6
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 1.2e-175 620.2 416 72.1
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 7.8e-175 617.5 416 72.4
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 2.3e-174 615.9 462 67.1
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 1.1e-173 613.6 408 73.8
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 4.3e-173 611.7 409 72.6
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 5.6e-173 611.3 416 70.9
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 5.6e-173 611.3 441 70.3
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 9.5e-173 610.5 423 71.2
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 1.2e-172 610.1 413 72.9
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 2.1e-172 609.4 413 71.7
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 6.2e-172 607.8 412 72.8
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.8e-171 606.3 413 72.4
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 5.2e-171 604.7 412 71.8
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 4.9e-169 598.2 421 70.1
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 8.3e-169 597.4 455 66.4
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 2.4e-168 595.9 416 70.7
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 4.1e-168 595.1 416 70.0
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 3.5e-167 592.0 412 70.1
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 4.6e-167 591.7 461 65.7
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.0e-166 590.5 459 65.8
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 1.3e-166 590.1 413 70.2
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 1.7e-166 589.7 413 70.0
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 8.6e-166 587.4 411 69.3
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 7.3e-165 584.3 413 68.5
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 3.6e-164 582.0 416 68.5
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 4.7e-164 581.6 416 67.8
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 6.2e-164 581.3 404 71.0
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 1.8e-163 579.7 414 69.1
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 3.1e-163 578.9 416 67.5
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 3.1e-163 578.9 408 69.4
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 8.9e-163 577.4 409 68.9
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 1.5e-162 576.6 416 69.2
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 2.0e-162 576.2 416 67.5
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 3.4e-162 575.5 412 68.4
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 5.8e-162 574.7 419 69.0
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 7.5e-162 574.3 409 67.7
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 7.5e-162 574.3 405 69.6
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 7.5e-162 574.3 410 67.8
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 1.7e-161 573.2 416 67.1
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 1.7e-161 573.2 422 66.6
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 2.2e-161 572.8 410 68.5
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 2.2e-161 572.8 416 67.5
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 3.2e-160 568.9 413 67.1
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 4.1e-160 568.5 416 67.5
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 2.1e-159 566.2 445 64.3
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 2.1e-159 566.2 402 69.7
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 4.6e-159 565.1 445 63.6
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 7.8e-159 564.3 445 63.4
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 2.5e-157 559.3 416 67.8
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 1.6e-156 556.6 417 66.2
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 4.7e-156 555.1 414 67.6
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 4.7e-156 555.1 416 68.3
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 5.8e-154 548.1 422 64.5
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 7.6e-154 547.7 416 67.8
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.9e-153 545.8 446 63.7
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 2.4e-152 542.7 416 64.2
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 3.5e-151 538.9 420 65.2
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 6.6e-150 534.6 408 65.7
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 8.6e-150 534.3 440 63.6
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 3.1e-147 525.8 408 64.7
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 9.0e-147 524.2 381 68.5
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 9.0e-147 524.2 446 59.9
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 2.9e-145 519.2 455 57.8
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 8.4e-145 517.7 423 61.0
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 1.9e-144 516.5 412 64.6
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 1.9e-144 516.5 342 74.9
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 7.8e-143 511.1 413 63.9
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 2.3e-142 509.6 443 59.6
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 8.7e-142 507.7 420 61.0
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 1.1e-141 507.3 410 59.3
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 1.9e-141 506.5 334 74.3
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 5.6e-141 505.0 410 60.0
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 4.6e-135 485.3 360 65.8
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 1.3e-129 467.2 301 77.1
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 1.4e-128 463.8 330 69.4
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 5.3e-123 445.3 408 57.6
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.5e-119 432.6 283 74.6
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 1.3e-118 430.6 417 55.2
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 3.1e-115 419.5 315 68.6
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 1.0e-102 377.9 264 71.6
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 2.3e-102 376.7 282 65.2
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.0e-101 373.6 215 83.7
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 2.6e-101 373.2 418 46.7
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 7.4e-101 371.7 410 49.3
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 6.9e-99 365.2 263 70.0
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 1.0e-97 361.3 393 48.9
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 1.2e-95 354.4 215 80.5
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 1.1e-91 341.3 238 71.0
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 8.8e-86 321.6 319 54.5
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 9.1e-83 311.6 361 49.6
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 7.7e-82 308.5 242 62.4
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 7.5e-77 292.0 314 49.4
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 5.4e-75 285.8 293 51.5
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 9.1e-75 285.0 369 43.9
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 1.6e-63 247.7 225 57.3
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 1.9e-59 234.2 400 37.0
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 1.9e-59 234.2 142 78.2
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.5e-56 223.8 137 73.7
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 4.3e-56 223.0 166 65.7
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 6.8e-54 215.7 153 69.9
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 2.2e-52 210.7 179 57.0
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.4e-51 208.0 125 80.0
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 1.4e-43 181.4 405 32.6
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 8.9e-38 162.2 157 55.4
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 2.9e-36 157.1 306 33.0
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 1.5e-32 144.8 108 69.4
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.6e-31 141.4 99 63.6
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 9.9e-29 132.1 87 75.9
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 1.9e-24 117.9 90 63.3
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 7.3e-24 115.9 359 28.1
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.1e-19 102.1 95 50.5
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 4.2e-19 100.1 218 30.3
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.7e-18 97.4 117 53.8
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.5e-18 97.1 79 59.5
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 5.1e-17 93.2 65 64.6
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 3.7e-15 87.0 54 79.6
TPR.G3376 Trifolium pratense HOM05D004447 ORTHO05D005973 1.8e-06 58.2 267 22.1
Psat7g024280 Pisum sativum HOM05D004447 ORTHO05D005973 3.1e-06 57.4 267 23.6


User provided reference genes

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