Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401028118 Solanum tuberosum HOM05D007678 ORTHO05D009658 5.7e-136 487.6 257 100.0
Sopen10g031780 Solanum pennellii HOM05D007678 ORTHO05D009658 5.7e-128 461.1 259 95.0
Solyc10g081280.2 Solanum lycopersicum HOM05D007678 ORTHO05D009658 7.0e-126 454.1 260 93.1
CAN.G128.118 Capsicum annuum HOM05D001269 ORTHO05D001083 9.5e-91 337.4 190 92.6
Peaxi162Scf00153g00057 Petunia axillaris HOM05D007678 ORTHO05D009658 5.2e-89 331.6 195 88.2
Nitab4.5_0000062g0570 Nicotiana tabacum HOM05D007678 ORTHO05D009658 4.1e-86 322.0 193 89.1
Nitab4.5_0008005g0010 Nicotiana tabacum HOM05D007678 ORTHO05D009658 1.0e-84 317.4 183 90.7
Dinv31528 Davidia involucrata HOM05D007678 ORTHO05D009658 7.1e-78 294.7 236 68.2
Duzib106G1843 Durio zibethinus HOM05D007678 ORTHO05D009658 3.5e-77 292.4 235 67.7
Atru.chr2.1713_Atru.chr2.1714 Acer truncatum HOM05D007678 ORTHO05D009658 3.0e-76 289.3 250 65.6
TAR623G0324 Trochodendron aralioides HOM05D007678 ORTHO05D009658 2.5e-75 286.2 262 64.1
Gohir.D10G198600 Gossypium hirsutum HOM05D007678 ORTHO05D009658 5.6e-75 285.0 208 72.1
Gorai.011G222500 Gossypium raimondii HOM05D007678 ORTHO05D009658 5.6e-75 285.0 208 72.1
Actinidia01693 Actinidia chinensis HOM05D007678 ORTHO05D009658 1.6e-74 283.5 253 62.8
Potri.001G033500 Populus trichocarpa HOM05D007678 ORTHO05D009658 2.8e-74 282.7 247 65.2
Prupe.2G048500 Prunus persica HOM05D007678 ORTHO05D009658 8.1e-74 281.2 220 69.5
Nn7g37012 Nelumbo nucifera HOM05D007678 ORTHO05D009658 1.4e-73 280.4 263 60.8
Oeu044217.3 Olea europaea HOM05D007678 ORTHO05D009658 5.2e-73 278.5 283 56.2
FvH4_7g04260 Fragaria vesca HOM05D007678 ORTHO05D009658 9.9e-72 274.2 213 68.1
QL04p021923 Quercus lobata HOM05D007678 ORTHO05D009658 9.9e-72 274.2 210 70.0
MD02G1272300 Malus domestica HOM05D007678 ORTHO05D009658 1.7e-71 273.5 214 67.8
Thecc.10G137600 Theobroma cacao HOM05D007678 ORTHO05D009658 1.7e-71 273.5 223 65.9
FAN10G0661 Fragaria x ananassa HOM05D007678 ORTHO05D009658 2.9e-71 272.7 259 61.4
RcHm_v2.0_Chr1g0328821 Rosa chinensis HOM05D007678 ORTHO05D009658 2.9e-71 272.7 213 67.1
Medtr7g009670 Medicago truncatula HOM05D007678 ORTHO05D009658 4.1e-70 268.9 259 61.4
Ah.12g064780 Amaranthus hybridus HOM05D007678 ORTHO05D009658 5.4e-70 268.5 237 61.6
MELO3C034052.2 Cucumis melo HOM05D007678 ORTHO05D009658 1.2e-69 267.3 211 66.4
Lj1g0010481 Lotus japonicus HOM05D007678 ORTHO05D009658 6.0e-69 265.0 208 66.3
TWI38G1059 Tripterygium wilfordii HOM05D007678 ORTHO05D009658 6.0e-69 265.0 211 65.9
SalBow6G2419 Salvia bowleyana HOM05D007678 ORTHO05D009658 7.8e-69 264.6 215 62.8
Haze_02966 Corylus avellana HOM05D007678 ORTHO05D009658 1.0e-68 264.2 265 58.5
COL.COLO4_04659 Corchorus olitorius HOM05D007678 ORTHO05D009658 1.7e-68 263.5 243 61.3
Lalb_Chr17g0337231 Lupinus albus HOM05D007678 ORTHO05D009658 2.3e-68 263.1 237 60.3
Ca_04109_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 3.0e-68 262.7 241 60.2
Ca_04118_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 3.0e-68 262.7 241 60.2
Sed0019894 Sechium edule HOM05D000001 ORTHO05D000003 3.9e-68 262.3 211 66.4
ECA248G0545 Erigeron canadensis HOM05D007678 ORTHO05D009658 6.6e-68 261.5 220 63.2
ATR0307G037 Amborella trichopoda HOM05D007678 ORTHO05D009658 1.1e-67 260.8 239 60.7
DCAR_001914 Daucus carota HOM05D007678 ORTHO05D009658 1.9e-67 260.0 238 63.9
Gohir.A10G190900 Gossypium hirsutum HOM05D007678 ORTHO05D009658 2.5e-67 259.6 191 70.7
Glyma.09G240200 Glycine max HOM05D007678 ORTHO05D009658 5.6e-67 258.5 221 64.3
Psat3g196520 Pisum sativum HOM05D007678 ORTHO05D009658 1.2e-66 257.3 238 60.1
Lsat_1_v5_gn_7_114920 Lactuca sativa HOM05D007678 ORTHO05D009658 2.1e-66 256.5 230 60.9
MBI13_g30074_MAGBIO Magnolia biondii HOM05D007678 ORTHO05D009658 2.1e-66 256.5 211 67.3
Sabra01G0023800 Salix brachista HOM05D007678 ORTHO05D009658 2.8e-66 256.1 264 56.4
HanXRQChr12g0376111 Helianthus annuus HOM05D007678 ORTHO05D009658 8.1e-66 254.6 211 67.3
Migut.J01589 Erythranthe guttata HOM05D007678 ORTHO05D009658 2.0e-64 250.0 215 61.4
QL04p022035 Quercus lobata HOM05D007678 ORTHO05D009658 3.8e-63 245.7 192 68.8
Sc10g0003150 Simmondsia chinensis HOM05D007678 ORTHO05D009658 2.4e-62 243.0 246 56.9
unitig_37.g12769 Utricularia gibba HOM05D007678 ORTHO05D009658 9.3e-62 241.1 208 60.1
PGR031G1114 Punica granatum HOM05D007678 ORTHO05D009658 2.1e-61 240.0 213 62.9
Manes.04G155050 Manihot esculenta HOM05D007678 ORTHO05D009658 2.7e-61 239.6 251 56.2
HPP92_018248 Vanilla planifolia HOM05D007678 ORTHO05D009658 3.9e-60 235.7 207 59.4
arahy.Tifrunner.gnm1.ann1.EB95VJ Arachis hypogaea HOM05D007678 ORTHO05D009658 1.1e-59 234.2 240 56.2
Eucgr.G03196 Eucalyptus grandis HOM05D007678 ORTHO05D009658 9.6e-59 231.1 218 60.1
vmacro20847 Vaccinium macrocarpon HOM05D007678 ORTHO05D009658 9.6e-59 231.1 246 57.7
CDE09G0612 Ceratophyllum demersum HOM05D007678 ORTHO05D009658 1.3e-58 230.7 199 63.8
Zm00001eb303400 Zea mays HOM05D007678 ORTHO05D009658 4.8e-58 228.8 207 59.9
EL10Ac2g02701 Beta vulgaris HOM05D007678 ORTHO05D009658 6.2e-58 228.4 241 55.6
FAN06G1516 Fragaria x ananassa HOM05D007678 ORTHO05D009658 1.4e-57 227.3 242 56.6
Hund13420 Selenicereus undatus HOM05D007678 ORTHO05D009658 4.5e-56 222.2 262 53.1
CiPaw.14G011000 Carya illinoinensis HOM05D007678 ORTHO05D009658 4.9e-55 218.8 189 64.6
CsaV3_5G029470 Cucumis sativus L. HOM05D007678 ORTHO05D000003 6.0e-53 211.8 211 58.3
AUR62031676 Chenopodium quinoa HOM05D007678 ORTHO05D009658 6.2e-50 201.8 167 63.5
Rhsim01G0121700 Rhododendron simsii HOM05D007678 ORTHO05D009658 2.4e-49 199.9 151 70.2
Glyma.18G256300 Glycine max HOM05D007678 ORTHO05D009658 3.1e-49 199.5 216 56.0
VMungo1383G0210 Vigna mungo HOM05D000430 ORTHO05D009658 6.9e-49 198.4 156 66.7
CBR_g30334 Chara braunii HOM05D007678 ORTHO05D009658 3.8e-47 192.6 207 48.3
Mapoly0003s0067 Marchantia polymorpha HOM05D007678 ORTHO05D009658 2.7e-45 186.4 200 46.0
SMO174G0167 Selaginella moellendorffii HOM05D007678 ORTHO05D009658 9.6e-43 177.9 183 50.8
Pp3c18_7980 Physcomitrium patens HOM05D007678 ORTHO05D009658 6.2e-42 175.3 210 42.4
Cc06_g20600 Coffea canephora HOM05D007678 ORTHO05D009658 4.9e-39 165.6 160 60.0
arahy.Tifrunner.gnm1.ann1.L3S1G4 Arachis hypogaea HOM05D007678 ORTHO05D009658 3.2e-38 162.9 212 48.1
CANSAT56G0191 Cannabis sativa HOM05D007678 ORTHO05D009658 3.9e-36 156.0 129 65.1
Lsat_1_v5_gn_5_155661 Lactuca sativa HOM05D007678 ORTHO05D009658 1.1e-33 147.9 205 46.8
Phvul.008G043200 Phaseolus vulgaris HOM05D007678 ORTHO05D009658 2.9e-31 139.8 151 53.0
TPR.G8973 Trifolium pratense HOM05D007678 ORTHO05D009658 6.5e-31 138.7 98 72.4
QL04p021970 Quercus lobata HOM05D007678 ORTHO05D009658 1.9e-30 137.1 108 65.7
TPR.G4277 Trifolium pratense HOM05D007678 ORTHO05D009658 1.9e-30 137.1 140 53.6
Cpa.g.sc33.162 Carica papaya HOM05D007678 ORTHO05D009658 7.2e-30 135.2 96 76.0
Cc06_g20610 Coffea canephora HOM05D007678 ORTHO05D009658 1.8e-25 120.6 87 65.5
arahy.Tifrunner.gnm1.ann1.1DGF2A Arachis hypogaea HOM05D007678 ORTHO05D009658 6.9e-25 118.6 96 60.4
arahy.Tifrunner.gnm1.ann1.6E2HM0 Arachis hypogaea HOM05D007678 ORTHO05D009658 2.6e-16 90.1 78 57.7
PRCOL_00006709 Prasinoderma coloniale HOM05D007678 ORTHO05D009658 4.5e-16 89.4 209 26.8
MCO01G505 Micromonas commoda HOM05D007678 ORTHO05D009658 2.2e-15 87.0 206 26.2
GSVIVG01012452001 Vitis vinifera HOM05D007678 ORTHO05D009658 8.5e-15 85.1 79 55.7
QL04p021975 Quercus lobata HOM05D007678 ORTHO05D009658 5.5e-14 82.4 59 72.9
CSS0047660 Camellia sinensis var. sinensis HOM05D007678 ORTHO05D009658 6.1e-13 79.0 60 65.0
arahy.Tifrunner.gnm1.ann1.78M82M Arachis hypogaea HOM05D007678 ORTHO05D009658 3.9e-12 76.3 66 62.1
Os07g0222900 Oryza sativa ssp. japonica HOM05D007678 ORTHO05D009658 7.4e-11 72.0 66 56.1
arahy.Tifrunner.gnm1.ann1.NH3ZAS Arachis hypogaea HOM05D007678 ORTHO05D009658 2.5e-06 57.0 68 50.0
QL02p047964 Quercus lobata HOM05D007678 ORTHO05D009658 4.2e-06 56.2 98 42.9


User provided reference genes

Program Settings