Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 9.9e-83 310.1 156 100.0
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 8.9e-76 287.0 146 97.9
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 8.4e-74 280.4 153 91.5
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.6e-72 276.2 151 92.1
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.7e-66 256.1 148 85.8
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 8.4e-66 253.8 147 83.7
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 1.9e-65 252.7 150 83.3
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 4.2e-65 251.5 155 82.6
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.2e-64 250.0 149 84.6
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.6e-64 249.6 144 84.7
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.1e-64 249.2 151 81.5
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 3.5e-64 248.4 145 84.1
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 4.6e-64 248.1 151 83.4
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 6.0e-64 247.7 145 81.4
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 6.0e-64 247.7 151 81.5
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.0e-63 246.9 155 80.6
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.0e-63 246.9 148 81.8
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.3e-63 246.5 145 80.7
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 2.3e-63 245.7 155 74.8
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 2.3e-63 245.7 152 80.3
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 3.0e-63 245.4 149 81.2
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 3.0e-63 245.4 151 80.8
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 3.9e-63 245.0 155 75.5
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 5.1e-63 244.6 148 79.1
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 8.7e-63 243.8 156 78.2
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 8.7e-63 243.8 149 82.6
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 8.7e-63 243.8 149 82.6
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.1e-62 243.4 148 81.1
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.1e-62 243.4 148 81.1
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.9e-62 242.7 147 81.0
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.5e-62 242.3 151 80.8
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 2.5e-62 242.3 151 80.8
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 2.5e-62 242.3 147 81.0
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 2.5e-62 242.3 148 81.1
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 4.3e-62 241.5 147 80.3
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 4.3e-62 241.5 147 83.0
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 4.3e-62 241.5 147 83.0
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 5.6e-62 241.1 148 81.8
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 5.6e-62 241.1 150 81.3
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 7.3e-62 240.7 147 78.9
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 7.3e-62 240.7 151 79.5
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 9.6e-62 240.4 152 77.0
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.3e-61 240.0 146 79.5
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.3e-61 240.0 149 79.2
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.3e-61 240.0 149 79.2
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.6e-61 239.6 147 81.0
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 2.1e-61 239.2 151 78.1
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.8e-61 238.8 153 77.8
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 3.6e-61 238.4 167 73.7
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.8e-61 238.0 149 78.5
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 4.8e-61 238.0 153 80.4
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 6.2e-61 237.7 145 75.2
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 6.2e-61 237.7 147 76.2
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 8.1e-61 237.3 149 77.2
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 2.4e-60 235.7 148 79.7
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.4e-60 235.7 149 76.5
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 2.4e-60 235.7 149 79.2
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 2.4e-60 235.7 146 77.4
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.1e-60 235.3 151 75.5
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 4.0e-60 235.0 144 83.3
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.0e-60 235.0 120 97.5
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 6.9e-60 234.2 148 79.1
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 6.9e-60 234.2 148 76.4
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 6.9e-60 234.2 142 82.4
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.2e-59 233.4 147 77.6
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.2e-59 233.4 144 77.8
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 1.2e-59 233.4 144 77.8
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.5e-59 233.0 151 77.5
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 1.5e-59 233.0 147 76.9
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 1.5e-59 233.0 150 78.0
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.5e-59 233.0 147 74.8
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 1.5e-59 233.0 145 80.0
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 3.4e-59 231.9 147 76.9
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.4e-59 231.9 148 77.7
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 5.8e-59 231.1 149 77.2
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 5.8e-59 231.1 147 75.5
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 5.8e-59 231.1 147 78.2
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 7.6e-59 230.7 149 79.2
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 7.6e-59 230.7 149 75.2
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 7.6e-59 230.7 165 73.3
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 9.9e-59 230.3 153 74.5
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 9.9e-59 230.3 156 72.4
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.2e-58 229.2 154 75.3
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 3.8e-58 228.4 151 76.8
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 3.8e-58 228.4 151 76.8
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 4.9e-58 228.0 147 74.8
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 6.4e-58 227.6 145 77.2
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 8.4e-58 227.3 147 73.5
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 8.4e-58 227.3 150 74.7
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.1e-57 226.9 145 75.2
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.4e-57 226.5 146 74.0
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.4e-57 226.5 146 74.0
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 2.4e-57 225.7 142 76.1
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 2.4e-57 225.7 145 74.5
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 3.2e-57 225.3 145 74.5
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 3.2e-57 225.3 145 74.5
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 4.2e-57 224.9 147 72.8
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 7.1e-57 224.2 148 73.0
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 9.3e-57 223.8 148 72.3
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 1.2e-56 223.4 149 75.8
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 2.7e-56 222.2 145 73.8
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 3.5e-56 221.9 147 72.1
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 3.5e-56 221.9 141 79.4
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 4.6e-56 221.5 145 73.1
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 4.6e-56 221.5 148 72.3
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.0e-55 220.3 138 81.2
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.0e-55 220.3 138 81.2
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.0e-55 220.3 138 81.2
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.3e-55 219.9 148 73.6
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 3.0e-55 218.8 161 68.3
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 8.7e-55 217.2 142 73.9
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 8.7e-55 217.2 138 79.7
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.1e-54 216.9 156 70.5
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 2.5e-54 215.7 149 69.8
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.3e-53 213.4 145 72.4
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.6e-53 213.0 148 64.9
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 2.8e-53 212.2 121 83.5
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 3.7e-53 211.8 148 72.3
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 8.1e-53 210.7 145 74.5
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.4e-52 209.9 143 72.7
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.4e-52 209.1 148 66.9
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 2.4e-52 209.1 154 72.7
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 2.4e-52 209.1 154 72.7
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.6e-51 205.7 148 70.3
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 3.4e-51 205.3 148 67.6
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.2e-50 202.6 105 90.5
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.9e-50 202.2 146 65.8
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 3.8e-50 201.8 160 65.6
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 6.4e-50 201.1 154 70.1
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 2.4e-49 199.1 155 71.6
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 3.2e-49 198.7 125 79.2
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 4.2e-49 198.4 137 72.3
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.1e-48 196.1 123 78.9
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 6.0e-48 194.5 122 77.9
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 7.4e-46 187.6 134 70.9
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 7.4e-46 187.6 148 60.1
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 7.4e-46 187.6 143 69.2
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 9.6e-46 187.2 148 60.8
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-45 186.4 112 82.1
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 9.0e-44 180.6 143 62.2
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.0e-43 179.5 101 83.2
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 7.6e-43 177.6 154 57.1
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 1.9e-41 172.9 106 81.1
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-40 170.2 96 85.4
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.3e-39 166.0 101 74.3
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 2.3e-39 166.0 172 56.4
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 5.7e-38 161.4 83 90.4
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 4.8e-37 158.3 101 73.3
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.9e-33 146.4 92 80.4
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.9e-33 146.4 82 84.1
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 4.2e-33 145.2 73 97.3
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.8e-31 139.8 90 80.0
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 8.8e-31 137.5 130 56.9
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 4.5e-27 125.2 150 52.0
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 7.4e-22 107.8 63 82.5
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 2.8e-21 105.9 138 38.4
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 3.1e-20 102.4 96 51.0
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.5e-19 100.1 164 34.8
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 3.3e-14 82.4 77 58.4
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 4.1e-12 75.5 59 64.4
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.0e-11 73.2 49 71.4
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 7.7e-11 71.2 174 29.9
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 1.0e-10 70.9 80 53.8
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.1e-09 67.4 91 46.2


User provided reference genes

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