Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401014502 Solanum tuberosum HOM05D002602 ORTHO05D002661 5.4e-39 164.1 97 100.0
Sopen08g021810 Solanum pennellii HOM05D002602 ORTHO05D002661 2.1e-35 152.1 93 97.8
Solyc08g150138.1 Solanum lycopersicum HOM05D002602 ORTHO05D002661 8.1e-35 150.2 92 97.8
Sopen08g021800 Solanum pennellii HOM05D002602 ORTHO05D002661 1.3e-32 142.9 96 91.7
Solyc08g067880.4 Solanum lycopersicum HOM05D002602 ORTHO05D002661 4.9e-32 141.0 96 91.7
Nitab4.5_0000125g0110 Nicotiana tabacum HOM05D002602 ORTHO05D002661 8.4e-24 113.6 89 83.1
Nitab4.5_0012266g0010 Nicotiana tabacum HOM05D002602 ORTHO05D002661 3.5e-22 108.2 89 80.9
CAN.G21.18 Capsicum annuum HOM05D002602 ORTHO05D002661 1.3e-19 99.8 99 74.7
CAN.G21.20 Capsicum annuum HOM05D002602 ORTHO05D002661 1.3e-19 99.8 99 74.7
CAN.G29708.1 Capsicum annuum HOM05D002602 ORTHO05D002661 1.3e-19 99.8 99 74.7
RcHm_v2.0_Chr6g0312721 Rosa chinensis HOM05D002602 ORTHO05D002661 3.1e-18 95.1 86 59.3
FvH4_2g30190 Fragaria vesca HOM05D002602 ORTHO05D002661 6.9e-18 94.0 97 55.7
FAN20G3150 Fragaria x ananassa HOM05D002602 ORTHO05D002661 6.9e-18 94.0 86 58.1
Rhsim02G0187000 Rhododendron simsii HOM05D002602 ORTHO05D002661 4.5e-17 91.3 96 55.2
Sed0025801 Sechium edule HOM05D002602 ORTHO05D002661 4.5e-17 91.3 88 61.4
FAN27G2877 Fragaria x ananassa HOM05D002602 ORTHO05D002661 1.3e-16 89.7 97 54.6
DCAR_023980 Daucus carota HOM05D002602 ORTHO05D002661 1.7e-16 89.4 104 54.8
MSTRG.1648 Avicennia marina HOM05D002602 ORTHO05D002661 2.2e-16 89.0 105 61.0
Duzib150G1692 Durio zibethinus HOM05D002602 ORTHO05D002661 2.2e-16 89.0 96 59.4
MSTRG.14002 Avicennia marina HOM05D002602 ORTHO05D002661 4.9e-16 87.8 97 54.6
SGA_v2.0_scaffold169G38633 Striga asiatica HOM05D002602 ORTHO05D002661 1.1e-15 86.7 102 52.0
Oeu031564.1 Olea europaea HOM05D002602 ORTHO05D002661 1.4e-15 86.3 102 52.9
A01p05770 Brassica napus HOM05D002602 ORTHO05D002661 2.5e-15 85.5 83 54.2
C01p06340 Brassica napus HOM05D002602 ORTHO05D002661 2.5e-15 85.5 92 55.4
BraA01t00546Z Brassica rapa HOM05D002602 ORTHO05D002661 2.5e-15 85.5 83 54.2
Dinv35879 Davidia involucrata HOM05D002602 ORTHO05D002661 3.2e-15 85.1 94 55.3
Oeu045175.1 Olea europaea HOM05D002602 ORTHO05D002661 3.2e-15 85.1 105 44.8
BolC1t00630H Brassica oleracea HOM05D002602 ORTHO05D002661 4.2e-15 84.7 92 53.3
Actinidia13423 Actinidia chinensis HOM05D002250 ORTHO05D002393 5.5e-15 84.3 105 61.0
Migut.A00271 Erythranthe guttata HOM05D002602 ORTHO05D002661 5.5e-15 84.3 100 49.0
Lalb_Chr23g0269011 Lupinus albus HOM05D002602 ORTHO05D002661 7.1e-15 84.0 74 63.5
AT4G32610 Arabidopsis thaliana HOM05D002602 ORTHO05D002661 1.2e-14 83.2 98 53.1
ClCG05G017230 Citrullus lanatus HOM05D002602 ORTHO05D002661 1.2e-14 83.2 98 63.3
Haze_21626 Corylus avellana HOM05D002602 ORTHO05D002661 2.1e-14 82.4 96 53.1
Manes.16G068500 Manihot esculenta HOM05D002602 ORTHO05D002661 2.7e-14 82.0 104 59.6
Oeu014657.1 Olea europaea HOM05D002602 ORTHO05D002661 2.7e-14 82.0 106 51.9
AL7G19150 Arabidopsis lyrata HOM05D002602 ORTHO05D002661 3.5e-14 81.6 87 54.0
CSS0023863 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 4.6e-14 81.3 89 68.5
Glyma.04G072600 Glycine max HOM05D002602 ORTHO05D002661 6.0e-14 80.9 92 64.1
BcaC09g52052 Brassica carinata HOM05D002602 ORTHO05D002661 1.0e-13 80.1 81 55.6
CsaV3_3G046710 Cucumis sativus L. HOM05D002602 ORTHO05D002661 1.0e-13 80.1 98 62.2
Manes.16G068400 Manihot esculenta HOM05D002602 ORTHO05D002661 1.0e-13 80.1 104 59.6
Oeu037592.1 Olea europaea HOM05D002602 ORTHO05D002661 1.0e-13 80.1 106 51.9
Actinidia13291 Actinidia chinensis HOM05D002602 ORTHO05D002661 1.8e-13 79.3 95 54.7
CANSAT56G2101 Cannabis sativa HOM05D002602 ORTHO05D002661 1.8e-13 79.3 94 53.2
RcHm_v2.0_Chr2g0091121 Rosa chinensis HOM05D002602 ORTHO05D002661 1.8e-13 79.3 95 61.1
vmacro05448 Vaccinium macrocarpon HOM05D002602 ORTHO05D002661 1.8e-13 79.3 83 56.6
CSS0015478 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 2.3e-13 79.0 89 67.4
Carub.0007s0793 Capsella rubella HOM05D002602 ORTHO05D002661 2.3e-13 79.0 86 54.7
Gohir.D05G011600 Gossypium hirsutum HOM05D002602 ORTHO05D002661 2.3e-13 79.0 97 56.7
MD15G1114900 Malus domestica HOM05D002602 ORTHO05D002661 2.3e-13 79.0 90 53.3
EL10Ac2g02533 Beta vulgaris HOM05D002602 ORTHO05D002661 3.0e-13 78.6 92 53.3
Phvul.009G098300 Phaseolus vulgaris HOM05D002602 ORTHO05D002661 3.0e-13 78.6 93 59.1
TWI34G1255 Tripterygium wilfordii HOM05D002602 ORTHO05D002661 3.0e-13 78.6 101 55.4
Dinv30216 Davidia involucrata HOM05D002602 ORTHO05D002661 3.9e-13 78.2 95 52.6
Glyma.06G073800 Glycine max HOM05D002602 ORTHO05D002661 3.9e-13 78.2 92 64.1
Gohir.A08G237200 Gossypium hirsutum HOM05D002602 ORTHO05D002661 3.9e-13 78.2 95 62.1
TAR624G0315 Trochodendron aralioides HOM05D002602 ORTHO05D002661 3.9e-13 78.2 85 54.1
Hund03001 Selenicereus undatus HOM05D002602 ORTHO05D002661 5.1e-13 77.8 92 52.2
ATR0037G044 Amborella trichopoda HOM05D002602 ORTHO05D002661 8.7e-13 77.0 96 50.0
Gorai.009G011900 Gossypium raimondii HOM05D002602 ORTHO05D002661 8.7e-13 77.0 97 59.8
GSVIVG01035728001 Vitis vinifera HOM05D002602 ORTHO05D002661 8.7e-13 77.0 98 54.1
Peaxi162Scf00105g01219 Petunia axillaris HOM05D002602 ORTHO05D002661 1.1e-12 76.6 92 67.4
Phvul.003G176400 Phaseolus vulgaris HOM05D002602 ORTHO05D002661 1.1e-12 76.6 75 57.3
Psat5g026840 Pisum sativum HOM05D002602 ORTHO05D002661 1.1e-12 76.6 96 51.0
FvH4_1g05450 Fragaria vesca HOM05D002602 ORTHO05D002661 1.5e-12 76.3 90 58.9
FAN23G0655 Fragaria x ananassa HOM05D002602 ORTHO05D002661 1.5e-12 76.3 90 58.9
unitig_0.g2813 Utricularia gibba HOM05D002602 ORTHO05D002661 1.9e-12 75.9 99 49.5
Lj1g0024566 Lotus japonicus HOM05D002602 ORTHO05D002661 3.3e-12 75.1 99 58.6
MBI01_g10036_MAGBIO Magnolia biondii HOM05D002602 ORTHO05D002661 3.3e-12 75.1 93 52.7
Actinidia14641 Actinidia chinensis HOM05D002250 ORTHO05D002393 4.3e-12 74.7 98 59.2
FAN26G0699 Fragaria x ananassa HOM05D002602 ORTHO05D002661 4.3e-12 74.7 90 55.6
FAN26G2978 Fragaria x ananassa HOM05D002602 ORTHO05D002661 4.3e-12 74.7 90 55.6
Sed0014074 Sechium edule HOM05D002602 ORTHO05D002661 4.3e-12 74.7 92 55.4
Duzib168G0558 Durio zibethinus HOM05D002602 ORTHO05D002661 5.7e-12 74.3 92 62.0
unitig_747.g21878 Utricularia gibba HOM05D002602 ORTHO05D002661 5.7e-12 74.3 99 54.5
FAN28G2603 Fragaria x ananassa HOM05D002602 ORTHO05D002661 7.4e-12 73.9 90 60.0
Gohir.A05G010900 Gossypium hirsutum HOM05D002602 ORTHO05D002661 7.4e-12 73.9 97 58.8
Ah.12g063240 Amaranthus hybridus HOM05D002602 ORTHO05D002661 9.7e-12 73.6 98 46.9
Ah.12g063250 Amaranthus hybridus HOM05D002602 ORTHO05D002661 9.7e-12 73.6 93 48.4
PGR031G2332 Punica granatum HOM05D002602 ORTHO05D002661 1.6e-11 72.8 101 50.5
SalBow8G1639 Salvia bowleyana HOM05D002602 ORTHO05D002661 1.6e-11 72.8 104 49.0
Potri.018G034800 Populus trichocarpa HOM05D002602 ORTHO05D002661 2.2e-11 72.4 70 62.9
Thhalv10000247m.g Eutrema salsugineum HOM05D002602 ORTHO05D002661 2.8e-11 72.0 95 58.9
Oeu019415.1 Olea europaea HOM05D002602 ORTHO05D002661 2.8e-11 72.0 106 46.2
Migut.E01502 Erythranthe guttata HOM05D002602 ORTHO05D002661 4.8e-11 71.2 101 51.5
QL12p031218 Quercus lobata HOM05D002602 ORTHO05D002661 4.8e-11 71.2 90 52.2
A09p55510 Brassica napus HOM05D002602 ORTHO05D002661 6.3e-11 70.9 99 59.6
FAN19G2525 Fragaria x ananassa HOM05D002602 ORTHO05D002661 6.3e-11 70.9 93 57.0
Atru.chr7.1291 Acer truncatum HOM05D002602 ORTHO05D002661 8.2e-11 70.5 96 58.3
BraA09t40953Z Brassica rapa HOM05D002602 ORTHO05D002661 8.2e-11 70.5 98 60.2
AT2G25670 Arabidopsis thaliana HOM05D002602 ORTHO05D002661 1.1e-10 70.1 80 66.2
SalBow4G3032 Salvia bowleyana HOM05D002602 ORTHO05D002661 1.1e-10 70.1 99 54.5
Thecc.09G115400 Theobroma cacao HOM05D002602 ORTHO05D002661 1.1e-10 70.1 98 46.9
TAR383G0480 Trochodendron aralioides HOM05D002602 ORTHO05D002661 1.1e-10 70.1 86 46.5
TAR636G3129 Trochodendron aralioides HOM05D002602 ORTHO05D002661 1.1e-10 70.1 99 47.5
Duzib187G0766 Durio zibethinus HOM05D002602 ORTHO05D002661 1.4e-10 69.7 87 59.8
Prupe.7G226700 Prunus persica HOM05D002602 ORTHO05D002661 1.4e-10 69.7 101 45.5
SGA_v2.0_scaffold163G38094 Striga asiatica HOM05D002250 ORTHO05D002393 1.4e-10 69.7 101 57.4
THA.LOC104803776 Tarenaya hassleriana HOM05D002602 ORTHO05D002661 1.4e-10 69.7 101 57.4
Potri.006G246300 Populus trichocarpa HOM05D002602 ORTHO05D002661 1.8e-10 69.3 70 52.9
Duzib150G1573 Durio zibethinus HOM05D002602 ORTHO05D002661 2.4e-10 68.9 97 40.2
Gohir.A07G003400 Gossypium hirsutum HOM05D002602 ORTHO05D002661 2.4e-10 68.9 100 48.0
Hma1.2p1_0175F.1_g077310 Hydrangea macrophylla HOM05D002602 ORTHO05D002661 2.4e-10 68.9 93 49.5
CiPaw.08G015900 Carya illinoinensis HOM05D002602 ORTHO05D002661 3.1e-10 68.6 94 54.3
Dinv41572 Davidia involucrata HOM05D002602 ORTHO05D002661 3.1e-10 68.6 87 62.1
Gohir.D07G003800 Gossypium hirsutum HOM05D002602 ORTHO05D002661 3.1e-10 68.6 100 43.0
Gorai.001G003500 Gossypium raimondii HOM05D002602 ORTHO05D002661 3.1e-10 68.6 100 43.0
Nn8g39271 Nelumbo nucifera HOM05D002602 ORTHO05D002661 3.1e-10 68.6 65 53.8
Nitab4.5_0000066g0030 Nicotiana tabacum HOM05D002602 ORTHO05D002661 3.1e-10 68.6 98 46.9
CDE07G1242 Ceratophyllum demersum HOM05D002602 ORTHO05D002661 4.1e-10 68.2 64 54.7
Ciclev10008908m.g Citrus clementina HOM05D002602 ORTHO05D002661 4.1e-10 68.2 68 64.7
Solyc05g018490.3 Solanum lycopersicum HOM05D002602 ORTHO05D002661 4.1e-10 68.2 98 49.0
TPR.G34682 Trifolium pratense HOM05D002602 ORTHO05D002661 4.1e-10 68.2 96 56.2
CARHR115580 Cardamine hirsuta HOM05D002602 ORTHO05D002661 5.3e-10 67.8 65 50.8
Nn2g11832 Nelumbo nucifera HOM05D002602 ORTHO05D002661 5.3e-10 67.8 95 45.3
TWI63G0040 Tripterygium wilfordii HOM05D002602 ORTHO05D002661 5.3e-10 67.8 98 50.0
MBI04_g20759_MAGBIO Magnolia biondii HOM05D002602 ORTHO05D002661 6.9e-10 67.4 60 60.0
Sopen05g015460 Solanum pennellii HOM05D002602 ORTHO05D002661 6.9e-10 67.4 63 58.7
Atru.chr7.2321 Acer truncatum HOM05D002602 ORTHO05D002661 9.0e-10 67.0 70 51.4
HanXRQChr09g0240461 Helianthus annuus HOM05D002602 ORTHO05D002661 1.2e-09 66.6 65 58.5
Psat5g026800 Pisum sativum HOM05D002602 ORTHO05D002661 1.2e-09 66.6 96 47.9
Gohir.D08G257800 Gossypium hirsutum HOM05D002602 ORTHO05D002661 1.5e-09 66.2 96 56.2
BcaC01g01010 Brassica carinata HOM05D002602 ORTHO05D002661 2.0e-09 65.9 85 55.3
Lalb_Chr12g0197611 Lupinus albus HOM05D002602 ORTHO05D002661 2.0e-09 65.9 75 60.0
Prupe.1G466300 Prunus persica HOM05D002602 ORTHO05D002661 2.0e-09 65.9 93 55.9
TWI32G1161 Tripterygium wilfordii HOM05D002602 ORTHO05D002661 2.0e-09 65.9 98 45.9
CiPaw.07G217400 Carya illinoinensis HOM05D002602 ORTHO05D002661 3.4e-09 65.1 70 60.0
Duzib168G1527 Durio zibethinus HOM05D002602 ORTHO05D002661 3.4e-09 65.1 99 47.5
Nn4g23128 Nelumbo nucifera HOM05D002602 ORTHO05D002661 3.4e-09 65.1 90 50.0
PGSC0003DMG400027440 Solanum tuberosum HOM05D002602 ORTHO05D002661 3.4e-09 65.1 66 53.0
VMungo1309G1769 Vigna mungo HOM05D002602 ORTHO05D002661 3.4e-09 65.1 88 59.1
unitig_32.g10925 Utricularia gibba HOM05D002602 ORTHO05D002661 5.9e-09 64.3 95 48.4
Ca_15695_v3 Cicer arietinum L. HOM05D002602 ORTHO05D002661 7.6e-09 63.9 96 52.1
Gorai.004G274800 Gossypium raimondii HOM05D002602 ORTHO05D002661 7.6e-09 63.9 96 55.2
MD02G1062600 Malus domestica HOM05D002602 ORTHO05D002661 7.6e-09 63.9 101 44.6
Nitab4.5_0000042g0010 Nicotiana tabacum HOM05D002602 ORTHO05D002661 7.6e-09 63.9 67 50.7
Gohir.A13G203900 Gossypium hirsutum HOM05D002602 ORTHO05D002661 1.3e-08 63.2 95 52.6
Medtr3g108090 Medicago truncatula HOM05D002602 ORTHO05D002661 1.3e-08 63.2 92 59.8
Medtr3g108100 Medicago truncatula HOM05D002602 ORTHO05D002661 1.3e-08 63.2 92 59.8
Ca_06867_v3 Cicer arietinum L. HOM05D002602 ORTHO05D002661 1.7e-08 62.8 102 50.0
Zm00001eb347000 Zea mays HOM05D002602 ORTHO05D002661 1.7e-08 62.8 53 54.7
Aqoxy7G01832 Aquilegia oxysepala HOM05D002602 ORTHO05D002661 2.2e-08 62.4 63 61.9
Thhalv10025336m.g Eutrema salsugineum HOM05D002602 ORTHO05D002661 2.2e-08 62.4 63 52.4
AL4G17270 Arabidopsis lyrata HOM05D002602 ORTHO05D002661 2.9e-08 62.0 77 63.6
BraA08t33762Z Brassica rapa HOM05D002602 ORTHO05D002661 2.9e-08 62.0 87 52.9
HanXRQChr10g0317411 Helianthus annuus HOM05D002602 ORTHO05D002661 2.9e-08 62.0 66 59.1
Lsat_1_v5_gn_7_43001 Lactuca sativa HOM05D002602 ORTHO05D002661 2.9e-08 62.0 67 52.2
PSO782G3209 Papaver somniferum HOM05D002602 ORTHO05D002661 3.8e-08 61.6 90 45.6
SMO196G0021 Selaginella moellendorffii HOM05D002602 ORTHO05D002661 3.8e-08 61.6 86 39.5
Actinidia15713 Actinidia chinensis HOM05D002602 ORTHO05D002661 5.0e-08 61.2 98 46.9
CSS0041585 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 5.0e-08 61.2 67 62.7
CSS0048428 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 5.0e-08 61.2 67 62.7
Lsat_1_v5_gn_8_94581 Lactuca sativa HOM05D002602 ORTHO05D002661 5.0e-08 61.2 70 47.1
Zm00001eb300980 Zea mays HOM05D002602 ORTHO05D002661 5.0e-08 61.2 71 45.1
Actinidia09399 Actinidia chinensis HOM05D002602 ORTHO05D002661 6.5e-08 60.8 87 57.5
Peaxi162Scf00552g00311 Petunia axillaris HOM05D002602 ORTHO05D002661 6.5e-08 60.8 68 51.5
Thecc.09G115500 Theobroma cacao HOM05D002602 ORTHO05D002661 1.1e-07 60.1 98 39.8
Aa31sc329G20 Aethionema arabicum HOM05D002602 ORTHO05D002661 1.9e-07 59.3 67 47.8
CSS0009468 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 1.9e-07 59.3 68 61.8
CSS0035831 Camellia sinensis var. sinensis HOM05D002602 ORTHO05D002661 1.9e-07 59.3 68 61.8
Glyma.17G120600 Glycine max HOM05D002602 ORTHO05D002661 1.9e-07 59.3 63 50.8
Gohir.D13G209200 Gossypium hirsutum HOM05D002602 ORTHO05D002661 1.9e-07 59.3 68 57.4
Gorai.013G238300 Gossypium raimondii HOM05D002602 ORTHO05D002661 1.9e-07 59.3 68 57.4
THA.LOC104803817 Tarenaya hassleriana HOM05D002602 ORTHO05D002661 1.9e-07 59.3 66 62.1
TAR626G0862 Trochodendron aralioides HOM05D002602 ORTHO05D002661 1.9e-07 59.3 89 51.7
VMungo1215G0338 Vigna mungo HOM05D002602 ORTHO05D002661 1.9e-07 59.3 63 55.6
BcaNung04518 Brassica carinata HOM05D002602 ORTHO05D002661 2.5e-07 58.9 61 54.1
unitig_748.g8208 Utricularia gibba HOM05D002602 ORTHO05D002661 2.5e-07 58.9 97 45.4
Lsat_1_v5_gn_5_99801 Lactuca sativa HOM05D002602 ORTHO05D002661 4.2e-07 58.2 70 51.4
Actinidia20335 Actinidia chinensis HOM05D002602 ORTHO05D002661 5.5e-07 57.8 67 61.2
Nn8g39269 Nelumbo nucifera HOM05D002250 ORTHO05D002661 5.5e-07 57.8 76 50.0
PGR044G2133 Punica granatum HOM05D002602 ORTHO05D002661 5.5e-07 57.8 70 57.1
Carub.0004s0546 Capsella rubella HOM05D002602 ORTHO05D002661 7.2e-07 57.4 80 60.0
Cpa.g.sc23.148 Carica papaya HOM05D002602 ORTHO05D002661 7.2e-07 57.4 65 46.2
arahy.Tifrunner.gnm1.ann1.2N625L Arachis hypogaea HOM05D002602 ORTHO05D002661 1.2e-06 56.6 87 54.0
Sc06g0000680 Simmondsia chinensis HOM05D002602 ORTHO05D002661 1.2e-06 56.6 64 53.1
Cpa.g.sc23.149 Carica papaya HOM05D002602 ORTHO05D002661 1.6e-06 56.2 65 44.6
PSO063G7370 Papaver somniferum HOM05D002602 ORTHO05D002661 2.1e-06 55.8 90 43.3
Os05g0179800 Oryza sativa ssp. japonica HOM05D002602 ORTHO05D002661 2.7e-06 55.5 53 67.9
SMO234G0064 Selaginella moellendorffii HOM05D002602 ORTHO05D002661 7.9e-06 53.9 72 37.5


User provided reference genes

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