Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 5.3e-105 384.4 202 100.0
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.0e-99 365.9 202 95.0
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 4.2e-94 348.2 192 95.8
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 2.3e-92 342.4 192 93.8
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.8e-87 325.1 187 90.4
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 7.0e-81 304.3 192 82.3
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.7e-79 299.7 191 81.2
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 3.8e-79 298.5 186 81.7
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.0e-79 298.1 192 80.7
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.6e-79 297.7 192 84.4
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.1e-78 297.0 192 80.2
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.3e-78 295.4 186 80.6
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 9.5e-78 293.9 186 80.1
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.1e-70 270.4 186 73.1
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.5e-70 270.0 186 72.0
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 1.9e-70 269.6 182 75.3
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.2e-69 266.9 186 72.6
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.6e-69 266.5 185 73.0
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 4.7e-69 265.0 188 72.9
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 1.4e-68 263.5 186 71.0
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 4.0e-68 261.9 182 72.5
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 5.2e-68 261.5 184 72.3
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 6.8e-68 261.2 182 72.0
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 6.8e-68 261.2 186 72.0
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 6.8e-68 261.2 183 72.7
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.2e-67 260.4 186 71.5
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 1.5e-67 260.0 184 73.9
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.0e-67 259.6 183 71.6
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.0e-67 259.6 186 71.0
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 4.4e-67 258.5 185 70.8
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 4.4e-67 258.5 186 68.8
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 7.5e-67 257.7 186 68.8
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 9.8e-67 257.3 186 70.4
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 1.7e-66 256.5 184 69.6
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 1.7e-66 256.5 188 69.7
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.9e-66 255.8 183 68.9
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 4.9e-66 255.0 188 68.1
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 8.3e-66 254.2 186 68.8
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 8.3e-66 254.2 189 69.3
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 8.3e-66 254.2 189 69.3
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 8.3e-66 254.2 186 68.8
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 1.4e-65 253.4 169 75.1
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.4e-65 253.4 183 68.9
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.9e-65 253.1 190 65.8
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 2.4e-65 252.7 190 70.0
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 2.4e-65 252.7 184 69.0
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 5.4e-65 251.5 194 66.0
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 7.0e-65 251.1 186 68.3
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 7.0e-65 251.1 189 68.3
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 9.2e-65 250.8 186 68.3
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 9.2e-65 250.8 186 65.6
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 9.2e-65 250.8 186 65.6
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 1.2e-64 250.4 184 67.9
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 1.2e-64 250.4 187 67.9
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-64 250.0 183 67.8
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 2.0e-64 249.6 184 67.9
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 2.0e-64 249.6 137 93.4
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 2.7e-64 249.2 183 69.4
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 3.5e-64 248.8 188 67.0
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 6.0e-64 248.1 182 71.4
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 6.0e-64 248.1 186 68.3
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.3e-63 246.9 184 66.8
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 1.3e-63 246.9 186 67.2
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 1.7e-63 246.5 183 68.3
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 2.3e-63 246.1 187 66.3
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.0e-63 245.7 186 65.1
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 3.9e-63 245.4 192 65.6
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 3.9e-63 245.4 198 65.2
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 3.9e-63 245.4 188 67.0
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 6.6e-63 244.6 188 66.5
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 6.6e-63 244.6 212 61.8
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 8.6e-63 244.2 192 65.1
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.1e-62 243.8 190 65.8
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 1.1e-62 243.8 182 70.3
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.1e-62 243.8 182 68.1
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.9e-62 243.0 188 66.0
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 2.5e-62 242.7 188 66.0
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 4.3e-62 241.9 182 68.1
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 5.6e-62 241.5 188 66.0
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 7.3e-62 241.1 182 67.0
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 7.3e-62 241.1 188 65.4
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 7.3e-62 241.1 183 66.7
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 9.5e-62 240.7 184 64.7
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 9.5e-62 240.7 186 66.7
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.6e-61 240.0 186 64.5
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.6e-61 238.8 172 68.6
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 4.7e-61 238.4 194 64.9
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 6.2e-61 238.0 188 65.4
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 6.2e-61 238.0 217 57.6
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 8.0e-61 237.7 175 68.0
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 8.0e-61 237.7 207 58.5
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.1e-60 237.3 183 64.5
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-60 236.9 183 63.4
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.4e-60 236.9 177 70.1
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 2.3e-60 236.1 187 62.6
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.3e-60 236.1 177 69.5
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 6.8e-60 234.6 188 63.8
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 6.8e-60 234.6 184 64.1
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 8.9e-60 234.2 183 63.4
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.2e-59 233.8 183 65.0
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 2.6e-59 232.6 183 61.7
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 3.4e-59 232.3 187 62.6
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 4.4e-59 231.9 183 63.9
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 5.8e-59 231.5 183 63.9
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 7.5e-59 231.1 183 65.0
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.3e-58 230.3 183 61.7
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 2.2e-58 229.6 184 65.8
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 6.4e-58 228.0 188 63.3
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.1e-57 227.3 183 62.3
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.4e-57 226.9 184 61.4
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 1.4e-57 226.9 187 59.9
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 3.2e-57 225.7 192 59.9
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 5.4e-57 224.9 192 59.4
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 5.4e-57 224.9 183 60.7
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 9.2e-57 224.2 183 61.7
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 3.5e-56 222.2 183 60.1
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 4.6e-56 221.9 183 60.7
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.9e-55 218.8 199 57.3
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 5.1e-55 218.4 188 60.1
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.1e-54 217.2 169 65.7
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 5.6e-54 214.9 189 58.2
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.6e-53 213.4 272 48.5
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 3.1e-52 209.1 168 65.5
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 4.0e-52 208.8 186 57.0
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 4.9e-50 201.8 181 57.5
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.4e-49 199.5 120 84.2
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 3.2e-49 199.1 183 55.2
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 2.1e-48 196.4 183 56.8
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 4.6e-48 195.3 191 53.4
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 6.0e-48 194.9 146 66.4
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 1.7e-47 193.4 140 68.6
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.9e-46 189.9 183 52.5
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 2.5e-46 189.5 183 56.8
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.6e-45 186.8 132 68.9
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.8e-45 186.0 149 61.1
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.8e-44 183.3 188 52.7
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 6.8e-44 181.4 196 51.0
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.4e-43 179.1 196 49.5
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.7e-42 176.8 125 68.8
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.9e-39 165.6 199 47.7
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 3.3e-38 162.5 113 73.5
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 9.6e-38 161.0 109 68.8
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 2.1e-37 159.8 109 70.6
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.4e-36 157.1 150 52.7
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.4e-36 156.4 143 54.5
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 8.4e-34 147.9 197 44.7
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.9e-33 146.7 135 55.6
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.3e-31 140.6 96 70.8
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 9.6e-30 134.4 189 41.8
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 4.0e-28 129.0 106 62.3
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 1.5e-27 127.1 112 58.9
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 3.5e-24 115.9 188 44.7
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 4.9e-18 95.5 79 62.0
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 1.1e-17 94.4 79 58.2
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 2.7e-16 89.7 68 63.2
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 3.3e-14 82.8 75 56.0
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 7.4e-14 81.6 65 60.0
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 6.2e-13 78.6 65 58.5
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.4e-11 72.8 44 77.3
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 5.8e-11 72.0 68 52.9
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.5e-09 66.6 54 55.6
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 9.3e-09 64.7 58 51.7


User provided reference genes

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