Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 1.0e-45 186.4 98 100.0
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 1.3e-43 179.5 98 95.9
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 2.8e-43 178.3 97 95.9
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 3.4e-41 171.4 98 90.8
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 1.0e-40 169.9 98 88.8
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 5.1e-37 157.5 98 82.7
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.1e-18 95.1 94 60.6
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.1e-18 95.1 94 60.6
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 3.1e-18 95.1 101 58.4
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 5.9e-17 90.9 93 61.3
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 7.7e-17 90.5 103 56.3
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 1.0e-16 90.1 99 57.6
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.0e-16 90.1 98 57.1
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 4.7e-14 81.3 96 49.0
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 8.0e-14 80.5 88 56.8
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 8.0e-14 80.5 94 57.4
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 1.0e-13 80.1 106 50.0
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 1.0e-13 80.1 93 53.8
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 3.0e-13 78.6 90 55.6
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 4.0e-13 78.2 96 51.0
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 6.8e-13 77.4 95 49.5
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 8.8e-13 77.0 94 56.4
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.2e-12 76.6 102 48.0
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.2e-12 76.6 102 48.0
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.2e-12 76.6 98 53.1
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 1.2e-12 76.6 103 49.5
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.2e-12 76.6 103 49.5
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 2.0e-12 75.9 101 48.5
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 2.6e-12 75.5 87 52.9
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 3.4e-12 75.1 92 52.2
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 4.4e-12 74.7 96 47.9
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 5.7e-12 74.3 97 51.5
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 1.3e-11 73.2 104 49.0
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.3e-11 73.2 97 47.4
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 1.3e-11 73.2 86 51.2
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.3e-11 73.2 100 48.0
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.3e-11 73.2 93 52.7
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 1.7e-11 72.8 89 50.6
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 1.7e-11 72.8 92 51.1
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 1.7e-11 72.8 104 50.0
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.2e-11 72.4 91 51.6
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 2.8e-11 72.0 88 51.1
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 3.7e-11 71.6 88 53.4
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 3.7e-11 71.6 97 51.5
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 4.8e-11 71.2 100 49.0
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 6.3e-11 70.9 94 48.9
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 6.3e-11 70.9 89 49.4
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 6.3e-11 70.9 109 45.9
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 8.3e-11 70.5 91 49.5
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 8.3e-11 70.5 92 46.7
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.4e-10 69.7 96 51.0
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 1.4e-10 69.7 93 49.5
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 1.4e-10 69.7 96 46.9
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.8e-10 69.3 91 48.4
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 1.8e-10 69.3 96 46.9
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.4e-10 68.9 82 53.7
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 2.4e-10 68.9 102 46.1
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 2.4e-10 68.9 91 48.4
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 3.1e-10 68.6 100 48.0
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 3.1e-10 68.6 103 44.7
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 4.1e-10 68.2 84 52.4
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 4.1e-10 68.2 97 45.4
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 5.4e-10 67.8 64 56.2
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 5.4e-10 67.8 92 43.5
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 5.4e-10 67.8 101 46.5
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 5.4e-10 67.8 94 47.9
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 5.4e-10 67.8 93 49.5
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 7.0e-10 67.4 94 39.4
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 9.1e-10 67.0 88 51.1
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.2e-09 66.6 88 52.3
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 1.2e-09 66.6 104 45.2
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 1.6e-09 66.2 54 61.1
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 2.0e-09 65.9 93 47.3
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 2.7e-09 65.5 89 48.3
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 3.5e-09 65.1 88 51.1
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.5e-09 65.1 88 52.3
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 3.5e-09 65.1 105 46.7
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 4.5e-09 64.7 86 48.8
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 4.5e-09 64.7 96 44.8
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 7.7e-09 63.9 100 45.0
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 1.0e-08 63.5 61 55.7
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.0e-08 63.5 78 47.4
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.0e-08 63.5 92 47.8
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.3e-08 63.2 96 44.8
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.7e-08 62.8 99 50.5
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.7e-08 62.8 99 50.5
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.7e-08 62.8 99 50.5
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 1.7e-08 62.8 97 44.3
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 1.7e-08 62.8 90 45.6
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 2.2e-08 62.4 52 59.6
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 2.2e-08 62.4 95 46.3
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.9e-08 62.0 61 54.1
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 2.9e-08 62.0 93 45.2
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 2.9e-08 62.0 100 46.0
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 2.9e-08 62.0 86 46.5
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 2.9e-08 62.0 85 44.7
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.8e-08 61.6 84 51.2
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 3.8e-08 61.6 61 54.1
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 3.8e-08 61.6 101 46.5
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 3.8e-08 61.6 87 46.0
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.8e-08 61.6 96 43.8
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 3.8e-08 61.6 93 47.3
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 5.0e-08 61.2 84 46.4
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 5.0e-08 61.2 100 46.0
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 5.0e-08 61.2 105 44.8
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 5.0e-08 61.2 85 44.7
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 5.0e-08 61.2 92 46.7
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 6.5e-08 60.8 97 45.4
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.5e-08 60.8 87 49.4
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 8.5e-08 60.5 95 45.3
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 8.5e-08 60.5 62 53.2
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 8.5e-08 60.5 86 50.0
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 8.5e-08 60.5 90 45.6
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 8.5e-08 60.5 61 54.1
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 8.5e-08 60.5 74 48.6
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 1.1e-07 60.1 64 51.6
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 1.1e-07 60.1 90 43.3
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 1.1e-07 60.1 93 47.3
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 1.5e-07 59.7 52 57.7
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 1.5e-07 59.7 85 43.5
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.5e-07 59.7 97 47.4
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.5e-07 59.7 100 45.0
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 1.9e-07 59.3 52 57.7
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 1.9e-07 59.3 52 57.7
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 1.9e-07 59.3 52 57.7
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 1.9e-07 59.3 94 46.8
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 2.5e-07 58.9 53 56.6
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 2.5e-07 58.9 53 56.6
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.5e-07 58.9 94 42.6
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.5e-07 58.9 96 42.7
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.5e-07 58.9 90 44.4
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 2.5e-07 58.9 42 64.3
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 2.5e-07 58.9 97 47.4
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 2.5e-07 58.9 98 43.9
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 2.5e-07 58.9 103 42.7
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 3.2e-07 58.5 53 56.6
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 3.2e-07 58.5 87 47.1
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 4.2e-07 58.2 95 45.3
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 5.5e-07 57.8 53 56.6
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 5.5e-07 57.8 53 56.6
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 5.5e-07 57.8 53 56.6
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 5.5e-07 57.8 53 56.6
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 5.5e-07 57.8 82 47.6
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 7.2e-07 57.4 101 44.6
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 9.4e-07 57.0 94 42.6
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 1.2e-06 56.6 109 42.2
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.2e-06 56.6 86 43.0
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 1.2e-06 56.6 87 43.7
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 1.6e-06 56.2 97 45.4
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 1.6e-06 56.2 110 36.4
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 2.1e-06 55.8 97 45.4
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 2.1e-06 55.8 86 47.7
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 2.1e-06 55.8 83 48.2
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 2.7e-06 55.5 101 45.5
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 2.7e-06 55.5 93 43.0
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.6e-06 55.1 86 41.9
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 3.6e-06 55.1 96 42.7
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 3.6e-06 55.1 50 60.0
CiPaw.01G009400 Carya illinoinensis HOM05D003477 ORTHO05D004043 4.7e-06 54.7 95 43.2
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 4.7e-06 54.7 93 41.9
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 4.7e-06 54.7 101 45.5
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 6.1e-06 54.3 86 46.5
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 6.1e-06 54.3 86 45.3
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 6.1e-06 54.3 86 45.3
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 6.1e-06 54.3 96 41.7
Glyma.18G192300 Glycine max HOM05D003477 ORTHO05D004043 6.1e-06 54.3 94 41.5
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 6.1e-06 54.3 85 47.1
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 6.1e-06 54.3 46 65.2
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 6.1e-06 54.3 88 42.0
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 6.1e-06 54.3 84 44.0
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 6.1e-06 54.3 41 58.5
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 8.0e-06 53.9 38 63.2
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 8.0e-06 53.9 49 57.1
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 8.0e-06 53.9 50 54.0
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 8.0e-06 53.9 87 43.7
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 8.0e-06 53.9 86 46.5


User provided reference genes

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