Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.3e-257 891.7 450 100.0
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 6.0e-242 840.5 451 94.5
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 3.0e-241 838.2 451 94.0
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 6.7e-209 730.7 454 82.2
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.4e-206 723.0 459 81.7
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 7.0e-198 694.1 450 81.1
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 9.1e-198 693.7 450 80.4
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.6e-146 523.5 456 59.4
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.0e-145 518.8 455 60.7
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 6.4e-143 511.5 454 60.1
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 2.4e-142 509.6 452 60.2
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.2e-141 507.3 451 60.5
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 1.5e-136 490.3 452 58.6
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 2.0e-136 490.0 450 58.9
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 1.3e-135 487.3 457 58.4
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 4.9e-135 485.3 501 55.3
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 4.9e-135 485.3 451 57.6
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 4.2e-134 482.3 457 58.2
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 4.2e-134 482.3 461 58.1
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 2.7e-133 479.6 453 59.2
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 3.5e-133 479.2 470 56.0
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 3.5e-133 479.2 455 58.7
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 4.6e-133 478.8 451 58.3
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.0e-132 477.6 458 57.6
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 1.8e-132 476.9 450 55.3
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 4.3e-131 472.2 453 58.9
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 4.3e-131 472.2 453 58.9
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 4.3e-131 472.2 492 54.5
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 7.4e-131 471.5 452 57.7
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 1.3e-130 470.7 474 56.1
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 8.2e-130 468.0 450 57.1
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 1.1e-129 467.6 490 55.1
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.4e-129 467.2 453 58.5
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.8e-129 466.8 475 55.4
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 1.5e-128 463.8 505 53.9
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 2.0e-128 463.4 451 56.1
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 2.0e-128 463.4 452 54.9
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 2.0e-128 463.4 451 55.2
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 2.6e-128 463.0 468 54.1
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 1.0e-127 461.1 465 54.0
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.3e-127 460.7 451 55.4
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.2e-127 459.9 487 54.6
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 2.9e-127 459.5 443 56.7
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 4.9e-127 458.8 459 56.0
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 8.4e-127 458.0 456 55.3
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 3.5e-125 452.6 450 55.6
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 4.6e-125 452.2 526 50.4
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 6.0e-125 451.8 463 53.3
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.0e-124 451.1 452 55.8
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 2.3e-124 449.9 450 54.0
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 3.0e-124 449.5 451 54.8
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 3.9e-124 449.1 534 49.3
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 8.7e-124 448.0 456 55.5
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 1.5e-123 447.2 451 56.3
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 7.4e-123 444.9 449 55.0
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 4.8e-122 442.2 461 53.1
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 1.8e-121 440.3 461 53.4
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 6.9e-121 438.3 461 53.8
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 2.0e-120 436.8 461 53.6
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 3.4e-120 436.0 448 56.2
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 5.9e-120 435.3 453 54.1
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 1.0e-119 434.5 458 53.3
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 1.3e-119 434.1 456 53.3
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.3e-119 434.1 465 52.5
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 2.2e-119 433.3 465 52.9
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.9e-119 433.0 456 55.3
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 5.0e-119 432.2 459 54.5
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 6.5e-119 431.8 458 52.0
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.1e-118 431.0 455 52.7
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.4e-118 430.6 487 50.9
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 2.5e-118 429.9 452 49.8
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 5.5e-118 428.7 460 52.6
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.6e-117 427.2 524 48.3
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.6e-117 427.2 455 51.6
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 4.6e-117 425.6 456 53.5
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 4.6e-117 425.6 467 52.7
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 2.5e-115 419.9 460 51.3
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 5.7e-115 418.7 460 50.7
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 9.7e-115 417.9 459 52.7
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 1.3e-114 417.5 460 51.7
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 2.8e-114 416.4 459 52.9
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 1.1e-113 414.5 467 47.3
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 4.1e-113 412.5 453 51.9
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.7e-111 407.1 451 51.0
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 1.8e-108 397.1 280 67.9
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 1.1e-107 394.4 267 68.5
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.4e-105 387.5 530 47.2
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.4e-105 387.5 477 45.3
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 1.7e-103 380.6 271 66.8
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.5e-102 376.7 450 48.0
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 4.7e-101 372.5 270 65.9
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 3.3e-99 366.3 284 62.7
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 3.7e-98 362.8 357 53.5
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 3.7e-98 362.8 299 58.5
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.2e-96 357.8 273 59.3
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.6e-96 357.5 273 63.0
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 1.3e-95 354.4 448 45.3
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 2.9e-95 353.2 266 59.4
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 4.2e-94 349.4 329 56.2
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 5.5e-94 349.0 273 59.3
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.2e-93 347.8 525 43.0
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 3.6e-93 346.3 266 58.6
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 2.2e-90 337.0 280 58.9
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 1.6e-88 330.9 241 66.8
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.7e-85 320.1 273 55.7
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 5.2e-84 315.8 266 55.6
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.6e-80 304.3 271 55.7
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.7e-80 303.5 247 59.1
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 2.7e-80 303.5 263 57.4
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 2.3e-79 300.4 297 50.2
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 6.6e-79 298.9 194 71.6
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.3e-71 273.9 282 50.4
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.5e-70 270.4 177 70.1
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.3e-70 269.6 278 49.3
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.8e-67 259.2 283 49.1
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 1.3e-66 258.1 191 61.3
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.7e-55 221.1 226 48.7
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.1e-53 212.2 341 38.7
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 1.5e-51 208.0 286 40.2
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 5.8e-51 206.1 244 54.1
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.7e-48 197.2 341 36.4
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 6.0e-48 196.1 139 64.0
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 1.9e-46 191.0 178 52.8
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 2.4e-41 174.1 137 60.6
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 9.3e-41 172.2 263 43.3
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 2.1e-40 171.0 136 60.3
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.9e-38 164.5 253 39.9
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 2.5e-38 164.1 106 70.8
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.8e-36 157.9 78 96.2
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 5.8e-35 152.9 300 33.0
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 5.8e-35 152.9 292 33.9
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 1.4e-33 148.3 255 43.5
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 2.4e-33 147.5 254 43.7
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 6.0e-32 142.9 295 33.2
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.8e-29 133.3 165 43.0
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 7.1e-25 119.4 336 28.6
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 2.7e-24 117.5 98 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 6.0e-24 116.3 119 48.7
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.0e-23 115.5 292 29.1
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 1.2e-11 75.5 167 31.7
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.6e-11 74.3 105 42.9
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 7.6e-11 72.8 114 48.2
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.0e-10 72.4 53 60.4
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 1.4e-09 68.6 89 46.1
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 4.2e-09 67.0 67 50.7
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.5e-06 58.5 65 44.6
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.5e-06 57.8 37 64.9


User provided reference genes

Program Settings