Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.6e-68 261.9 134 100.0
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.0e-59 233.4 134 88.8
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.5e-58 229.6 134 87.3
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 4.9e-46 188.0 132 74.2
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.1e-45 186.8 135 73.3
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 2.4e-45 185.7 134 73.1
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.0e-43 180.3 134 69.4
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 6.6e-43 177.6 134 68.7
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 1.9e-42 176.0 134 67.9
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 2.5e-42 175.6 131 70.2
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.8e-40 169.5 133 67.7
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 3.7e-38 161.8 132 61.4
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 1.8e-37 159.5 134 61.2
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 3.9e-35 151.8 130 58.5
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 1.5e-34 149.8 133 55.6
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 1.9e-34 149.4 133 58.6
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 3.3e-34 148.7 134 56.0
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 3.3e-34 148.7 132 54.5
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 1.2e-33 146.7 135 53.3
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 1.6e-33 146.4 134 56.0
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 6.2e-33 144.4 131 55.7
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 6.2e-33 144.4 131 55.7
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 6.2e-33 144.4 134 59.0
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 8.0e-33 144.1 133 55.6
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 1.8e-32 142.9 143 56.6
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 1.8e-32 142.9 133 60.2
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 2.3e-32 142.5 136 55.1
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 4.0e-32 141.7 131 54.2
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 6.8e-32 141.0 131 55.7
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 6.8e-32 141.0 131 54.2
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 6.8e-32 141.0 150 50.0
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.5e-31 139.8 132 53.8
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 2.6e-31 139.0 132 55.3
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 2.6e-31 139.0 129 56.6
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 2.6e-31 139.0 147 51.7
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 3.4e-31 138.7 131 54.2
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 3.4e-31 138.7 131 54.2
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 3.4e-31 138.7 130 55.4
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 4.4e-31 138.3 136 50.7
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 5.8e-31 137.9 131 53.4
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 7.5e-31 137.5 131 53.4
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 7.5e-31 137.5 131 54.2
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 7.5e-31 137.5 135 56.3
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 9.8e-31 137.1 131 52.7
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.3e-30 136.7 93 68.8
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 2.2e-30 136.0 134 55.2
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.9e-30 135.6 133 54.9
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 3.7e-30 135.2 139 49.6
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 6.4e-30 134.4 131 52.7
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 6.4e-30 134.4 130 51.5
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.4e-29 133.3 135 53.3
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 2.4e-29 132.5 130 53.1
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 3.2e-29 132.1 133 53.4
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 3.2e-29 132.1 134 56.0
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 5.4e-29 131.3 134 53.0
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 5.4e-29 131.3 136 51.5
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 9.2e-29 130.6 130 53.1
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 9.2e-29 130.6 132 53.0
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 1.2e-28 130.2 133 50.4
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.7e-28 129.0 134 53.0
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 3.5e-28 128.6 130 54.6
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 3.5e-28 128.6 134 49.3
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.5e-28 128.6 134 51.5
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 4.6e-28 128.3 133 49.6
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 6.0e-28 127.9 134 53.7
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 6.0e-28 127.9 138 51.4
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.0e-27 127.1 131 51.1
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.0e-27 127.1 132 50.0
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.0e-27 127.1 132 48.5
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.3e-27 126.7 134 50.0
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 1.3e-27 126.7 130 49.2
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.7e-27 126.3 134 50.0
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.7e-27 126.3 132 48.5
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 2.3e-27 125.9 133 48.1
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.3e-27 125.9 132 49.2
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 2.3e-27 125.9 128 50.0
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 3.0e-27 125.6 134 51.5
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 6.6e-27 124.4 135 50.4
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 1.1e-26 123.6 132 52.3
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 1.9e-26 122.9 131 49.6
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.5e-26 122.5 134 49.3
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 2.5e-26 122.5 132 48.5
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 2.5e-26 122.5 130 49.2
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 3.3e-26 122.1 133 48.1
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 3.3e-26 122.1 134 51.5
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 4.3e-26 121.7 135 51.9
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 5.6e-26 121.3 134 51.5
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 5.6e-26 121.3 132 53.0
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.2e-25 120.2 128 50.0
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 1.2e-25 120.2 134 49.3
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 2.8e-25 119.0 129 48.8
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 1.8e-24 116.3 136 48.5
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 1.8e-24 116.3 131 50.4
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 3.1e-24 115.5 91 59.3
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 3.1e-24 115.5 136 47.8
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.2e-23 113.6 133 45.9
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 1.5e-23 113.2 133 46.6
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 7.5e-23 110.9 136 52.2
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 1.7e-22 109.8 132 47.0
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.7e-22 108.6 136 44.9
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 6.4e-22 107.8 138 44.9
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 5.4e-21 104.8 133 44.4
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 7.1e-21 104.4 128 43.8
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 7.1e-21 104.4 132 43.2
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 7.1e-21 104.4 128 46.1
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 1.6e-20 103.2 65 61.5
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.5e-20 102.1 129 44.2
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 6.0e-20 101.3 133 43.6
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 3.0e-19 99.0 135 42.2
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 5.1e-19 98.2 140 40.0
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 5.1e-19 98.2 141 42.6
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 6.6e-19 97.8 130 40.0
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 8.6e-19 97.4 129 44.2
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.5e-18 96.7 136 43.4
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 7.3e-18 94.4 133 38.3
Nitab4.5_0011997g0010 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.2e-17 93.6 134 46.3
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 6.2e-17 91.3 132 40.2
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 8.1e-17 90.9 134 35.8
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.1e-16 90.5 131 41.2
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.1e-16 90.5 76 50.0
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.8e-16 89.7 134 44.8
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 3.1e-16 89.0 98 44.9
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 3.4e-15 85.5 77 53.2
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 7.6e-15 84.3 86 44.2
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 3.7e-14 82.0 87 42.5
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.9e-14 81.6 92 43.5
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 6.4e-14 81.3 58 60.3
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 8.4e-14 80.9 93 40.9
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 1.1e-13 80.5 59 59.3
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 4.1e-13 78.6 57 56.1
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 5.4e-13 78.2 66 51.5
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.0e-11 73.9 99 45.5
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 1.3e-11 73.6 58 51.7
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.7e-11 73.2 86 38.4
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 3.0e-11 72.4 62 48.4
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 3.0e-11 72.4 135 31.1
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 6.6e-11 71.2 56 60.7
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.5e-10 70.1 155 33.5
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 1.9e-10 69.7 126 33.3
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 9.6e-10 67.4 75 44.0
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.7e-09 65.1 66 48.5
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 1.4e-08 63.5 88 37.5
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.0e-07 59.7 46 47.8


User provided reference genes

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