Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019044 Solanum tuberosum HOM05D001714 ORTHO05D037672 2.5e-34 148.3 80 100.0
PGSC0003DMG400005976 Solanum tuberosum HOM05D001714 ORTHO05D001932 1.2e-31 139.4 75 98.7
Solyc04g007370.3 Solanum lycopersicum HOM05D001714 ORTHO05D001932 7.7e-31 136.7 75 97.3
Sopen04g002430 Solanum pennellii HOM05D001714 ORTHO05D001932 7.7e-31 136.7 75 97.3
CAN.G25.16 Capsicum annuum HOM05D001714 ORTHO05D001932 4.6e-28 127.5 75 90.7
Peaxi162Scf00564g00049 Petunia axillaris HOM05D001714 ORTHO05D001932 3.3e-26 121.3 75 88.0
Nitab4.5_0005528g0090 Nicotiana tabacum HOM05D001714 ORTHO05D001932 6.3e-25 117.1 74 79.7
Nitab4.5_0001616g0080 Nicotiana tabacum HOM05D001714 ORTHO05D001932 1.4e-24 115.9 75 78.7
Dinv21055 Davidia involucrata HOM05D001714 ORTHO05D001932 4.1e-24 114.4 75 82.7
Peaxi162Scf00753g00115 Petunia axillaris HOM05D001714 ORTHO05D001932 9.1e-24 113.2 75 78.7
CAN.G610.59 Capsicum annuum HOM05D001714 ORTHO05D001932 5.9e-23 110.5 76 75.0
SalBow8G3044 Salvia bowleyana HOM05D001714 ORTHO05D001932 1.3e-22 109.4 75 82.7
SalBow8G5243 Salvia bowleyana HOM05D001714 ORTHO05D001932 1.3e-22 109.4 75 82.7
PGSC0003DMG401014575 Solanum tuberosum HOM05D001714 ORTHO05D001932 1.3e-22 109.4 75 76.0
Dinv31616 Davidia involucrata HOM05D001714 ORTHO05D001932 1.7e-22 109.0 75 78.7
Cc11_g09870 Coffea canephora HOM05D001714 ORTHO05D001932 8.5e-22 106.7 75 76.0
CSS0009142 Camellia sinensis var. sinensis HOM05D001714 ORTHO05D001932 5.5e-21 104.0 75 76.0
Sopen05g004880 Solanum pennellii HOM05D001714 ORTHO05D001932 5.5e-21 104.0 75 74.7
Hma1.2p1_0406F.1_g145930 Hydrangea macrophylla HOM05D001714 ORTHO05D001932 7.2e-21 103.6 75 74.7
Solyc05g009160.3 Solanum lycopersicum HOM05D001714 ORTHO05D001932 3.6e-20 101.3 75 72.0
CSS0009016 Camellia sinensis var. sinensis HOM05D001714 ORTHO05D001932 6.1e-20 100.5 76 75.0
Haze_00625 Corylus avellana HOM05D001714 ORTHO05D001932 1.8e-19 99.0 75 76.0
Hma1.2p1_1149F.1_g261760 Hydrangea macrophylla HOM05D001714 ORTHO05D001932 3.0e-19 98.2 75 72.0
Rhsim09G0105400 Rhododendron simsii HOM05D001714 ORTHO05D001932 5.1e-19 97.4 81 66.7
Cpa.g.sc65.49 Carica papaya HOM05D001714 ORTHO05D001932 8.8e-19 96.7 75 73.3
Migut.O00789 Erythranthe guttata HOM05D001714 ORTHO05D001932 8.8e-19 96.7 76 73.7
Migut.L01045 Erythranthe guttata HOM05D001714 ORTHO05D001932 1.5e-18 95.9 76 72.4
Oeu057739.1 Olea europaea HOM05D001714 ORTHO05D001932 2.6e-18 95.1 75 70.7
QL01p040555 Quercus lobata HOM05D001714 ORTHO05D001932 2.6e-18 95.1 75 70.7
Ciclev10015402m.g Citrus clementina HOM05D001714 ORTHO05D001932 4.4e-18 94.4 75 70.7
vmacro10577 Vaccinium macrocarpon HOM05D001714 ORTHO05D001932 5.7e-18 94.0 80 67.5
Actinidia14909 Actinidia chinensis HOM05D001714 ORTHO05D001932 7.4e-18 93.6 79 73.4
Rhsim12G0085600 Rhododendron simsii HOM05D001714 ORTHO05D001932 2.2e-17 92.0 76 68.4
GSVIVG01011867001 Vitis vinifera HOM05D001714 ORTHO05D001932 6.3e-17 90.5 77 67.5
MD16G1040000 Malus domestica HOM05D001714 ORTHO05D001932 8.2e-17 90.1 75 66.7
TWI31G0418 Tripterygium wilfordii HOM05D001714 ORTHO05D001932 8.2e-17 90.1 75 66.7
Manes.14G105000 Manihot esculenta HOM05D001714 ORTHO05D001932 1.4e-16 89.4 75 68.0
CSS0032560 Camellia sinensis var. sinensis HOM05D001714 ORTHO05D001932 3.1e-16 88.2 75 68.0
MD13G1039100 Malus domestica HOM05D001714 ORTHO05D001932 4.1e-16 87.8 75 65.3
Manes.06G065900 Manihot esculenta HOM05D001714 ORTHO05D001932 4.1e-16 87.8 75 66.7
SGA_v2.0_scaffold36G14547 Striga asiatica HOM05D001714 ORTHO05D001932 7.0e-16 87.0 76 69.7
Potri.010G122300 Populus trichocarpa HOM05D001714 ORTHO05D001932 9.1e-16 86.7 75 61.3
vmacro01390 Vaccinium macrocarpon HOM05D001714 ORTHO05D001932 9.1e-16 86.7 76 64.5
TWI79G0389 Tripterygium wilfordii HOM05D001714 ORTHO05D001932 1.2e-15 86.3 75 62.7
Sabra10G0092400 Salix brachista HOM05D001714 ORTHO05D001932 1.6e-15 85.9 75 61.3
Aqoxy3G00243 Aquilegia oxysepala HOM05D001714 ORTHO05D001932 2.0e-15 85.5 75 65.3
EL10Ac6g14345 Beta vulgaris HOM05D001714 ORTHO05D001932 2.0e-15 85.5 75 66.7
RcHm_v2.0_Chr4g0434801 Rosa chinensis HOM05D001714 ORTHO05D001932 2.0e-15 85.5 77 67.5
THA.LOC104821920 Tarenaya hassleriana HOM05D001714 ORTHO05D001932 2.6e-15 85.1 75 68.0
CANSAT01G0290 Cannabis sativa HOM05D001714 ORTHO05D001932 3.5e-15 84.7 75 68.0
CiPaw.06G018200 Carya illinoinensis HOM05D001714 ORTHO05D001932 3.5e-15 84.7 66 72.7
Potri.008G123200 Populus trichocarpa HOM05D001714 ORTHO05D001932 4.5e-15 84.3 75 61.3
VMungo0720G2784 Vigna mungo HOM05D001714 ORTHO05D001932 4.5e-15 84.3 75 65.3
Eucgr.B02999 Eucalyptus grandis HOM05D001714 ORTHO05D001932 5.9e-15 84.0 76 59.2
TAR371G0262 Trochodendron aralioides HOM05D001714 ORTHO05D001932 7.7e-15 83.6 75 62.7
Lj6A754T52 Lonicera japonica HOM05D001714 ORTHO05D001932 1.3e-14 82.8 77 67.5
PSO782G2780 Papaver somniferum HOM05D001714 ORTHO05D001932 3.8e-14 81.3 75 61.3
AUR62002841 Chenopodium quinoa HOM05D001714 ORTHO05D001932 5.0e-14 80.9 75 61.3
Phvul.007G029600 Phaseolus vulgaris HOM05D001714 ORTHO05D001932 5.0e-14 80.9 75 62.7
AUR62037306 Chenopodium quinoa HOM05D001714 ORTHO05D001932 8.5e-14 80.1 75 60.0
Nn4g23906 Nelumbo nucifera HOM05D001714 ORTHO05D001932 1.5e-13 79.3 75 61.3
Duzib268G0533 Durio zibethinus HOM05D001714 ORTHO05D001932 1.9e-13 79.0 75 61.3
Gohir.A05G321800 Gossypium hirsutum HOM05D001714 ORTHO05D001932 1.9e-13 79.0 75 64.0
PSO063G4445 Papaver somniferum HOM05D001714 ORTHO05D001932 1.9e-13 79.0 75 60.0
DCAR_026742 Daucus carota HOM05D001714 ORTHO05D001932 7.2e-13 77.0 76 61.8
MBI16_g06600_MAGBIO Magnolia biondii HOM05D001714 ORTHO05D001932 7.2e-13 77.0 75 57.3
MSTRG.855 Avicennia marina HOM05D001714 ORTHO05D001932 9.4e-13 76.6 70 64.3
Lalb_Chr02g0145821 Lupinus albus HOM05D001714 ORTHO05D001932 9.4e-13 76.6 75 65.3
PGR102G0672 Punica granatum HOM05D001714 ORTHO05D001932 1.2e-12 76.3 80 61.2
Medtr1g110310 Medicago truncatula HOM05D001714 ORTHO05D001932 2.1e-12 75.5 77 62.3
DCAR_023642 Daucus carota HOM05D001714 ORTHO05D001932 2.7e-12 75.1 75 60.0
Gorai.009G347800 Gossypium raimondii HOM05D001714 ORTHO05D001932 2.7e-12 75.1 75 61.3
TAR629G0834 Trochodendron aralioides HOM05D001714 ORTHO05D037672 2.7e-12 75.1 72 59.7
ClCG01G005830 Citrullus lanatus HOM05D001714 ORTHO05D001932 3.6e-12 74.7 75 58.7
Duzib248G0187 Durio zibethinus HOM05D001714 ORTHO05D001932 3.6e-12 74.7 75 61.3
Lj3A1012T66 Lonicera japonica HOM05D001714 ORTHO05D001932 3.6e-12 74.7 75 61.3
Duzib251G0754 Durio zibethinus HOM05D001714 ORTHO05D001932 4.7e-12 74.3 75 61.3
Eucgr.G02304 Eucalyptus grandis HOM05D001714 ORTHO05D001932 6.1e-12 73.9 79 59.5
Sabra08G0093500 Salix brachista HOM05D001714 ORTHO05D001932 6.1e-12 73.9 75 57.3
Thecc.02G225200 Theobroma cacao HOM05D001714 ORTHO05D001932 6.1e-12 73.9 75 60.0
Gohir.D05G324100 Gossypium hirsutum HOM05D001714 ORTHO05D001932 1.0e-11 73.2 75 60.0
Solyc08g150112.1 Solanum lycopersicum HOM05D001714 ORTHO05D037672 1.0e-11 73.2 62 71.0
COL.COLO4_31278 Corchorus olitorius HOM05D001714 ORTHO05D001932 1.4e-11 72.8 75 58.7
CsaV3_5G034470 Cucumis sativus L. HOM05D001714 ORTHO05D001932 2.3e-11 72.0 75 62.7
Oeu054993.1 Olea europaea HOM05D001714 ORTHO05D001932 2.3e-11 72.0 70 62.9
ClCG00G004260 Citrullus lanatus HOM05D001714 ORTHO05D001932 8.8e-11 70.1 75 60.0
ClCG05G022550 Citrullus lanatus HOM05D001714 ORTHO05D001932 8.8e-11 70.1 75 60.0
Carub.0002s1487 Capsella rubella HOM05D001714 ORTHO05D001932 1.1e-10 69.7 78 56.4
Sp5g23415 Schrenkiella parvula HOM05D001714 ORTHO05D001932 1.1e-10 69.7 77 58.4
Ca_11142_v3 Cicer arietinum L. HOM05D001714 ORTHO05D001932 1.5e-10 69.3 75 57.3
CARHR061120 Cardamine hirsuta HOM05D001714 ORTHO05D001932 2.0e-10 68.9 75 60.0
HPP92_020147 Vanilla planifolia HOM05D001714 ORTHO05D001932 2.0e-10 68.9 75 54.7
CDE12G0279 Ceratophyllum demersum HOM05D001714 ORTHO05D001932 2.6e-10 68.6 75 54.7
FvH4_4g27000 Fragaria vesca HOM05D001714 ORTHO05D001932 3.3e-10 68.2 77 62.3
FAN12G4121 Fragaria x ananassa HOM05D001714 ORTHO05D001932 3.3e-10 68.2 77 62.3
BcaC03g14941 Brassica carinata HOM05D001714 ORTHO05D001932 4.4e-10 67.8 77 59.7
BolC2t08552H Brassica oleracea HOM05D001714 ORTHO05D001932 4.4e-10 67.8 77 59.7
Lalb_Chr06g0165951 Lupinus albus HOM05D001714 ORTHO05D001932 4.4e-10 67.8 74 60.8
CARHR061090 Cardamine hirsuta HOM05D001714 ORTHO05D001932 5.7e-10 67.4 78 53.8
Glyma.10G272200 Glycine max HOM05D001714 ORTHO05D001932 7.5e-10 67.0 75 56.0
MELO3C005346.2 Cucumis melo HOM05D001714 ORTHO05D001932 9.7e-10 66.6 76 56.6
CsaV3_5G028860 Cucumis sativus L. HOM05D001714 ORTHO05D001932 9.7e-10 66.6 76 56.6
DCAR_007253 Daucus carota HOM05D001714 ORTHO05D001932 9.7e-10 66.6 76 55.3
Prupe.1G314100 Prunus persica HOM05D001714 ORTHO05D001932 9.7e-10 66.6 75 58.7
Sp5g23420 Schrenkiella parvula HOM05D001714 ORTHO05D001932 9.7e-10 66.6 77 55.8
Sed0010220 Sechium edule HOM05D001714 ORTHO05D001932 1.3e-09 66.2 77 55.8
AL2G27230 Arabidopsis lyrata HOM05D001714 ORTHO05D001932 1.7e-09 65.9 77 54.5
unitig_22.g6561 Utricularia gibba HOM05D001714 ORTHO05D001932 2.2e-09 65.5 62 58.1
BcaC08g46294 Brassica carinata HOM05D001714 ORTHO05D001932 2.8e-09 65.1 77 53.2
A07p34780 Brassica napus HOM05D001714 ORTHO05D001932 2.8e-09 65.1 77 53.2
C06p41610 Brassica napus HOM05D001714 ORTHO05D001932 2.8e-09 65.1 77 53.2
BolC6t39264H Brassica oleracea HOM05D001714 ORTHO05D001932 2.8e-09 65.1 77 53.2
BraA07t31095Z Brassica rapa HOM05D001714 ORTHO05D001932 2.8e-09 65.1 77 53.2
Glyma.20G117900 Glycine max HOM05D001714 ORTHO05D001932 2.8e-09 65.1 75 56.0
Os01g0512100 Oryza sativa ssp. japonica HOM05D001714 ORTHO05D001932 2.8e-09 65.1 75 56.0
Psat6g225760 Pisum sativum HOM05D001714 ORTHO05D001932 3.7e-09 64.7 72 55.6
CDE06G0241 Ceratophyllum demersum HOM05D001714 ORTHO05D001932 6.3e-09 63.9 75 52.0
TPR.G4943 Trifolium pratense HOM05D001714 ORTHO05D001932 6.3e-09 63.9 72 54.2
ECA234G3764 Erigeron canadensis HOM05D001714 ORTHO05D001932 1.8e-08 62.4 77 53.2
FAN22G1194 Fragaria x ananassa HOM05D000548 ORTHO05D001552 1.8e-08 62.4 77 61.0
Sc04g0006150 Simmondsia chinensis HOM05D001714 ORTHO05D001932 1.8e-08 62.4 69 55.1
Sc04g0006170 Simmondsia chinensis HOM05D001714 ORTHO05D001932 1.8e-08 62.4 69 55.1
BcaB05g24374 Brassica carinata HOM05D001714 ORTHO05D001932 3.1e-08 61.6 77 58.4
Zm00001eb137150 Zea mays HOM05D001714 ORTHO05D001932 4.1e-08 61.2 75 53.3
Lj5g0008465 Lotus japonicus HOM05D001714 ORTHO05D001932 5.3e-08 60.8 76 52.6
BcaB03g15814 Brassica carinata HOM05D001714 ORTHO05D001932 1.2e-07 59.7 77 49.4
A02p14930 Brassica napus HOM05D001714 ORTHO05D001932 2.0e-07 58.9 77 55.8
BraA02t06560Z Brassica rapa HOM05D001714 ORTHO05D001932 2.0e-07 58.9 77 55.8
ATR1125G032 Amborella trichopoda HOM05D001714 ORTHO05D001932 3.5e-07 58.2 76 47.4
SEGI_34619 Sequoiadendron giganteum HOM05D001714 ORTHO05D001932 4.5e-07 57.8 74 50.0
Thhalv10018636m.g Eutrema salsugineum HOM05D001714 ORTHO05D001932 5.9e-07 57.4 77 50.6
Lalb_Chr21g0308801 Lupinus albus HOM05D001714 ORTHO05D001932 7.7e-07 57.0 72 52.8
Aqoxy5G01274 Aquilegia oxysepala HOM05D001714 ORTHO05D001932 1.0e-06 56.6 77 53.2
FAN07G2745 Fragaria x ananassa HOM05D001714 ORTHO05D001932 1.3e-06 56.2 77 55.8
HanXRQChr17g0567121 Helianthus annuus HOM05D001714 ORTHO05D001932 1.3e-06 56.2 77 49.4
AT1G68370 Arabidopsis thaliana HOM05D001714 ORTHO05D001932 2.9e-06 55.1 77 48.1
Thhalv10018637m.g Eutrema salsugineum HOM05D001714 ORTHO05D001932 6.5e-06 53.9 77 51.9
Lsat_1_v5_gn_3_57780 Lactuca sativa HOM05D001714 ORTHO05D001932 8.5e-06 53.5 76 51.3


User provided reference genes

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