Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 4.1e-57 224.6 117 100.0
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.6e-53 211.5 117 91.5
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.6e-53 211.5 117 91.5
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 6.1e-53 210.7 117 89.7
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.8e-52 209.1 117 90.6
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 8.8e-52 206.8 117 89.7
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 8.8e-52 206.8 117 89.7
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 8.8e-52 206.8 117 89.7
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.2e-51 206.5 117 88.0
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.5e-51 206.1 117 88.0
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 2.0e-51 205.7 117 88.9
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 2.0e-51 205.7 117 87.2
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 7.5e-51 203.8 117 85.5
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.7e-50 202.6 117 85.5
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.7e-50 202.6 117 85.5
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.2e-50 202.2 117 86.3
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.2e-50 202.2 117 85.5
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.2e-50 202.2 117 86.3
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 4.8e-50 201.1 117 88.0
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 4.8e-50 201.1 117 86.3
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 1.1e-49 199.9 117 84.6
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.4e-49 198.7 117 85.5
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 4.1e-49 198.0 117 85.5
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 4.1e-49 198.0 118 85.6
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 4.1e-49 198.0 116 85.3
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 4.1e-49 198.0 117 83.8
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 5.3e-49 197.6 118 85.6
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 7.0e-49 197.2 117 86.3
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 7.0e-49 197.2 117 82.9
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 7.0e-49 197.2 116 86.2
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 7.0e-49 197.2 116 85.3
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 9.1e-49 196.8 117 84.6
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 9.1e-49 196.8 117 85.5
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 9.1e-49 196.8 114 86.0
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 9.1e-49 196.8 114 86.0
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 9.1e-49 196.8 117 85.5
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.6e-48 196.1 117 84.6
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 2.0e-48 195.7 117 86.3
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 2.7e-48 195.3 109 89.0
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 3.5e-48 194.9 117 85.5
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 3.5e-48 194.9 118 83.1
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 4.5e-48 194.5 117 85.5
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 4.5e-48 194.5 117 83.8
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 5.9e-48 194.1 117 81.2
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 5.9e-48 194.1 118 84.7
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 5.9e-48 194.1 114 84.2
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 7.7e-48 193.7 114 86.0
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 7.7e-48 193.7 113 85.8
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 7.7e-48 193.7 117 82.9
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.0e-47 193.4 117 83.8
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 1.0e-47 193.4 118 84.7
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.0e-47 193.4 114 86.0
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 1.3e-47 193.0 116 82.8
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.3e-47 193.0 117 85.5
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.3e-47 193.0 110 88.2
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 1.3e-47 193.0 117 82.9
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 1.7e-47 192.6 116 81.9
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.7e-47 192.6 118 83.9
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.7e-47 192.6 118 83.9
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.7e-47 192.6 118 83.9
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.7e-47 192.6 117 83.8
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.7e-47 192.6 117 83.8
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.7e-47 192.6 117 83.8
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 2.2e-47 192.2 117 85.5
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 2.2e-47 192.2 114 84.2
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 3.8e-47 191.4 119 83.2
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 3.8e-47 191.4 117 83.8
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 3.8e-47 191.4 117 83.8
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 5.0e-47 191.0 117 83.8
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 5.0e-47 191.0 117 82.9
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 6.5e-47 190.7 117 83.8
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 8.5e-47 190.3 117 83.8
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.5e-47 190.3 118 83.1
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 8.5e-47 190.3 117 82.9
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.9e-46 189.1 117 83.8
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 2.5e-46 188.7 117 82.9
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 2.5e-46 188.7 117 82.9
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 2.5e-46 188.7 117 82.9
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.5e-46 188.7 117 82.9
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 2.5e-46 188.7 117 82.9
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.5e-46 188.7 117 82.9
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 3.2e-46 188.3 114 80.7
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 4.2e-46 188.0 117 82.1
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 5.5e-46 187.6 114 84.2
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 7.2e-46 187.2 116 80.2
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 9.4e-46 186.8 117 81.2
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 9.4e-46 186.8 117 82.1
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 9.4e-46 186.8 117 82.1
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 9.4e-46 186.8 114 85.1
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 9.4e-46 186.8 117 82.1
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-45 186.4 117 81.2
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-45 186.4 117 81.2
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-45 186.4 117 81.2
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 1.2e-45 186.4 117 81.2
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.2e-45 186.4 116 81.9
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.2e-45 186.4 116 81.9
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 1.6e-45 186.0 113 81.4
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.6e-45 186.0 116 81.9
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 2.1e-45 185.7 117 81.2
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 2.1e-45 185.7 117 81.2
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 2.1e-45 185.7 117 82.1
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 2.1e-45 185.7 117 81.2
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 2.7e-45 185.3 116 82.8
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 3.6e-45 184.9 117 80.3
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 3.6e-45 184.9 117 79.5
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 3.6e-45 184.9 112 83.0
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 3.6e-45 184.9 117 79.5
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 3.6e-45 184.9 116 79.3
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 4.7e-45 184.5 114 83.3
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 4.7e-45 184.5 117 80.3
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 6.1e-45 184.1 110 84.5
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 8.0e-45 183.7 117 81.2
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 1.0e-44 183.3 110 81.8
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.4e-44 183.0 114 79.8
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 1.4e-44 183.0 116 80.2
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.8e-44 182.6 117 79.5
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 4.0e-44 181.4 110 80.9
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 5.2e-44 181.0 109 84.4
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 5.2e-44 181.0 110 83.6
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 6.8e-44 180.6 112 81.2
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.2e-43 179.9 120 79.2
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 1.5e-43 179.5 109 78.9
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 5.7e-43 177.6 117 74.4
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 5.7e-43 177.6 113 77.9
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 1.3e-42 176.4 113 77.9
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 1.7e-42 176.0 153 65.4
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 2.8e-42 175.3 113 77.9
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.4e-41 172.2 114 72.8
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 3.1e-41 171.8 113 76.1
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 4.5e-40 167.9 89 94.4
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.5e-38 162.2 174 55.7
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 3.6e-37 158.3 107 70.1
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.2e-36 154.5 118 72.9
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.6e-35 152.1 88 83.0
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 1.3e-34 149.8 201 47.3
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 5.9e-32 141.0 73 93.2
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 5.9e-32 141.0 72 93.1
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 7.8e-32 140.6 90 80.0
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 7.8e-32 140.6 89 80.9
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 6.6e-31 137.5 82 85.4
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 6.6e-31 137.5 103 71.8
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.1e-30 136.7 89 79.8
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.9e-30 136.0 90 77.8
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.6e-29 132.9 105 67.6
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.6e-29 132.9 105 67.6
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.6e-29 132.9 89 77.5
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.8e-28 129.4 86 77.9
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 1.8e-28 129.4 67 91.0
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 9.8e-27 123.6 109 59.6
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 9.2e-25 117.1 105 49.5
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 1.0e-23 113.6 74 82.4
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 2.3e-23 112.5 80 73.8
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 8.6e-23 110.5 74 78.4
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 7.3e-22 107.5 87 66.7
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.1e-20 103.6 73 74.0
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.2e-19 100.1 104 59.6
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 4.4e-19 98.2 74 67.6
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 4.6e-16 88.2 47 91.5
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 4.6e-08 61.6 52 65.4
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 1.9e-06 56.2 47 63.8
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 2.5e-06 55.8 44 65.9
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 3.3e-06 55.5 39 69.2
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 3.3e-06 55.5 39 69.2


User provided reference genes

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