Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 3.7e-157 558.1 276 100.0
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 1.1e-148 530.0 276 94.6
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.8e-135 486.1 280 86.4
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.8e-135 486.1 240 97.5
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 4.2e-129 464.9 273 85.7
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 2.4e-108 396.0 271 70.5
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 7.0e-108 394.4 248 74.6
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 1.6e-107 393.3 248 74.6
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.7e-106 389.8 272 68.8
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.7e-106 389.8 278 71.2
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.1e-105 387.1 278 67.6
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 2.5e-105 386.0 279 69.2
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 3.3e-105 385.6 221 80.5
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.3e-105 385.2 245 73.1
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 4.3e-105 385.2 275 67.3
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 9.5e-105 384.0 226 79.2
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 1.2e-104 383.6 244 73.4
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.6e-104 383.3 229 78.6
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 2.1e-104 382.9 233 77.7
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 2.8e-104 382.5 282 67.0
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 3.6e-104 382.1 289 67.1
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 8.0e-104 380.9 281 68.3
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 8.0e-104 380.9 226 78.3
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 1.1e-103 380.6 226 77.0
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.3e-103 379.4 283 68.2
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 4.0e-103 378.6 226 78.8
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 5.2e-103 378.3 283 67.8
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 8.9e-103 377.5 221 79.6
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 8.9e-103 377.5 243 72.8
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 5.8e-102 374.8 221 79.2
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 7.5e-102 374.4 282 67.0
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 7.5e-102 374.4 226 77.0
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 7.5e-102 374.4 226 77.0
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 9.8e-102 374.0 284 66.5
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 1.3e-101 373.6 288 65.3
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.7e-101 373.2 282 66.0
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 1.1e-100 370.5 283 63.6
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.9e-100 369.8 288 62.5
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 1.9e-100 369.8 221 78.3
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.9e-100 369.8 297 62.6
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 3.2e-100 369.0 276 68.5
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 4.1e-100 368.6 250 70.8
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 4.1e-100 368.6 278 66.2
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 5.4e-100 368.2 287 64.8
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 7.0e-100 367.9 247 68.8
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 9.2e-100 367.5 275 66.9
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 1.6e-99 366.7 290 64.1
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 1.3e-98 363.6 285 66.3
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.3e-98 362.8 277 64.3
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 3.0e-98 362.5 226 73.5
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 3.9e-98 362.1 275 67.3
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 3.9e-98 362.1 274 63.9
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.9e-97 359.8 248 68.5
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 2.5e-97 359.4 230 72.6
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 3.3e-97 359.0 228 73.7
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.3e-97 358.6 277 63.5
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 5.6e-97 358.2 288 62.8
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 7.3e-97 357.8 294 65.3
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 2.1e-96 356.3 277 63.2
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 2.8e-96 355.9 249 67.9
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.6e-96 355.5 277 62.8
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.4e-95 353.6 230 71.7
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 1.8e-95 353.2 233 70.8
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 3.1e-95 352.4 235 69.8
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 5.2e-95 351.7 235 70.2
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 5.2e-95 351.7 183 90.2
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 8.9e-95 350.9 237 68.4
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.2e-94 350.5 287 61.3
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 1.5e-94 350.1 229 70.7
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 1.5e-94 350.1 290 61.7
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 2.0e-94 349.7 280 65.7
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 2.0e-94 349.7 229 70.3
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 7.5e-94 347.8 276 62.0
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 1.3e-93 347.1 291 59.5
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.7e-93 346.7 290 61.4
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 2.2e-93 346.3 233 70.0
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.1e-92 344.0 297 62.0
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 1.4e-92 343.6 290 60.7
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 1.9e-92 343.2 259 64.9
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 3.2e-92 342.4 235 67.2
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 5.4e-92 341.7 221 70.6
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 5.4e-92 341.7 284 63.0
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 1.6e-91 340.1 279 60.9
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 3.5e-91 339.0 281 60.1
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 6.0e-91 338.2 275 61.1
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.0e-90 337.4 282 58.9
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 5.1e-90 335.1 282 59.6
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 9.9e-86 320.9 229 63.3
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 9.9e-86 320.9 253 60.9
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.3e-85 320.5 296 54.7
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.1e-84 317.4 233 65.2
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 1.2e-83 313.9 201 70.1
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 6.6e-82 308.1 164 89.0
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 6.6e-82 308.1 230 65.2
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 1.9e-81 306.6 271 58.3
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.8e-80 302.8 221 62.4
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 6.2e-80 301.6 274 55.5
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.4e-79 300.4 277 57.0
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.4e-79 299.7 219 66.2
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 3.1e-79 299.3 183 77.0
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 9.0e-79 297.7 233 63.5
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 2.6e-78 296.2 229 62.4
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 7.6e-78 294.7 221 63.3
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 7.6e-78 294.7 183 75.4
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 2.9e-77 292.7 256 58.2
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 3.8e-77 292.4 229 61.6
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 6.4e-77 291.6 276 54.3
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 8.4e-77 291.2 271 57.2
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.1e-76 290.8 271 57.2
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 5.4e-76 288.5 238 60.9
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 6.0e-75 285.0 175 76.6
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 9.6e-73 277.7 179 70.9
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.2e-67 260.8 291 53.3
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 2.0e-62 243.4 233 54.5
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 1.3e-61 240.7 193 62.2
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 9.0e-55 218.0 265 44.2
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 1.8e-47 193.7 116 78.4
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 5.3e-47 192.2 279 42.7
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 3.4e-46 189.5 261 43.3
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 7.7e-46 188.3 120 67.5
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 2.5e-44 183.3 309 35.9
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 5.1e-42 175.6 147 56.5
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 1.8e-39 167.2 113 69.9
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.0e-38 163.7 119 63.9
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.6e-30 136.7 115 55.7
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 5.0e-29 132.5 77 77.9
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 2.7e-27 126.7 181 46.4
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 1.0e-26 124.8 72 76.4
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.2e-26 122.5 234 34.2
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.7e-24 117.5 77 68.8
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 4.8e-24 115.9 81 65.4
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 1.4e-15 87.8 78 57.7
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 5.0e-13 79.3 56 60.7
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 4.2e-12 76.3 85 45.9


User provided reference genes

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