Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 1.0e-108 396.7 198 100.0
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 3.5e-101 371.7 198 93.9
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 4.6e-101 371.3 198 93.9
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 2.7e-85 318.9 208 80.3
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 6.6e-84 314.3 201 80.1
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 6.2e-82 307.8 203 78.8
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 2.5e-62 242.7 202 63.4
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 8.4e-55 217.6 198 56.6
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 8.4e-55 217.6 198 56.6
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 1.9e-54 216.5 211 56.9
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 1.9e-51 206.5 200 54.0
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 4.3e-51 205.3 204 55.9
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 1.8e-49 199.9 206 51.0
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 1.8e-49 199.9 205 53.7
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 2.0e-48 196.4 202 53.5
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 4.5e-48 195.3 222 50.0
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 1.7e-47 193.4 204 50.5
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 2.2e-47 193.0 192 55.2
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 3.8e-47 192.2 211 52.1
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 5.0e-47 191.8 200 52.0
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 5.0e-47 191.8 211 52.1
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 6.5e-47 191.4 211 51.7
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 8.5e-47 191.0 196 55.1
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 8.5e-47 191.0 188 53.2
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 1.1e-46 190.7 211 50.7
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 1.1e-46 190.7 199 51.8
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 5.5e-46 188.3 205 50.2
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 9.4e-46 187.6 196 52.6
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 1.6e-45 186.8 200 51.5
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 2.7e-45 186.0 205 50.2
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 3.6e-45 185.7 205 52.7
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 3.6e-45 185.7 187 51.3
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 2.3e-44 183.0 202 52.0
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 3.0e-44 182.6 207 52.2
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 3.9e-44 182.2 204 48.0
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 1.1e-43 180.6 206 51.0
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 1.1e-43 180.6 195 51.8
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 4.3e-43 178.7 206 49.5
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 4.3e-43 178.7 210 50.5
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 5.7e-43 178.3 215 49.8
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 9.7e-43 177.6 187 52.4
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 9.7e-43 177.6 207 48.8
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 9.7e-43 177.6 199 49.7
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 1.7e-42 176.8 203 51.2
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.2e-42 176.4 204 49.5
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 3.7e-42 175.6 202 49.5
RcHm_v2.0_Chr7g0241631 Rosa chinensis HOM05D006641 ORTHO05D007573 3.7e-42 175.6 204 48.5
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 3.7e-42 175.6 205 48.3
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 6.3e-42 174.9 206 50.0
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 6.3e-42 174.9 202 48.5
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 6.3e-42 174.9 207 49.3
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 8.2e-42 174.5 212 48.6
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.4e-41 173.7 204 48.0
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 1.4e-41 173.7 209 51.2
FvH4_5g39350 Fragaria vesca HOM05D006641 ORTHO05D007573 1.8e-41 173.3 204 49.0
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 2.4e-41 172.9 207 48.3
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 2.4e-41 172.9 207 48.3
FAN08G0230 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.4e-41 172.9 204 49.0
FAN08G2922 Fragaria x ananassa HOM05D006641 ORTHO05D007573 2.4e-41 172.9 204 49.0
FAN18G1732 Fragaria x ananassa HOM05D001136 ORTHO05D007573 2.4e-41 172.9 204 49.0
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 3.1e-41 172.6 191 48.2
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 3.1e-41 172.6 213 48.4
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 4.1e-41 172.2 196 49.0
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 4.1e-41 172.2 196 46.4
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 6.9e-41 171.4 191 52.9
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 9.1e-41 171.0 190 47.9
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 1.2e-40 170.6 193 47.7
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 2.0e-40 169.9 184 48.9
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 2.0e-40 169.9 202 49.5
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 2.0e-40 169.9 202 46.5
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 3.4e-40 169.1 204 48.0
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 4.5e-40 168.7 205 48.8
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 1.0e-39 167.5 201 45.8
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 1.3e-39 167.2 198 47.5
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 2.9e-39 166.0 200 47.0
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 2.9e-39 166.0 199 46.7
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 1.1e-38 164.1 185 52.4
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 1.4e-38 163.7 200 45.5
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 1.4e-38 163.7 202 48.0
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 1.9e-38 163.3 198 45.5
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 1.9e-38 163.3 206 44.2
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 2.5e-38 162.9 203 45.8
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 2.5e-38 162.9 201 44.3
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 4.2e-38 162.2 197 49.2
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 5.5e-38 161.8 197 49.2
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 7.2e-38 161.4 187 50.8
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 7.2e-38 161.4 206 44.7
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 1.6e-37 160.2 194 49.0
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 1.6e-37 160.2 200 45.0
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.6e-37 160.2 197 48.7
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 4.7e-37 158.7 201 43.8
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.0e-36 157.5 188 47.9
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 1.8e-36 156.8 200 43.5
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 2.3e-36 156.4 208 45.7
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 5.1e-36 155.2 206 43.7
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 6.7e-36 154.8 200 43.5
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 8.8e-36 154.5 204 46.1
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.5e-35 153.7 188 44.1
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.3e-34 150.6 188 44.1
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 1.3e-34 150.6 188 44.1
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 3.1e-33 146.0 167 47.3
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 3.1e-33 146.0 167 47.3
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 5.5e-30 135.2 209 43.1
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 7.2e-30 134.8 208 40.9
CiPaw.08G090800 Carya illinoinensis HOM05D006641 ORTHO05D007573 1.6e-29 133.7 205 41.0
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 2.1e-29 133.3 211 43.1
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 1.1e-25 120.9 218 39.9
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 3.8e-23 112.5 214 38.3
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 5.0e-23 112.1 223 38.6
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 6.5e-23 111.7 223 38.6
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 6.5e-23 111.7 223 38.6
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 4.2e-22 109.0 205 40.0
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 9.4e-22 107.8 205 39.5
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 1.6e-21 107.1 224 36.2
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 2.7e-21 106.3 204 38.7
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 2.7e-21 106.3 215 37.7
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 2.7e-21 106.3 222 36.0
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 6.1e-21 105.1 198 38.9
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 8.0e-21 104.8 171 38.6
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 2.0e-19 100.1 227 37.0
Eucgr.K03540 Eucalyptus grandis HOM05D006641 ORTHO05D007573 9.8e-19 97.8 208 35.6
TPR.G4797 Trifolium pratense HOM05D006641 ORTHO05D007573 9.8e-19 97.8 150 40.7
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 1.3e-18 97.4 212 32.5
Os03g0305200 Oryza sativa ssp. japonica HOM05D006641 ORTHO05D007573 3.7e-18 95.9 220 31.4
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 6.3e-18 95.1 219 34.2
CDE05G1007 Ceratophyllum demersum HOM05D006641 ORTHO05D007573 8.5e-15 84.7 121 40.5
Actinidia21410 Actinidia chinensis HOM05D000446 ORTHO05D000321 1.4e-12 77.4 100 44.0
TWI75G0789 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 1.4e-12 77.4 103 43.7
HPP92_018375 Vanilla planifolia HOM05D006641 ORTHO05D007573 4.4e-11 72.4 190 28.9
Cc04_g06130 Coffea canephora HOM05D007478 ORTHO05D001700 8.3e-10 68.2 181 32.0
Zm00001eb014520 Zea mays HOM05D006641 ORTHO05D007573 1.4e-09 67.4 202 30.2
FAN13G0345 Fragaria x ananassa HOM05D007478 ORTHO05D001700 2.4e-09 66.6 179 30.2
FvH4_5g17470 Fragaria vesca HOM05D007478 ORTHO05D001700 4.1e-09 65.9 179 29.6
FAN08G3433 Fragaria x ananassa HOM05D007478 ORTHO05D001700 4.1e-09 65.9 179 30.7
RcHm_v2.0_Chr7g0178221 Rosa chinensis HOM05D007478 ORTHO05D001700 7.0e-09 65.1 181 30.4
COL.COLO4_03618 Corchorus olitorius HOM05D001935 ORTHO05D001700 9.2e-09 64.7 184 28.8
FAN18G0488 Fragaria x ananassa HOM05D007478 ORTHO05D001700 9.2e-09 64.7 179 29.1
Lj4g0014270 Lotus japonicus HOM05D007478 ORTHO05D001700 2.0e-08 63.5 178 29.8
SalBow6G0372 Salvia bowleyana HOM05D006641 ORTHO05D007573 4.5e-08 62.4 55 50.9
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 4.5e-08 62.4 185 30.8
VMungo0251G2682 Vigna mungo HOM05D007478 ORTHO05D001700 1.0e-07 61.2 178 31.5
ATR0326G051 Amborella trichopoda HOM05D001935 ORTHO05D001700 2.3e-07 60.1 178 29.2
TAR629G0885 Trochodendron aralioides HOM05D007478 ORTHO05D001700 2.3e-07 60.1 94 39.4
COL.COLO4_05000 Corchorus olitorius HOM05D007478 ORTHO05D001700 2.9e-07 59.7 178 30.9
ATR0326G068 Amborella trichopoda HOM05D001935 ORTHO05D001700 5.0e-07 58.9 90 35.6
Aqoxy5G00397 Aquilegia oxysepala HOM05D007478 ORTHO05D001700 5.0e-07 58.9 114 35.1
Glyma.05G246800 Glycine max HOM05D007478 ORTHO05D001700 5.0e-07 58.9 111 38.7
Cpa.g.sc3.382 Carica papaya HOM05D007478 ORTHO05D001700 6.6e-07 58.5 182 27.5
DCAR_007278 Daucus carota HOM05D001935 ORTHO05D001700 6.6e-07 58.5 88 39.8
DCAR_025887 Daucus carota HOM05D001935 ORTHO05D001700 8.6e-07 58.2 68 42.6
Gohir.A11G059300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 8.6e-07 58.2 189 27.0
Thecc.03G058400 Theobroma cacao HOM05D007478 ORTHO05D001700 8.6e-07 58.2 112 34.8
Gorai.001G084400 Gossypium raimondii HOM05D001935 ORTHO05D001700 1.1e-06 57.8 185 27.0
Gorai.007G068500 Gossypium raimondii HOM05D002829 ORTHO05D003124 1.1e-06 57.8 189 27.0
QL10p030590 Quercus lobata HOM05D007478 ORTHO05D001700 1.1e-06 57.8 112 37.5
Ca_17182_v3 Cicer arietinum L. HOM05D007478 ORTHO05D001700 1.5e-06 57.4 191 27.7
Gohir.D11G063400 Gossypium hirsutum HOM05D002829 ORTHO05D003124 1.5e-06 57.4 184 27.7
FAN04G1368 Fragaria x ananassa HOM05D007478 ORTHO05D001700 1.9e-06 57.0 108 34.3
Glyma.08G055200 Glycine max HOM05D007478 ORTHO05D001700 2.5e-06 56.6 180 27.8
Gohir.D07G079675 Gossypium hirsutum HOM05D001935 ORTHO05D001700 2.5e-06 56.6 184 27.7
MD06G1228100 Malus domestica HOM05D007478 ORTHO05D001700 2.5e-06 56.6 186 25.8
Manes.14G171900 Manihot esculenta HOM05D007478 ORTHO05D001700 2.5e-06 56.6 68 41.2
SEGI_14616 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 2.5e-06 56.6 184 28.3
Lj6P749T50 Lonicera japonica HOM05D001935 ORTHO05D001700 3.3e-06 56.2 182 29.1
Phvul.002G330900 Phaseolus vulgaris HOM05D007478 ORTHO05D001700 4.3e-06 55.8 178 29.8
Potri.012G045600 Populus trichocarpa HOM05D007478 ORTHO05D001700 4.3e-06 55.8 179 27.9
Potri.015G036800 Populus trichocarpa HOM05D007478 ORTHO05D001700 5.6e-06 55.5 181 26.5
THA.LOC104802908 Tarenaya hassleriana HOM05D001935 ORTHO05D001700 5.6e-06 55.5 190 28.9
TAR622G0550 Trochodendron aralioides HOM05D002829 ORTHO05D003124 5.6e-06 55.5 204 28.4
Cpa.g.sc38.55 Carica papaya HOM05D002829 ORTHO05D003124 7.3e-06 55.1 193 25.4
CiPaw.15G144400 Carya illinoinensis HOM05D007478 ORTHO05D001700 7.3e-06 55.1 109 36.7
Solyc01g009490.1 Solanum lycopersicum HOM05D001935 ORTHO05D001700 7.3e-06 55.1 83 37.3
Lsat_1_v5_gn_3_82980 Lactuca sativa HOM05D001935 ORTHO05D001700 9.5e-06 54.7 73 37.0
Lalb_Chr05g0221601 Lupinus albus HOM05D007478 ORTHO05D001700 9.5e-06 54.7 96 38.5
Potri.001G070700 Populus trichocarpa HOM05D002829 ORTHO05D003124 9.5e-06 54.7 188 28.7
TWI81G0631 Tripterygium wilfordii HOM05D007478 ORTHO05D001700 9.5e-06 54.7 185 27.6


User provided reference genes

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