Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 1.5e-200 702.6 347 100.0
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 4.9e-175 617.8 344 84.6
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 4.9e-175 617.8 343 84.8
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 6.4e-175 617.5 346 85.0
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 8.4e-175 617.1 343 85.7
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 1.4e-174 616.3 347 85.0
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 2.4e-174 615.5 343 85.4
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 1.6e-173 612.8 342 85.4
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 1.6e-173 612.8 343 84.3
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 1.6e-173 612.8 343 85.1
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 2.1e-173 612.5 342 85.4
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 4.6e-173 611.3 343 84.5
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 4.6e-173 611.3 343 84.3
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 7.8e-173 610.5 343 84.3
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 1.3e-172 609.8 343 83.7
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 1.3e-172 609.8 343 83.7
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 1.7e-172 609.4 342 85.1
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 1.7e-172 609.4 343 84.3
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 3.0e-172 608.6 342 84.8
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 3.9e-172 608.2 342 83.3
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 6.6e-172 607.4 343 83.4
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 1.1e-171 606.7 344 82.8
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 1.5e-171 606.3 343 83.4
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 1.5e-171 606.3 343 83.1
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 1.9e-171 605.9 343 84.3
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.9e-171 605.9 343 84.0
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 2.5e-171 605.5 343 83.7
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 3.3e-171 605.1 343 83.4
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 3.3e-171 605.1 342 83.6
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 4.3e-171 604.7 344 83.1
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 7.3e-171 604.0 342 83.0
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 7.3e-171 604.0 344 82.6
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 7.3e-171 604.0 347 81.8
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 7.3e-171 604.0 343 83.1
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 9.6e-171 603.6 343 83.4
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 9.6e-171 603.6 343 83.1
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 9.6e-171 603.6 343 83.1
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 1.3e-170 603.2 343 83.1
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 1.6e-170 602.8 342 83.9
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.6e-170 602.8 343 84.0
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 2.8e-170 602.1 343 82.8
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 6.2e-170 600.9 343 82.8
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 6.2e-170 600.9 343 82.5
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 6.2e-170 600.9 343 82.5
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 6.2e-170 600.9 342 83.9
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 8.1e-170 600.5 342 82.7
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 8.1e-170 600.5 342 82.7
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.1e-169 600.1 342 84.2
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 1.8e-169 599.4 360 81.1
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 2.4e-169 599.0 342 82.2
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 2.4e-169 599.0 342 83.6
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 4.0e-169 598.2 344 81.7
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 5.3e-169 597.8 342 82.5
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 5.3e-169 597.8 346 80.9
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.5e-168 596.3 342 82.5
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 3.4e-168 595.1 343 80.8
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 3.4e-168 595.1 344 81.7
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 5.8e-168 594.3 347 81.8
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 9.9e-168 593.6 360 79.7
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 1.3e-167 593.2 342 82.2
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 1.7e-167 592.8 338 82.8
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 2.2e-167 592.4 343 80.8
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 4.9e-167 591.3 352 81.0
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 4.9e-167 591.3 347 80.4
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 1.1e-166 590.1 343 79.0
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.4e-166 589.7 343 80.8
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 1.9e-166 589.3 343 81.0
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 4.2e-166 588.2 343 80.5
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 4.2e-166 588.2 342 81.0
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 5.4e-166 587.8 346 80.9
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 5.4e-166 587.8 343 81.0
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 7.1e-166 587.4 357 79.0
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 7.1e-166 587.4 342 81.6
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 7.1e-166 587.4 343 81.3
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 1.2e-165 586.6 343 79.9
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 2.1e-165 585.9 343 80.5
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.5e-165 585.1 343 81.3
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.5e-165 585.1 343 81.3
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 4.6e-165 584.7 347 81.0
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 4.6e-165 584.7 343 79.6
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 2.3e-164 582.4 343 79.3
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 2.3e-164 582.4 343 79.9
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 3.0e-164 582.0 343 80.5
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 5.1e-164 581.3 346 80.1
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 8.7e-164 580.5 343 79.6
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.6e-162 576.2 341 79.5
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 1.6e-162 576.2 344 80.8
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 4.8e-162 574.7 343 77.8
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 1.4e-161 573.2 343 78.1
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.1e-161 572.0 390 71.8
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 6.9e-161 570.9 362 76.8
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.6e-160 568.9 343 79.6
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 4.5e-160 568.2 343 79.9
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 2.2e-159 565.8 317 85.5
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 3.8e-159 565.1 350 80.0
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 8.4e-159 563.9 342 78.7
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 1.6e-157 559.7 343 76.7
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 1.3e-154 550.1 349 76.5
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 3.7e-154 548.5 432 64.6
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 4.5e-152 541.6 354 73.7
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 2.9e-151 538.9 341 73.9
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 3.0e-148 528.9 448 60.3
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 3.3e-147 525.4 310 81.3
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 1.3e-146 523.5 344 72.1
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 2.8e-146 522.3 341 73.0
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.3e-143 513.5 345 72.8
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 1.1e-142 510.4 339 72.9
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 3.9e-140 501.9 343 72.3
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 7.7e-136 487.6 276 85.1
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 2.6e-131 472.6 326 68.1
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 1.4e-124 450.3 345 65.8
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.2e-122 443.0 256 81.2
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 8.2e-122 441.0 254 81.1
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 1.9e-118 429.9 339 61.4
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 2.1e-117 426.4 383 60.1
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 1.4e-113 413.7 232 82.3
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.4e-113 413.7 311 66.6
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 2.4e-113 412.9 311 66.6
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 5.0e-111 405.2 228 84.6
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 6.8e-108 394.8 345 55.7
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 8.6e-103 377.9 245 72.7
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.1e-101 373.2 315 61.0
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.7e-98 362.5 345 57.1
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.2e-96 357.5 339 52.8
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 7.8e-96 354.8 342 52.9
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 9.5e-94 347.8 254 69.3
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 2.0e-88 330.1 189 84.7
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 5.2e-84 315.5 190 80.0
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 1.5e-75 287.3 174 77.6
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 1.3e-74 284.3 218 67.0
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 6.9e-60 235.3 157 72.0
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 7.9e-56 221.9 134 79.1
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 4.2e-49 199.5 347 36.9
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.2e-48 198.0 114 78.9
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 1.0e-47 194.9 114 76.3
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.1e-41 174.9 248 45.6
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 3.2e-41 173.3 94 86.2
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 6.0e-40 169.1 99 79.8
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 4.3e-38 162.9 357 34.7
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 6.1e-24 115.9 81 75.3
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 2.3e-23 114.0 255 34.1
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.5e-22 111.3 95 57.9
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.8e-20 104.4 169 42.0
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 3.2e-17 93.6 85 56.5
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 1.8e-12 77.8 45 80.0
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.5e-09 68.2 42 69.0


User provided reference genes

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