Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 8.3e-192 673.7 349 100.0
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.2e-119 432.6 372 66.7
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 4.4e-116 422.2 362 66.0
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.7e-115 420.2 337 67.7
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 9.1e-114 414.5 350 66.6
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 2.7e-113 412.9 356 65.4
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 4.5e-113 412.1 372 65.3
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 5.9e-113 411.8 368 64.1
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 5.9e-113 411.8 369 61.8
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 2.5e-111 406.4 363 63.1
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 3.2e-111 406.0 353 63.5
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.2e-110 404.1 369 62.1
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 1.6e-110 403.7 355 65.1
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 5.2e-109 398.7 356 64.3
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 7.5e-108 394.8 365 62.2
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 6.3e-107 391.7 353 61.2
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 8.3e-107 391.3 362 61.9
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 9.1e-106 387.9 379 59.6
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 1.6e-105 387.1 358 62.6
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 1.6e-105 387.1 344 64.5
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 2.0e-105 386.7 363 62.0
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 2.0e-105 386.7 355 63.1
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 4.5e-105 385.6 348 62.6
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 4.5e-105 385.6 357 62.5
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 5.9e-105 385.2 379 59.4
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 7.7e-105 384.8 313 66.5
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 7.7e-105 384.8 313 66.5
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.7e-104 383.6 314 66.6
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 2.2e-104 383.3 359 58.8
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 3.8e-104 382.5 334 63.2
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 8.5e-104 381.3 347 62.8
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.9e-103 380.2 363 61.2
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 1.9e-103 380.2 311 65.6
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 2.5e-103 379.8 272 71.3
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 3.2e-103 379.4 319 65.8
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 3.2e-103 379.4 356 61.0
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 3.2e-103 379.4 349 60.7
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 4.2e-103 379.0 247 78.5
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 4.2e-103 379.0 349 62.2
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 2.1e-102 376.7 352 60.5
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 2.1e-102 376.7 302 65.6
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 2.7e-102 376.3 279 69.2
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.6e-102 375.9 247 77.7
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 4.7e-102 375.6 248 75.8
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 4.7e-102 375.6 248 77.0
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 6.1e-102 375.2 377 57.3
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 8.0e-102 374.8 255 72.9
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.0e-101 374.4 363 59.0
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.3e-101 373.2 314 65.0
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 2.3e-101 373.2 386 55.4
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.3e-101 373.2 347 60.8
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 3.0e-101 372.9 246 75.2
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 4.0e-101 372.5 246 75.2
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 4.0e-101 372.5 337 60.8
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 5.2e-101 372.1 233 77.3
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 6.8e-101 371.7 355 59.7
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 6.8e-101 371.7 356 59.6
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 8.8e-101 371.3 352 59.4
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 1.2e-100 370.9 353 58.6
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 1.2e-100 370.9 353 58.6
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.5e-100 370.5 233 76.4
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 1.5e-100 370.5 247 74.5
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 2.0e-100 370.2 233 76.8
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 2.0e-100 370.2 248 75.0
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 2.0e-100 370.2 387 56.6
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 3.4e-100 369.4 333 60.7
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 3.4e-100 369.4 301 64.8
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.4e-100 369.4 224 81.2
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 5.7e-100 368.6 233 76.8
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 5.7e-100 368.6 333 60.7
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 5.7e-100 368.6 247 74.5
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 7.5e-100 368.2 247 74.5
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 9.8e-100 367.9 281 68.7
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 9.8e-100 367.9 281 68.7
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 1.3e-99 367.5 364 58.8
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.7e-99 367.1 386 54.9
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 1.7e-99 367.1 275 70.2
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 2.8e-99 366.3 354 58.8
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 3.7e-99 365.9 352 58.5
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 4.9e-99 365.5 351 58.7
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 6.3e-99 365.2 351 59.3
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.4e-98 364.0 374 57.8
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 1.4e-98 364.0 313 62.6
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.4e-98 363.2 263 71.1
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 2.4e-98 363.2 348 58.3
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 2.4e-98 363.2 348 58.3
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 3.1e-98 362.8 255 71.8
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 5.4e-98 362.1 263 70.3
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 1.6e-97 360.5 357 59.1
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.6e-97 360.5 357 57.7
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 1.3e-96 357.5 271 67.9
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 1.3e-96 357.5 375 56.8
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 2.3e-96 356.7 380 57.6
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 2.3e-96 356.7 356 57.9
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 5.0e-96 355.5 278 65.5
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.5e-95 354.0 360 57.2
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 2.5e-95 353.2 214 80.4
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 4.3e-95 352.4 361 57.6
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 1.2e-94 350.9 229 73.8
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 4.7e-94 349.0 350 54.9
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 6.1e-94 348.6 278 64.4
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 1.4e-93 347.4 242 71.9
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 1.8e-93 347.1 333 58.9
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 3.7e-91 339.3 225 73.8
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 1.1e-90 337.8 212 76.9
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 1.1e-87 327.8 189 84.1
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 1.9e-87 327.0 335 55.5
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 4.4e-84 315.8 239 65.7
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 1.9e-82 310.5 178 85.4
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.4e-82 310.1 224 68.3
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 4.1e-82 309.3 217 69.1
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 4.6e-81 305.8 177 84.7
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 6.6e-80 302.0 224 66.1
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.2e-78 297.7 178 83.1
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 3.6e-78 296.2 353 51.6
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 4.4e-76 289.3 211 71.1
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.4e-74 282.3 238 58.8
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 7.1e-74 282.0 239 58.6
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 2.7e-73 280.0 355 51.5
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 6.0e-73 278.9 223 61.9
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 3.9e-72 276.2 192 72.9
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 7.3e-71 271.9 289 56.4
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 9.2e-66 255.0 163 77.9
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 4.7e-62 242.7 147 78.2
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 1.9e-58 230.7 146 77.4
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.6e-57 226.1 130 83.1
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 6.2e-54 215.7 369 40.7
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 3.4e-52 209.9 127 78.0
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.2e-50 203.4 213 47.4
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 9.3e-50 201.8 213 46.9
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 1.6e-46 191.0 349 40.1
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 2.9e-43 180.3 101 83.2
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 3.8e-43 179.9 101 83.2
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 3.8e-43 179.9 101 84.2
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 1.1e-42 178.3 258 42.2
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 1.4e-42 177.9 101 82.2
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 3.2e-42 176.8 101 82.2
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 3.2e-42 176.8 101 82.2
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 1.2e-41 174.9 101 81.2
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 1.2e-41 174.9 101 81.2
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 1.2e-41 174.9 347 37.8
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 1.6e-41 174.5 101 81.2
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 2.1e-41 174.1 101 81.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 2.1e-41 174.1 101 81.2
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 4.6e-41 172.9 218 45.4
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.0e-36 157.5 163 56.4
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 8.4e-35 152.1 215 48.8
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 2.5e-34 150.6 251 35.9
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 3.2e-34 150.2 91 81.3
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 8.7e-32 142.1 206 48.5
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 3.7e-30 136.7 101 67.3
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.6e-28 130.6 115 60.9
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 3.4e-28 130.2 73 86.3
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 3.4e-28 130.2 73 86.3
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 3.4e-28 130.2 73 86.3
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 2.2e-27 127.5 246 40.2
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.5e-26 124.0 234 40.6
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 2.1e-25 120.9 228 39.0
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 2.8e-22 110.5 78 66.7
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 3.1e-21 107.1 85 57.6
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 6.9e-21 105.9 63 79.4
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 1.4e-18 98.2 54 85.2
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 2.5e-18 97.4 155 34.2
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 2.5e-18 97.4 56 80.4
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 5.7e-15 86.3 58 75.9
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 4.8e-14 83.2 49 79.6
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 1.1e-13 82.0 44 88.6
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 2.6e-12 77.4 68 60.3


User provided reference genes

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