Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 6.5e-67 257.3 134 100.0
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 1.2e-33 146.7 140 61.4
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 6.2e-33 144.4 137 62.8
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 4.0e-32 141.7 136 63.2
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.0e-31 139.4 136 55.9
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 8.3e-30 134.0 135 55.6
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 5.4e-29 131.3 139 58.3
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 2.0e-28 129.4 138 57.2
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 2.0e-28 129.4 134 54.5
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 4.6e-28 128.3 135 59.3
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 4.6e-28 128.3 137 53.3
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 4.6e-28 128.3 137 53.3
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 4.6e-28 128.3 131 52.7
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 1.0e-27 127.1 131 57.3
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 5.0e-27 124.8 134 56.0
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 1.1e-26 123.6 143 58.0
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 7.3e-26 120.9 130 58.5
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 7.3e-26 120.9 134 56.0
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 7.3e-26 120.9 146 53.4
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 2.1e-25 119.4 142 57.0
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 2.8e-25 119.0 134 55.2
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.4e-24 116.7 135 52.6
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.8e-24 116.3 129 51.2
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 1.8e-24 116.3 146 48.6
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 3.1e-24 115.5 135 48.9
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 4.0e-24 115.2 145 52.4
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 5.2e-24 114.8 140 53.6
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 5.2e-24 114.8 137 53.3
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 6.8e-24 114.4 128 53.9
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 2.0e-23 112.8 144 52.1
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 5.8e-23 111.3 137 52.6
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 1.7e-22 109.8 138 52.2
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 2.2e-22 109.4 134 49.3
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 4.9e-22 108.2 129 55.8
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 8.3e-22 107.5 135 48.1
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 1.4e-21 106.7 149 49.7
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 1.9e-21 106.3 136 50.0
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 3.2e-21 105.5 122 55.7
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 7.1e-21 104.4 135 50.4
Gohir.D05G140350 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.6e-20 103.2 129 45.7
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 2.1e-20 102.8 133 48.9
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 3.5e-20 102.1 134 45.5
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 3.5e-20 102.1 126 49.2
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 4.6e-20 101.7 128 50.8
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 1.0e-19 100.5 135 47.4
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 1.3e-19 100.1 145 49.0
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 3.0e-19 99.0 134 44.8
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 3.9e-19 98.6 138 42.0
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 6.6e-19 97.8 122 54.1
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 8.6e-19 97.4 135 48.1
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 1.5e-18 96.7 135 45.9
vmacro15066 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 1.5e-18 96.7 131 49.6
Aqoxy7G00990 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 1.9e-18 96.3 135 47.4
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 1.9e-18 96.3 88 61.4
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 2.5e-18 95.9 147 46.9
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 3.3e-18 95.5 153 45.1
ClCG09G001220 Citrullus lanatus HOM05D002144 ORTHO05D002170 5.6e-18 94.7 115 46.1
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 5.6e-18 94.7 121 45.5
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 5.6e-18 94.7 147 46.9
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 7.3e-18 94.4 145 47.6
HanXRQChr04g0094481 Helianthus annuus HOM05D002144 ORTHO05D002170 7.3e-18 94.4 134 41.8
MBI13_g01666_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 7.3e-18 94.4 134 50.7
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 7.3e-18 94.4 143 44.1
PSO386G0143 Papaver somniferum HOM05D002144 ORTHO05D002170 9.5e-18 94.0 136 42.6
PSO386G0162 Papaver somniferum HOM05D002144 ORTHO05D002170 1.2e-17 93.6 136 44.9
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 1.6e-17 93.2 152 46.7
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 1.6e-17 93.2 136 47.1
MSTRG.9537 Avicennia marina HOM05D002144 ORTHO05D002170 2.1e-17 92.8 147 47.6
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 2.1e-17 92.8 138 44.2
BcaB02g10863 Brassica carinata HOM05D002144 ORTHO05D002170 3.6e-17 92.0 136 44.1
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 3.6e-17 92.0 114 52.6
PSO223G0023 Papaver somniferum HOM05D002144 ORTHO05D002170 4.7e-17 91.7 136 41.9
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 4.7e-17 91.7 143 42.0
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 6.2e-17 91.3 113 46.9
SalBow7G2197 Salvia bowleyana HOM05D002144 ORTHO05D002170 6.2e-17 91.3 132 50.8
MELO3C024325.2 Cucumis melo HOM05D002144 ORTHO05D002170 1.1e-16 90.5 109 46.8
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 1.4e-16 90.1 118 51.7
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 1.8e-16 89.7 123 53.7
Eucgr.J02610 Eucalyptus grandis HOM05D002144 ORTHO05D002170 2.3e-16 89.4 138 44.9
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 4.0e-16 88.6 125 48.0
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 5.2e-16 88.2 126 47.6
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 6.8e-16 87.8 138 46.4
DCAR_016099 Daucus carota HOM05D002144 ORTHO05D002170 8.9e-16 87.4 125 48.0
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.2e-15 87.0 120 50.0
Sed0008928 Sechium edule HOM05D002144 ORTHO05D002170 1.2e-15 87.0 112 45.5
CsaV3_7G034150 Cucumis sativus L. HOM05D002144 ORTHO05D002170 1.5e-15 86.7 117 45.3
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.6e-15 85.9 125 47.2
Aa31LG10G1360 Aethionema arabicum HOM05D000815 ORTHO05D000636 3.4e-15 85.5 134 42.5
THA.LOC104822669 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 3.4e-15 85.5 132 43.2
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 4.4e-15 85.1 83 56.6
ECA232G0343 Erigeron canadensis HOM05D003140 ORTHO05D003851 4.4e-15 85.1 138 44.2
Sed0018160 Sechium edule HOM05D002144 ORTHO05D002170 4.4e-15 85.1 107 49.5
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 5.8e-15 84.7 85 55.3
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 5.8e-15 84.7 121 52.1
MELO3C022686.2 Cucumis melo HOM05D002144 ORTHO05D002170 3.7e-14 82.0 147 38.8
Sp1g40510 Schrenkiella parvula HOM05D001069 ORTHO05D002170 3.7e-14 82.0 126 42.9
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 6.4e-14 81.3 113 51.3
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 1.9e-13 79.7 115 49.6
Os09g0437500 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 1.9e-13 79.7 162 42.0
A05p17730 Brassica napus HOM05D002144 ORTHO05D002170 3.2e-13 79.0 137 43.1
BraA05t20665Z Brassica rapa HOM05D002144 ORTHO05D002170 3.2e-13 79.0 137 43.1
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 3.2e-13 79.0 152 38.2
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 4.1e-13 78.6 134 41.8
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 5.4e-13 78.2 150 38.7
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 5.4e-13 78.2 150 38.7
BcaC08g44159 Brassica carinata HOM05D002144 ORTHO05D002170 7.1e-13 77.8 137 43.1
BolC6t36748H Brassica oleracea HOM05D002144 ORTHO05D002170 7.1e-13 77.8 137 43.1
ClCG07G014400 Citrullus lanatus HOM05D002144 ORTHO05D002170 1.2e-12 77.0 133 44.4
TPR.G16655 Trifolium pratense HOM05D002144 ORTHO05D002170 1.6e-12 76.6 128 43.8
C06p15600 Brassica napus HOM05D002144 ORTHO05D002170 2.1e-12 76.3 137 42.3
Migut.D00918 Erythranthe guttata HOM05D002144 ORTHO05D002170 6.0e-12 74.7 133 39.8
Nitab4.5_0003137g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 6.0e-12 74.7 150 42.7
CANSAT56G1652 Cannabis sativa HOM05D002144 ORTHO05D002170 1.3e-11 73.6 158 41.8
Nitab4.5_0002716g0090 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.7e-11 73.2 153 41.8
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 2.3e-11 72.8 110 48.2
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 1.1e-10 70.5 68 57.4
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 3.3e-10 68.9 42 71.4
A06p00580 Brassica napus HOM05D000815 ORTHO05D000636 5.6e-10 68.2 124 42.7
BraA06t23272Z Brassica rapa HOM05D000815 ORTHO05D000636 5.6e-10 68.2 124 42.7
C06p09860 Brassica napus HOM05D000815 ORTHO05D000636 3.6e-09 65.5 123 42.3
BolC6t36057H Brassica oleracea HOM05D000815 ORTHO05D000636 3.6e-09 65.5 123 42.3
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 3.6e-09 65.5 61 50.8
Zm00001eb313950 Zea mays HOM05D002144 ORTHO05D002170 4.7e-09 65.1 68 52.9
Pp3c20_21690 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.1e-08 63.9 163 32.5
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 2.4e-08 62.8 142 36.6
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 4.0e-08 62.0 138 32.6
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 4.0e-08 62.0 149 31.5
Sc16g0008780 Simmondsia chinensis HOM05D002144 ORTHO05D002170 5.2e-08 61.6 58 53.4
Pp3c10_24000 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.2e-07 60.5 171 32.2
CDE11G0597 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 1.5e-07 60.1 74 41.9
HanXRQChr11g0339851 Helianthus annuus HOM05D002144 ORTHO05D002170 2.0e-07 59.7 74 43.2
MELO3C015306.2 Cucumis melo HOM05D002144 ORTHO05D002170 3.4e-07 58.9 36 69.4
Sc09g0002900 Simmondsia chinensis HOM05D002144 ORTHO05D002170 4.4e-07 58.5 36 66.7
TAR365G0709 Trochodendron aralioides HOM05D002144 ORTHO05D002170 4.4e-07 58.5 129 34.9
ClCG03G017140 Citrullus lanatus HOM05D002144 ORTHO05D002170 5.8e-07 58.2 36 66.7
Sp3g12440 Schrenkiella parvula HOM05D002144 ORTHO05D002170 5.8e-07 58.2 134 33.6
Aa31LG8G1430 Aethionema arabicum HOM05D002144 ORTHO05D002170 7.6e-07 57.8 86 44.2
CDE05G2734 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 7.6e-07 57.8 74 41.9
Lj1g0021138 Lotus japonicus HOM05D002144 ORTHO05D002170 7.6e-07 57.8 132 34.1
Pp3c24_1050 Physcomitrium patens HOM05D003630 ORTHO05D004151 7.6e-07 57.8 163 33.1
AL3G26430 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 9.9e-07 57.4 29 82.8
Ciclev10002843m.g Citrus clementina HOM05D002144 ORTHO05D002170 9.9e-07 57.4 142 36.6
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.3e-06 57.0 91 39.6
Peaxi162Scf00037g01327 Petunia axillaris HOM05D002144 ORTHO05D002170 1.3e-06 57.0 123 37.4
Peaxi162Scf00471g00710 Petunia axillaris HOM05D002144 ORTHO05D002170 1.3e-06 57.0 126 37.3
Pp3c23_13750 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.3e-06 57.0 174 33.9
GSVIVG01031183001 Vitis vinifera HOM05D002144 ORTHO05D002170 1.3e-06 57.0 126 34.9
C01p50450 Brassica napus HOM05D002144 ORTHO05D002170 1.7e-06 56.6 95 37.9
BolC1t04997H Brassica oleracea HOM05D002144 ORTHO05D002170 1.7e-06 56.6 95 37.9
CsaV3_1G038820 Cucumis sativus L. HOM05D002144 ORTHO05D002170 1.7e-06 56.6 36 66.7
CsaV3_2G006690 Cucumis sativus L. HOM05D002144 ORTHO05D002170 1.7e-06 56.6 91 39.6
Lsat_1_v5_gn_1_37700 Lactuca sativa HOM05D002144 ORTHO05D002170 1.7e-06 56.6 91 40.7
MD04G1198800 Malus domestica HOM05D002144 ORTHO05D002170 1.7e-06 56.6 49 53.1
Solyc01g099840.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 1.7e-06 56.6 127 36.2
Sopen00g009360 Solanum pennellii HOM05D002144 ORTHO05D002170 1.7e-06 56.6 127 36.2
Sopen01g043350 Solanum pennellii HOM05D002144 ORTHO05D002170 1.7e-06 56.6 127 36.2
CAN.G1459.22 Capsicum annuum HOM05D002144 ORTHO05D002170 2.2e-06 56.2 127 36.2
CARHR089060 Cardamine hirsuta HOM05D002144 ORTHO05D002170 2.2e-06 56.2 25 92.0
DCAR_003365 Daucus carota HOM05D002144 ORTHO05D002170 2.2e-06 56.2 116 37.9
PGR031G3340 Punica granatum HOM05D002144 ORTHO05D002170 2.2e-06 56.2 125 35.2
Duzib106G0149 Durio zibethinus HOM05D002144 ORTHO05D002170 2.9e-06 55.8 136 33.1
AUR62000749 Chenopodium quinoa HOM05D002144 ORTHO05D002170 3.8e-06 55.5 30 73.3
AUR62000750 Chenopodium quinoa HOM05D002144 ORTHO05D002170 3.8e-06 55.5 30 73.3
Migut.N02089 Erythranthe guttata HOM05D002144 ORTHO05D002170 3.8e-06 55.5 31 74.2
Eucgr.H04545 Eucalyptus grandis HOM05D002144 ORTHO05D002170 3.8e-06 55.5 82 39.0
PSO724G0168 Papaver somniferum HOM05D002144 ORTHO05D002170 3.8e-06 55.5 132 34.8
QL03p019949 Quercus lobata HOM05D002144 ORTHO05D002170 3.8e-06 55.5 132 32.6
Medtr7g112860 Medicago truncatula HOM05D002144 ORTHO05D002170 4.9e-06 55.1 121 33.9
Hund21717 Selenicereus undatus HOM05D002144 ORTHO05D002170 4.9e-06 55.1 49 53.1
PGSC0003DMG400024720 Solanum tuberosum HOM05D002144 ORTHO05D002170 4.9e-06 55.1 127 35.4
Thecc.05G314100 Theobroma cacao HOM05D002144 ORTHO05D002170 4.9e-06 55.1 137 32.1
Ah.04g161190 Amaranthus hybridus HOM05D002144 ORTHO05D002170 6.4e-06 54.7 96 35.4
BraA05t22338Z Brassica rapa HOM05D002144 ORTHO05D002170 6.4e-06 54.7 95 37.9
CSS0005363 Camellia sinensis var. sinensis HOM05D002144 ORTHO05D002170 6.4e-06 54.7 130 34.6
MELO3C004219.2 Cucumis melo HOM05D002144 ORTHO05D002170 6.4e-06 54.7 91 38.5
Os03g0342900 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 6.4e-06 54.7 125 38.4
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 6.4e-06 54.7 140 30.0
Aqoxy5G00761 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 8.4e-06 54.3 72 37.5
Cfa006639 Carpinus fangiana HOM05D002144 ORTHO05D002170 8.4e-06 54.3 127 36.2
COL.COLO4_10536 Corchorus olitorius HOM05D002144 ORTHO05D002170 8.4e-06 54.3 126 33.3
Haze_04128 Corylus avellana HOM05D002144 ORTHO05D002170 8.4e-06 54.3 141 33.3
HanXRQChr03g0074691 Helianthus annuus HOM05D002144 ORTHO05D002170 8.4e-06 54.3 120 34.2
Nitab4.5_0003113g0120 Nicotiana tabacum HOM05D002144 ORTHO05D002170 8.4e-06 54.3 125 38.4
SalBow7G0387 Salvia bowleyana HOM05D002144 ORTHO05D002170 8.4e-06 54.3 67 43.3
unitig_0.g2318 Utricularia gibba HOM05D002144 ORTHO05D002170 8.4e-06 54.3 132 33.3


User provided reference genes

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