Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR111G0120 Punica granatum HOM05D008285 ORTHO05D010431 1.5e-23 112.1 58 100.0
Nn031s41612 Nelumbo nucifera HOM05D008285 ORTHO05D010431 6.2e-22 106.7 58 93.1
Nn064s42214 Nelumbo nucifera HOM05D008285 ORTHO05D010431 6.2e-22 106.7 58 93.1
Nn8g41105 Nelumbo nucifera HOM05D008285 ORTHO05D010431 2.3e-21 104.8 57 91.2
Nn212s45209 Nelumbo nucifera HOM05D008285 ORTHO05D010431 1.5e-20 102.1 59 91.5
Gohir.1Z049931 Gossypium hirsutum HOM05D008285 ORTHO05D010431 3.7e-19 97.4 52 94.2
Gohir.A02G134106 Gossypium hirsutum HOM05D008285 ORTHO05D010431 3.7e-19 97.4 52 94.2
Gorai.009G442800 Gossypium raimondii HOM05D008285 ORTHO05D010431 3.7e-19 97.4 52 94.2
Hma1.2p1_0859F.1_g229500 Hydrangea macrophylla HOM05D008285 ORTHO05D010431 8.3e-19 96.3 52 94.2
Gohir.A01G140110 Gossypium hirsutum HOM05D008285 ORTHO05D010431 1.4e-18 95.5 52 92.3
Gohir.1Z049481 Gossypium hirsutum HOM05D008285 ORTHO05D010431 1.9e-18 95.1 52 92.3
Nn1g08636 Nelumbo nucifera HOM05D008285 ORTHO05D010431 3.2e-18 94.4 58 82.8
CSS0043912 Camellia sinensis var. sinensis HOM05D008285 ORTHO05D010431 4.1e-18 94.0 52 92.3
Gohir.A12G229600 Gossypium hirsutum HOM05D008285 ORTHO05D010431 9.2e-18 92.8 52 88.5
PSO548G0110 Papaver somniferum HOM05D008285 ORTHO05D010431 9.2e-18 92.8 58 84.5
Manes.18G138300 Manihot esculenta HOM05D008285 ORTHO05D010431 2.7e-17 91.3 53 86.8
SalBow1G4672 Salvia bowleyana HOM05D008285 ORTHO05D010431 1.0e-16 89.4 52 86.5
SalBow1G6462 Salvia bowleyana HOM05D008285 ORTHO05D010431 1.0e-16 89.4 52 86.5
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.7e-16 88.6 50 88.0
PGSC0003DMG400000878 Solanum tuberosum HOM05D008285 ORTHO05D010431 1.7e-16 88.6 50 90.0
DCAR_032534 Daucus carota HOM05D008285 ORTHO05D010431 3.0e-16 87.8 55 83.6
ATCG01020 Arabidopsis thaliana HOM05D008285 ORTHO05D010431 6.6e-16 86.7 50 86.0
C09p40390 Brassica napus HOM05D008285 ORTHO05D010431 6.6e-16 86.7 50 86.0
BolSC29t60502H Brassica oleracea HOM05D008285 ORTHO05D010431 6.6e-16 86.7 50 86.0
BolSC35t60700H Brassica oleracea HOM05D008285 ORTHO05D010431 6.6e-16 86.7 50 86.0
BolSC44t60819H Brassica oleracea HOM05D008285 ORTHO05D010431 6.6e-16 86.7 50 86.0
BraSC103t45425Z Brassica rapa HOM05D008285 ORTHO05D010431 6.6e-16 86.7 50 86.0
BraSC138t45538Z Brassica rapa HOM05D008285 ORTHO05D010431 6.6e-16 86.7 50 86.0
BraSC25t45906Z Brassica rapa HOM05D008285 ORTHO05D010431 6.6e-16 86.7 50 86.0
BraSC59t46547Z Brassica rapa HOM05D008285 ORTHO05D010431 6.6e-16 86.7 50 86.0
HanXRQCPg0580381 Helianthus annuus HOM05D008285 ORTHO05D010431 1.1e-15 85.9 52 86.5
RcHm_v2.0_CPg0502841 Rosa chinensis HOM05D008285 ORTHO05D010431 1.9e-15 85.1 47 91.5
BolC9t56809H Brassica oleracea HOM05D008285 ORTHO05D010431 4.3e-15 84.0 50 84.0
C02p28770 Brassica napus HOM05D008285 ORTHO05D010431 5.6e-15 83.6 50 82.0
BolC2t08924H Brassica oleracea HOM05D008285 ORTHO05D010431 5.6e-15 83.6 50 82.0
CARHR282410 Cardamine hirsuta HOM05D008285 ORTHO05D010431 5.6e-15 83.6 50 86.0
BolC9t56929H Brassica oleracea HOM05D008285 ORTHO05D010431 7.3e-15 83.2 50 82.0
RcHm_v2.0_Chr4g0421191 Rosa chinensis HOM05D008285 ORTHO05D010431 9.5e-15 82.8 47 89.4
PSO063G2603 Papaver somniferum HOM05D008285 ORTHO05D010431 2.1e-14 81.6 47 87.2
CAN.G1045.12 Capsicum annuum HOM05D008285 ORTHO05D010431 4.7e-14 80.5 47 85.1
CAN.G1045.15 Capsicum annuum HOM05D008285 ORTHO05D010431 4.7e-14 80.5 47 85.1
CAN.G222.14 Capsicum annuum HOM05D008285 ORTHO05D010431 4.7e-14 80.5 47 85.1
CAN.G413.8 Capsicum annuum HOM05D008285 ORTHO05D010431 4.7e-14 80.5 47 85.1
CAN.G657.10 Capsicum annuum HOM05D008285 ORTHO05D010431 4.7e-14 80.5 47 85.1
PSO339G5238 Papaver somniferum HOM05D008285 ORTHO05D010431 4.7e-14 80.5 47 85.1
CAN.G1431.2 Capsicum annuum HOM05D008285 ORTHO05D010431 1.4e-13 79.0 47 83.0
CAN.G965.8 Capsicum annuum HOM05D008285 ORTHO05D010431 2.3e-13 78.2 47 83.0
Solyc03g013610.1 Solanum lycopersicum HOM05D008285 ORTHO05D010431 4.0e-13 77.4 50 82.0
BolC2t10592H Brassica oleracea HOM05D008285 ORTHO05D010431 5.2e-13 77.0 46 82.6
CAN.G8.24 Capsicum annuum HOM05D008285 ORTHO05D010431 6.8e-13 76.6 47 80.9
CAN.G1324.6 Capsicum annuum HOM05D008285 ORTHO05D010431 1.2e-12 75.9 47 80.9
CAN.G213.15 Capsicum annuum HOM05D008285 ORTHO05D010431 3.4e-12 74.3 47 78.7
Nitab4.5_0015353g0010 Nicotiana tabacum HOM05D008285 ORTHO05D010431 3.4e-12 74.3 45 86.7
Lalb_Chr07g0191721 Lupinus albus HOM05D008285 ORTHO05D010431 4.4e-12 73.9 49 77.6
SGA_v2.0_scaffold36G14477 Striga asiatica HOM05D008285 ORTHO05D010431 7.5e-12 73.2 46 82.6
Medtr4g006140 Medicago truncatula HOM05D008285 ORTHO05D010431 1.3e-11 72.4 44 81.8
Aqoxy1G03262 Aquilegia oxysepala HOM05D008285 ORTHO05D010431 1.7e-11 72.0 47 80.9
CAN.G262.5 Capsicum annuum HOM05D008285 ORTHO05D010431 2.9e-11 71.2 51 76.5
BolSC45t60913H Brassica oleracea HOM05D008285 ORTHO05D010431 3.7e-11 70.9 49 79.6
Psat5g142800 Pisum sativum HOM05D008285 ORTHO05D010431 3.7e-11 70.9 46 78.3
Potri.009G163200 Populus trichocarpa HOM05D008285 ORTHO05D010431 1.1e-10 69.3 53 67.9
Glyma.18G193100 Glycine max HOM05D008285 ORTHO05D010431 1.1e-07 59.3 57 57.9
SMO230G0005 Selaginella moellendorffii HOM05D008285 ORTHO05D010431 6.2e-06 53.5 47 61.7


User provided reference genes

Program Settings