Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2384 Punica granatum HOM05D000005 ORTHO05D336936 5.4e-113 411.0 205 100.0
PGR102G0684 Punica granatum HOM05D000005 ORTHO05D007072 2.3e-87 325.9 203 81.8
PGR102G0126 Punica granatum HOM05D000005 ORTHO05D007072 1.4e-76 290.0 193 78.2
Eucgr.F02533 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.1e-12 77.8 197 31.5
Phvul.010G054200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 1.1e-12 77.8 201 27.9
QL05p078760 Quercus lobata HOM05D000005 ORTHO05D000012 7.0e-12 75.1 196 27.0
Eucgr.E01998 Eucalyptus grandis HOM05D000005 ORTHO05D011459 9.2e-12 74.7 197 26.9
THA.LOC104811218 Tarenaya hassleriana HOM05D000005 ORTHO05D000012 1.2e-11 74.3 198 28.3
QL03p063768 Quercus lobata HOM05D000005 ORTHO05D000012 5.9e-11 72.0 196 27.6
QL10p023221 Quercus lobata HOM05D000005 ORTHO05D000012 7.8e-11 71.6 196 26.5
Eucgr.K01937 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.0e-10 71.2 190 28.9
QL03p063741 Quercus lobata HOM05D000005 ORTHO05D000012 1.0e-10 71.2 196 28.1
Eucgr.D01599 Eucalyptus grandis HOM05D000005 ORTHO05D011459 1.3e-10 70.9 196 25.5
QL09p005202 Quercus lobata HOM05D000005 ORTHO05D000012 1.7e-10 70.5 210 27.1
Eucgr.F03896 Eucalyptus grandis HOM05D000005 ORTHO05D011898 2.3e-10 70.1 195 28.2
Phvul.010G061333 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 2.9e-10 69.7 201 26.4
QL10p023232 Quercus lobata HOM05D000005 ORTHO05D000012 2.9e-10 69.7 196 26.5
QL09p005364 Quercus lobata HOM05D000005 ORTHO05D000012 3.8e-10 69.3 195 26.2
RcHm_v2.0_Chr4g0413891 Rosa chinensis HOM05D000005 ORTHO05D000012 6.6e-10 68.6 197 28.4
Medtr7g078780 Medicago truncatula HOM05D000005 ORTHO05D000012 8.6e-10 68.2 221 29.4
Potri.013G037599 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.1e-09 67.8 199 26.1
Potri.012G135700 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.5e-09 67.4 199 28.1
Phvul.010G054400 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 1.9e-09 67.0 201 25.4
Phvul.010G055200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 1.9e-09 67.0 201 25.4
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 2.5e-09 66.6 198 28.3
Eucgr.F03914 Eucalyptus grandis HOM05D000005 ORTHO05D011898 2.5e-09 66.6 194 27.8
Eucgr.E01983 Eucalyptus grandis HOM05D000005 ORTHO05D011459 4.3e-09 65.9 196 28.6
Phvul.010G054600 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 4.3e-09 65.9 171 25.7
arahy.Tifrunner.gnm1.ann1.39T2MF Arachis hypogaea HOM05D000005 ORTHO05D000012 5.6e-09 65.5 194 27.8
VMungo0647G2502 Vigna mungo HOM05D000005 ORTHO05D000012 5.6e-09 65.5 199 29.1
GSVIVG01036354001 Vitis vinifera HOM05D000005 ORTHO05D000012 5.6e-09 65.5 199 27.6
arahy.Tifrunner.gnm1.ann1.BC3717 Arachis hypogaea HOM05D000005 ORTHO05D000012 7.3e-09 65.1 194 28.9
Lj5g0014298 Lotus japonicus HOM05D000005 ORTHO05D000012 9.5e-09 64.7 215 26.0
Medtr3g006280 Medicago truncatula HOM05D000005 ORTHO05D000012 9.5e-09 64.7 192 24.5
Medtr6g078930 Medicago truncatula HOM05D000005 ORTHO05D000012 9.5e-09 64.7 197 26.4
arahy.Tifrunner.gnm1.ann1.IZ5HKP Arachis hypogaea HOM05D000005 ORTHO05D000012 1.2e-08 64.3 194 27.8
Prupe.4G227000 Prunus persica HOM05D000005 ORTHO05D000012 1.6e-08 63.9 208 25.0
CARHR201190 Cardamine hirsuta HOM05D000005 ORTHO05D000012 2.1e-08 63.5 189 25.4
PGR044G0279 Punica granatum HOM05D000005 ORTHO05D000012 2.1e-08 63.5 139 30.9
arahy.Tifrunner.gnm1.ann1.ABX7CL Arachis hypogaea HOM05D000005 ORTHO05D000012 2.8e-08 63.2 194 27.3
CiPaw.14G132300 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.8e-08 63.2 208 26.0
Eucgr.E01990 Eucalyptus grandis HOM05D000005 ORTHO05D011459 3.6e-08 62.8 194 26.3
Eucgr.K00847 Eucalyptus grandis HOM05D000005 ORTHO05D035191 3.6e-08 62.8 149 28.9
PGR044G1419 Punica granatum HOM05D000005 ORTHO05D000012 3.6e-08 62.8 139 30.9
Solyc05g006620.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 3.6e-08 62.8 194 24.7
arahy.Tifrunner.gnm1.ann1.QZS0X1 Arachis hypogaea HOM05D000005 ORTHO05D000012 4.7e-08 62.4 195 26.2
CiPaw.15G176000 Carya illinoinensis HOM05D000005 ORTHO05D000012 4.7e-08 62.4 199 26.1
Eucgr.L00809 Eucalyptus grandis HOM05D000005 ORTHO05D000012 4.7e-08 62.4 198 27.3
Nn8g41114 Nelumbo nucifera HOM05D000005 ORTHO05D000012 4.7e-08 62.4 202 26.7
VMungo0647G0480 Vigna mungo HOM05D000005 ORTHO05D000012 4.7e-08 62.4 213 27.2
CsaV3_2G008390 Cucumis sativus L. HOM05D000005 ORTHO05D000012 6.1e-08 62.0 203 29.6
Eucgr.L02373 Eucalyptus grandis HOM05D000005 ORTHO05D000012 6.1e-08 62.0 205 25.4
Prupe.2G059000 Prunus persica HOM05D000005 ORTHO05D000012 6.1e-08 62.0 210 27.1
RcHm_v2.0_Chr4g0413991 Rosa chinensis HOM05D000005 ORTHO05D000012 6.1e-08 62.0 196 28.6
CiPaw.14G131800 Carya illinoinensis HOM05D000005 ORTHO05D000012 8.0e-08 61.6 203 25.6
Lj2g0014428 Lotus japonicus HOM05D000005 ORTHO05D000012 8.0e-08 61.6 198 27.8
arahy.Tifrunner.gnm1.ann1.F5ZG0R Arachis hypogaea HOM05D000005 ORTHO05D000012 1.0e-07 61.2 194 28.4
arahy.Tifrunner.gnm1.ann1.IB6E9K Arachis hypogaea HOM05D000005 ORTHO05D000012 1.0e-07 61.2 187 27.3
C02p05480 Brassica napus HOM05D000005 ORTHO05D000012 1.0e-07 61.2 202 23.3
CiPaw.14G132900 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.0e-07 61.2 210 26.2
ECA028G0001 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.0e-07 61.2 202 23.3
ECA234G1385 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.0e-07 61.2 202 23.3
Eucgr.H02058 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.0e-07 61.2 219 25.6
Eucgr.L01050 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.0e-07 61.2 194 25.8
Gohir.D02G168100 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.0e-07 61.2 192 27.1
Medtr4g023260 Medicago truncatula HOM05D000005 ORTHO05D011497 1.0e-07 61.2 198 24.7
QL03p005070 Quercus lobata HOM05D000005 ORTHO05D000012 1.0e-07 61.2 196 26.0
GSVIVG01026003001 Vitis vinifera HOM05D000005 ORTHO05D000012 1.0e-07 61.2 198 27.8
arahy.Tifrunner.gnm1.ann1.F923VL Arachis hypogaea HOM05D000005 ORTHO05D000012 1.4e-07 60.8 195 25.1
arahy.Tifrunner.gnm1.ann1.QMVD72 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.4e-07 60.8 195 25.1
Lj2g0013802 Lotus japonicus HOM05D000005 ORTHO05D000012 1.4e-07 60.8 194 27.3
Lj2g0022160 Lotus japonicus HOM05D000005 ORTHO05D000012 1.4e-07 60.8 197 26.4
ATR1152G003 Amborella trichopoda HOM05D000005 ORTHO05D000012 1.8e-07 60.5 192 25.5
arahy.Tifrunner.gnm1.ann1.1C185Z Arachis hypogaea HOM05D000005 ORTHO05D000012 1.8e-07 60.5 148 28.4
C03p42410 Brassica napus HOM05D000005 ORTHO05D000449 1.8e-07 60.5 145 27.6
CiPaw.14G075500 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.8e-07 60.5 206 27.7
CiPaw.14G130900 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.8e-07 60.5 208 25.5
Duzib211G0632 Durio zibethinus HOM05D000005 ORTHO05D000012 1.8e-07 60.5 209 26.3
Eucgr.F03913 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.8e-07 60.5 185 26.5
FvH4_3g08681 Fragaria vesca HOM05D000005 ORTHO05D000012 1.8e-07 60.5 196 27.6
FAN11G1874 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.8e-07 60.5 196 27.6
arahy.Tifrunner.gnm1.ann1.27BWBV Arachis hypogaea HOM05D000005 ORTHO05D000012 2.3e-07 60.1 194 26.8
Medtr6g079120 Medicago truncatula HOM05D000005 ORTHO05D000012 2.3e-07 60.1 197 25.4
Prupe.8G046500 Prunus persica HOM05D000005 ORTHO05D000012 2.3e-07 60.1 198 29.3
QL03p067929 Quercus lobata HOM05D000005 ORTHO05D000012 2.3e-07 60.1 202 27.2
arahy.Tifrunner.gnm1.ann1.64ZMMV Arachis hypogaea HOM05D000005 ORTHO05D000012 3.0e-07 59.7 194 28.9
arahy.Tifrunner.gnm1.ann1.BW1AWE Arachis hypogaea HOM05D000005 ORTHO05D000012 3.0e-07 59.7 194 26.3
arahy.Tifrunner.gnm1.ann1.EG26MQ Arachis hypogaea HOM05D000005 ORTHO05D000012 3.0e-07 59.7 194 26.3
arahy.Tifrunner.gnm1.ann1.Y7I7Z8 Arachis hypogaea HOM05D000005 ORTHO05D000012 3.0e-07 59.7 194 26.3
CAN.G894.5 Capsicum annuum HOM05D000005 ORTHO05D000012 3.0e-07 59.7 202 24.3
QL05p019448 Quercus lobata HOM05D000005 ORTHO05D000012 3.0e-07 59.7 148 29.1
QL06p001491 Quercus lobata HOM05D000005 ORTHO05D000012 3.0e-07 59.7 214 25.2
QL09p047348 Quercus lobata HOM05D000005 ORTHO05D000012 3.0e-07 59.7 148 29.1
PGSC0003DMG400013543 Solanum tuberosum HOM05D000005 ORTHO05D000012 3.0e-07 59.7 213 23.0
VMungo1215G1062 Vigna mungo HOM05D000005 ORTHO05D000012 3.0e-07 59.7 194 25.3
Atru.chr5.3401 Acer truncatum HOM05D000005 ORTHO05D000012 4.0e-07 59.3 204 27.9
FvH4_7g32470 Fragaria vesca HOM05D000005 ORTHO05D000012 4.0e-07 59.3 199 30.7
Lj2g0014979 Lotus japonicus HOM05D000005 ORTHO05D000012 4.0e-07 59.3 205 27.3
Medtr3g058840 Medicago truncatula HOM05D000005 ORTHO05D000012 4.0e-07 59.3 197 22.3
Medtr6g079090 Medicago truncatula HOM05D000005 ORTHO05D000012 4.0e-07 59.3 194 24.2
arahy.Tifrunner.gnm1.ann1.5JS28N Arachis hypogaea HOM05D000005 ORTHO05D010991 5.2e-07 58.9 156 28.2
arahy.Tifrunner.gnm1.ann1.UAB7P3 Arachis hypogaea HOM05D000005 ORTHO05D010991 5.2e-07 58.9 156 28.2
Eucgr.H01446 Eucalyptus grandis HOM05D000005 ORTHO05D000012 5.2e-07 58.9 196 27.6
Nn8g40999 Nelumbo nucifera HOM05D000005 ORTHO05D000012 5.2e-07 58.9 206 26.2
QL10p005201 Quercus lobata HOM05D000005 ORTHO05D000012 5.2e-07 58.9 198 27.3
QL11p003594 Quercus lobata HOM05D000005 ORTHO05D000012 5.2e-07 58.9 190 26.3
arahy.Tifrunner.gnm1.ann1.7CH5H3 Arachis hypogaea HOM05D000005 ORTHO05D000012 6.8e-07 58.5 193 23.8
BraA02t05106Z Brassica rapa HOM05D000005 ORTHO05D000012 6.8e-07 58.5 198 23.7
CsaV3_2G004870 Cucumis sativus L. HOM05D000005 ORTHO05D000012 6.8e-07 58.5 187 27.3
Eucgr.C03961 Eucalyptus grandis HOM05D000005 ORTHO05D000012 6.8e-07 58.5 208 26.9
Glyma.20G048800 Glycine max HOM05D000005 ORTHO05D000012 6.8e-07 58.5 188 23.9
Lj3g0006845 Lotus japonicus HOM05D000005 ORTHO05D000012 6.8e-07 58.5 197 27.4
Lj3g0019436 Lotus japonicus HOM05D000005 ORTHO05D000012 6.8e-07 58.5 149 29.5
MD12G1248800 Malus domestica HOM05D000005 ORTHO05D000012 6.8e-07 58.5 195 28.2
BcaC03g16730 Brassica carinata HOM05D000005 ORTHO05D015813 8.9e-07 58.2 209 24.4
CiPaw.15G124400 Carya illinoinensis HOM05D000005 ORTHO05D000012 8.9e-07 58.2 205 24.9
Eucgr.H01841 Eucalyptus grandis HOM05D000005 ORTHO05D000012 8.9e-07 58.2 149 26.2
Gohir.A03G144800 Gossypium hirsutum HOM05D000005 ORTHO05D000012 8.9e-07 58.2 192 27.6
PGR044G2537 Punica granatum HOM05D000005 ORTHO05D000012 8.9e-07 58.2 195 24.6
QL10p004452 Quercus lobata HOM05D000005 ORTHO05D000012 8.9e-07 58.2 196 24.5
arahy.Tifrunner.gnm1.ann1.0C7DFX Arachis hypogaea HOM05D000005 ORTHO05D000012 1.2e-06 57.8 194 26.8
arahy.Tifrunner.gnm1.ann1.U5FUH1 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.2e-06 57.8 194 27.8
BolC3t16511H Brassica oleracea HOM05D000005 ORTHO05D000449 1.2e-06 57.8 145 26.2
Glyma.01G039000 Glycine max HOM05D000005 ORTHO05D000012 1.2e-06 57.8 199 24.6
Gorai.005G188600 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.2e-06 57.8 192 26.6
Lj3g0027971 Lotus japonicus HOM05D000005 ORTHO05D023717 1.2e-06 57.8 192 25.5
Potri.019G070393 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.2e-06 57.8 198 24.7
PGSC0003DMG400021887 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.2e-06 57.8 203 22.7
CSS0039985 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.5e-06 57.4 204 26.5
Eucgr.E03077 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.5e-06 57.4 200 25.0
Eucgr.E03097 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.5e-06 57.4 194 25.8
Lj3g0008516 Lotus japonicus HOM05D000005 ORTHO05D000012 1.5e-06 57.4 195 24.1
Lalb_Chr10g0101581 Lupinus albus HOM05D000005 ORTHO05D000012 1.5e-06 57.4 151 28.5
PGR031G3491 Punica granatum HOM05D000005 ORTHO05D000012 1.5e-06 57.4 197 26.9
arahy.Tifrunner.gnm1.ann1.7L0VU8 Arachis hypogaea HOM05D000005 ORTHO05D011497 2.0e-06 57.0 203 25.6
arahy.Tifrunner.gnm1.ann1.8Z3MAM Arachis hypogaea HOM05D000005 ORTHO05D010991 2.0e-06 57.0 148 29.1
arahy.Tifrunner.gnm1.ann1.KRT76W Arachis hypogaea HOM05D000011 ORTHO05D010991 2.0e-06 57.0 148 29.1
Eucgr.E03075 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.0e-06 57.0 185 28.1
Eucgr.K00852 Eucalyptus grandis HOM05D000005 ORTHO05D035191 2.0e-06 57.0 192 25.5
QL11p021399 Quercus lobata HOM05D000005 ORTHO05D000012 2.0e-06 57.0 197 25.4
FvH4_3g21280 Fragaria vesca HOM05D000005 ORTHO05D046210 2.6e-06 56.6 182 27.5
Glyma.16G136600 Glycine max HOM05D000005 ORTHO05D000012 2.6e-06 56.6 202 26.7
MD05G1317700 Malus domestica HOM05D000005 ORTHO05D000012 2.6e-06 56.6 197 25.9
arahy.Tifrunner.gnm1.ann1.YSFD3L Arachis hypogaea HOM05D000005 ORTHO05D000012 3.4e-06 56.2 197 27.4
Eucgr.E02219 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.4e-06 56.2 193 24.9
Eucgr.E03080 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.4e-06 56.2 196 25.0
FAN08G0595 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.4e-06 56.2 209 25.8
BcaB03g15024 Brassica carinata HOM05D000005 ORTHO05D010246 4.4e-06 55.8 190 25.3
A03p34820 Brassica napus HOM05D000005 ORTHO05D000449 4.4e-06 55.8 145 26.2
BraA03t12663Z Brassica rapa HOM05D000005 ORTHO05D000449 4.4e-06 55.8 145 26.2
Eucgr.D02396 Eucalyptus grandis HOM05D000005 ORTHO05D000012 4.4e-06 55.8 194 24.7
MD16G1140700 Malus domestica HOM05D000005 ORTHO05D000012 4.4e-06 55.8 196 24.5
Nn1g01979 Nelumbo nucifera HOM05D000005 ORTHO05D000012 4.4e-06 55.8 205 26.3
Prupe.2G083200 Prunus persica HOM05D000005 ORTHO05D000012 4.4e-06 55.8 141 31.2
PGR044G0008 Punica granatum HOM05D000005 ORTHO05D011898 4.4e-06 55.8 149 25.5
AT4G09430 Arabidopsis thaliana HOM05D000005 ORTHO05D010246 5.7e-06 55.5 190 25.8
BcaC07g41367 Brassica carinata HOM05D000005 ORTHO05D010246 5.7e-06 55.5 204 27.9
CiPaw.13G075200 Carya illinoinensis HOM05D000005 ORTHO05D000012 5.7e-06 55.5 196 29.6
CsaV3_2G005060 Cucumis sativus L. HOM05D000005 ORTHO05D000012 5.7e-06 55.5 202 29.2
Medtr6g088465 Medicago truncatula HOM05D000005 ORTHO05D000012 5.7e-06 55.5 196 24.0
Phvul.011G181366 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 5.7e-06 55.5 190 22.1
QL02p020383 Quercus lobata HOM05D000005 ORTHO05D000012 5.7e-06 55.5 203 25.1
QL93p2002_0022 Quercus lobata HOM05D000005 ORTHO05D000012 5.7e-06 55.5 190 25.3
arahy.Tifrunner.gnm1.ann1.8Q22UV Arachis hypogaea HOM05D000005 ORTHO05D000012 7.5e-06 55.1 197 25.4
CARHR024660 Cardamine hirsuta HOM05D000005 ORTHO05D000012 7.5e-06 55.1 153 28.1
CiPaw.15G176300 Carya illinoinensis HOM05D000005 ORTHO05D000012 7.5e-06 55.1 200 23.5
Eucgr.C02650 Eucalyptus grandis HOM05D000005 ORTHO05D007072 7.5e-06 55.1 205 27.8
Glyma.08G293600 Glycine max HOM05D000005 ORTHO05D000012 7.5e-06 55.1 195 25.1
Gohir.A10G231400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 7.5e-06 55.1 158 28.5
Medtr3g058740 Medicago truncatula HOM05D000005 ORTHO05D000012 7.5e-06 55.1 192 24.5
Phvul.011G195800 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 7.5e-06 55.1 190 22.6
Prupe.8G173700 Prunus persica HOM05D000005 ORTHO05D000012 7.5e-06 55.1 174 28.2
Prupe.8G237200 Prunus persica HOM05D000005 ORTHO05D000012 7.5e-06 55.1 168 28.6
RcHm_v2.0_Chr6g0250981 Rosa chinensis HOM05D000005 ORTHO05D000012 7.5e-06 55.1 147 27.2
AT1G17600 Arabidopsis thaliana HOM05D000005 ORTHO05D010246 9.8e-06 54.7 194 26.3
MELO3C004311.2 Cucumis melo HOM05D000005 ORTHO05D000012 9.8e-06 54.7 189 29.1
Gorai.005G188500 Gossypium raimondii HOM05D000005 ORTHO05D000012 9.8e-06 54.7 148 27.7
PGR142G4113 Punica granatum HOM05D000005 ORTHO05D000012 9.8e-06 54.7 199 25.6
QL09p005146 Quercus lobata HOM05D000005 ORTHO05D000012 9.8e-06 54.7 139 25.9
QL11p051381 Quercus lobata HOM05D000005 ORTHO05D000012 9.8e-06 54.7 198 27.3
PGSC0003DMG400022699 Solanum tuberosum HOM05D000005 ORTHO05D000012 9.8e-06 54.7 203 23.2


User provided reference genes

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