Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 1.9e-48 196.1 141 100.0
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 1.9e-48 196.1 141 100.0
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 4.8e-28 128.3 143 61.5
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 2.2e-25 119.4 147 70.7
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 6.5e-25 117.9 139 64.7
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.9e-24 116.3 131 68.7
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.2e-23 113.6 144 70.8
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 3.6e-23 112.1 132 68.9
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 3.6e-23 112.1 146 64.4
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 6.1e-23 111.3 131 51.1
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.3e-22 109.4 130 49.2
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 3.0e-22 109.0 146 52.1
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.5e-21 106.7 144 52.8
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 5.7e-21 104.8 134 59.7
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.3e-20 103.6 131 74.0
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.7e-20 103.2 115 53.0
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 2.2e-20 102.8 146 57.5
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 2.8e-20 102.4 143 50.3
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.8e-19 99.8 88 62.5
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 5.3e-19 98.2 88 58.0
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.9e-19 97.8 118 72.9
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.5e-18 96.7 121 50.4
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.6e-18 95.9 135 73.3
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 5.9e-18 94.7 126 47.6
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 5.9e-18 94.7 132 56.1
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 7.7e-18 94.4 150 56.7
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.3e-17 93.6 128 45.3
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 1.3e-17 93.6 123 50.4
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.3e-17 93.6 73 69.9
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.3e-17 93.6 121 48.8
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.7e-17 93.2 126 46.8
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.7e-17 93.2 143 50.3
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 2.2e-17 92.8 79 64.6
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.2e-17 92.8 129 45.0
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.8e-17 92.0 89 57.3
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 5.0e-17 91.7 138 71.7
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 5.0e-17 91.7 140 57.1
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 5.0e-17 91.7 123 48.8
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 5.0e-17 91.7 72 69.4
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 6.5e-17 91.3 123 59.3
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 8.5e-17 90.9 123 61.0
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 1.9e-16 89.7 134 50.0
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.9e-16 89.7 79 59.5
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 2.5e-16 89.4 124 55.6
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 4.2e-16 88.6 137 47.4
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 5.5e-16 88.2 145 53.8
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 5.5e-16 88.2 128 43.0
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 7.2e-16 87.8 127 43.3
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 9.4e-16 87.4 141 47.5
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 9.4e-16 87.4 75 64.0
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.2e-15 87.0 89 58.4
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.2e-15 87.0 64 65.6
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.6e-15 86.7 73 65.8
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 2.7e-15 85.9 116 59.5
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 3.6e-15 85.5 75 65.3
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 3.6e-15 85.5 75 58.7
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 6.1e-15 84.7 123 52.0
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 6.1e-15 84.7 69 68.1
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 6.1e-15 84.7 128 41.4
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 6.1e-15 84.7 70 67.1
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.3e-14 82.8 119 42.0
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 2.3e-14 82.8 131 42.0
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 3.0e-14 82.4 137 43.1
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 3.9e-14 82.0 137 46.7
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 3.9e-14 82.0 137 46.7
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 3.9e-14 82.0 137 46.7
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 5.2e-14 81.6 131 42.7
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.7e-14 81.3 73 60.3
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 8.8e-14 80.9 137 43.8
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 8.8e-14 80.9 85 54.1
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 8.8e-14 80.9 85 54.1
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.1e-13 80.5 69 59.4
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.5e-13 80.1 88 53.4
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.5e-13 80.1 77 61.0
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.5e-13 80.1 77 61.0
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.5e-13 80.1 125 53.6
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 2.0e-13 79.7 69 66.7
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.3e-13 79.0 72 65.3
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 5.7e-13 78.2 143 48.3
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 7.4e-13 77.8 136 39.0
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 9.7e-13 77.4 136 41.9
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 9.7e-13 77.4 136 41.9
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 9.7e-13 77.4 136 41.9
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 9.7e-13 77.4 136 42.6
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 9.7e-13 77.4 136 41.2
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 9.7e-13 77.4 78 57.7
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 9.7e-13 77.4 88 51.1
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 9.7e-13 77.4 82 54.9
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-12 77.0 88 51.1
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-12 77.0 88 51.1
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.3e-12 77.0 73 54.8
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.7e-12 76.6 77 57.1
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.7e-12 76.6 81 53.1
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 2.2e-12 76.3 73 54.8
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.2e-12 76.3 75 57.3
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.2e-12 76.3 128 43.0
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 2.8e-12 75.9 136 55.1
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.8e-12 75.9 78 51.3
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 3.7e-12 75.5 124 62.1
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 3.7e-12 75.5 66 60.6
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 3.7e-12 75.5 79 55.7
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.7e-12 75.5 71 57.7
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 6.3e-12 74.7 71 56.3
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 6.3e-12 74.7 136 41.9
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 6.3e-12 74.7 83 55.4
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 6.3e-12 74.7 82 53.7
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 8.2e-12 74.3 71 57.7
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 8.2e-12 74.3 82 54.9
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 1.1e-11 73.9 121 52.9
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.1e-11 73.9 121 48.8
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.1e-11 73.9 80 52.5
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.4e-11 73.6 71 57.7
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.4e-11 73.6 69 59.4
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 1.8e-11 73.2 71 56.3
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.8e-11 73.2 71 54.9
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.4e-11 72.8 86 51.2
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 2.4e-11 72.8 76 59.2
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.4e-11 72.8 84 56.0
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 3.1e-11 72.4 123 46.3
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 3.1e-11 72.4 89 52.8
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 4.1e-11 72.0 122 62.3
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 4.1e-11 72.0 80 53.8
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.1e-11 72.0 70 55.7
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.3e-11 71.6 75 52.0
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.3e-11 71.6 84 52.4
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 7.0e-11 71.2 71 56.3
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 7.0e-11 71.2 71 56.3
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 7.0e-11 71.2 71 56.3
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 7.0e-11 71.2 81 55.6
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 7.0e-11 71.2 78 48.7
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 7.0e-11 71.2 66 63.6
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 9.1e-11 70.9 79 53.2
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.2e-10 70.5 83 49.4
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.6e-10 70.1 84 50.0
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.6e-10 70.1 81 46.9
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.6e-10 70.1 82 50.0
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.6e-10 70.1 89 49.4
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.6e-10 70.1 88 48.9
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 2.6e-10 69.3 136 52.9
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 2.6e-10 69.3 69 59.4
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.5e-10 68.9 88 47.7
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 5.9e-10 68.2 84 48.8
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 7.7e-10 67.8 69 58.0
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.0e-09 67.4 106 57.5
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 1.3e-09 67.0 69 56.5
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.3e-09 67.0 118 49.2
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.7e-09 66.6 66 57.6
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 1.7e-09 66.6 142 52.1
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 2.2e-09 66.2 64 56.2
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.2e-09 66.2 80 51.2
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.2e-09 66.2 77 48.1
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.2e-09 66.2 61 62.3
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 2.9e-09 65.9 68 54.4
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 2.9e-09 65.9 82 47.6
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 3.8e-09 65.5 82 47.6
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 3.8e-09 65.5 74 50.0
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 5.0e-09 65.1 84 48.8
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 6.5e-09 64.7 72 51.4
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 6.5e-09 64.7 82 48.8
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 6.5e-09 64.7 128 39.8
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.5e-08 63.5 67 55.2
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 2.5e-08 62.8 69 55.1
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 5.5e-08 61.6 70 44.3
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 5.5e-08 61.6 70 44.3
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 5.5e-08 61.6 69 53.6
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 7.2e-08 61.2 81 45.7
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 7.2e-08 61.2 89 47.2
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 2.1e-07 59.7 85 41.2
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 2.7e-07 59.3 82 45.1
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 3.6e-07 58.9 77 44.2
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 1.8e-06 56.6 84 40.5
ATR0579G128 Amborella trichopoda HOM05D003853 ORTHO05D004171 2.3e-06 56.2 56 55.4
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.0e-06 55.5 69 46.4
CDE02G3795 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 5.2e-06 55.1 66 45.5


User provided reference genes

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