Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 1.2e-100 369.8 185 100.0
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 6.0e-71 271.2 180 71.7
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 2.3e-70 269.2 180 70.6
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 8.1e-68 260.8 180 68.3
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 1.1e-67 260.4 180 69.4
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 1.4e-67 260.0 180 68.9
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 1.4e-67 260.0 180 70.6
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 2.4e-67 259.2 180 70.6
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 4.0e-67 258.5 180 70.0
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 5.3e-67 258.1 180 70.0
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 6.9e-67 257.7 180 71.1
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 2.0e-66 256.1 181 66.9
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 3.4e-66 255.4 180 70.0
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 4.5e-66 255.0 180 68.3
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 4.5e-66 255.0 181 69.6
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 5.8e-66 254.6 181 71.3
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 5.8e-66 254.6 180 69.4
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 7.6e-66 254.2 181 71.3
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 7.6e-66 254.2 178 70.8
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 7.6e-66 254.2 180 65.0
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 7.6e-66 254.2 180 65.0
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.2e-65 252.7 180 65.0
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 2.2e-65 252.7 180 69.4
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 4.9e-65 251.5 181 68.0
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 8.4e-65 250.8 180 66.1
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 1.9e-64 249.6 180 66.1
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 1.9e-64 249.6 180 65.0
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 1.9e-64 249.6 180 65.0
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 1.9e-64 249.6 183 65.6
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 1.9e-64 249.6 181 67.4
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 2.4e-64 249.2 180 66.1
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 3.2e-64 248.8 178 65.7
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 7.1e-64 247.7 178 65.7
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 7.1e-64 247.7 178 66.3
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 7.1e-64 247.7 180 67.2
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 7.1e-64 247.7 180 65.6
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 1.2e-63 246.9 174 67.8
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 1.6e-63 246.5 180 66.7
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 1.6e-63 246.5 181 67.4
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 3.5e-63 245.4 178 65.7
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 7.9e-63 244.2 178 65.7
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 7.9e-63 244.2 178 68.0
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.0e-62 243.8 178 65.2
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 1.0e-62 243.8 180 64.4
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 1.3e-62 243.4 179 64.8
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 2.3e-62 242.7 180 63.9
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 2.3e-62 242.7 180 63.9
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 2.3e-62 242.7 180 63.9
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 2.3e-62 242.7 181 64.1
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 3.9e-62 241.9 179 64.8
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 3.9e-62 241.9 180 63.3
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 6.7e-62 241.1 177 65.0
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 6.7e-62 241.1 178 66.3
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 8.7e-62 240.7 181 63.0
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 1.5e-61 240.0 180 65.0
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 2.5e-61 239.2 180 62.8
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 2.5e-61 239.2 180 64.4
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 4.3e-61 238.4 178 63.5
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 5.6e-61 238.0 178 63.5
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 9.6e-61 237.3 178 62.9
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 9.6e-61 237.3 180 63.3
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 9.6e-61 237.3 175 66.3
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 9.6e-61 237.3 175 66.3
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 1.3e-60 236.9 180 63.3
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.6e-60 236.5 180 63.3
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.6e-60 236.5 180 60.0
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 2.1e-60 236.1 179 64.2
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 2.8e-60 235.7 178 62.9
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 3.7e-60 235.3 183 61.2
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 3.7e-60 235.3 181 63.0
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 6.2e-60 234.6 174 65.5
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.4e-59 233.4 174 65.5
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 1.8e-59 233.0 178 62.4
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 3.1e-59 232.3 163 69.3
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 4.0e-59 231.9 178 62.4
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 4.0e-59 231.9 175 64.6
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 4.0e-59 231.9 180 60.6
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 5.3e-59 231.5 176 61.4
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 5.3e-59 231.5 180 61.7
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 5.3e-59 231.5 179 60.9
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 5.3e-59 231.5 180 63.3
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 1.5e-58 229.9 180 60.6
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 7.6e-58 227.6 180 60.0
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 1.3e-57 226.9 174 61.5
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.7e-57 226.5 174 61.5
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 1.7e-57 226.5 182 62.6
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 2.9e-57 225.7 174 62.1
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 2.9e-57 225.7 176 59.1
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 4.9e-57 224.9 176 59.7
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 4.9e-57 224.9 189 58.7
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 8.4e-57 224.2 171 62.0
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.4e-56 223.4 172 62.2
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 9.3e-56 220.7 177 59.3
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 1.2e-55 220.3 179 59.8
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 7.9e-55 217.6 178 59.0
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 1.8e-54 216.5 179 60.3
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 3.9e-54 215.3 181 58.0
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 2.0e-50 203.0 180 55.0
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.3e-49 200.3 200 51.0
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 8.5e-49 197.6 192 52.6
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 5.5e-48 194.9 199 49.7
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 8.7e-46 187.6 171 53.8
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 3.3e-45 185.7 174 49.4
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 2.8e-44 182.6 154 57.8
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 1.1e-43 180.6 155 56.8
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.0e-41 174.1 142 59.9
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 6.5e-41 171.4 135 62.2
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 2.6e-37 159.5 116 68.1
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 5.3e-35 151.8 181 44.2
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 2.0e-34 149.8 104 69.2
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 4.2e-32 142.1 172 39.5
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 5.5e-32 141.7 178 39.9
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 4.7e-31 138.7 107 65.4
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 7.4e-29 131.3 169 40.8
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.3e-28 130.6 182 35.7
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.2e-28 129.8 192 37.0
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 4.1e-27 125.6 175 35.4
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 7.0e-27 124.8 87 65.5
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.7e-23 112.8 181 37.6
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 4.7e-23 112.1 171 33.9
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.2e-21 107.5 93 53.8
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 5.0e-17 92.0 74 60.8
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.5e-16 90.5 93 47.3
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 1.5e-08 63.9 45 66.7
HPP92_019041 Vanilla planifolia HOM05D000172 ORTHO05D000273 3.2e-08 62.8 134 31.3
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 5.5e-08 62.0 182 28.0
Hund26161 Selenicereus undatus HOM05D003111 ORTHO05D003502 1.8e-06 57.0 162 24.7
MBI03_g16539_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D000273 6.8e-06 55.1 164 27.4


User provided reference genes

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