Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 0.0e+00 1565.4 816 100.0
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 4.1e-148 529.6 818 42.7
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 5.2e-135 486.1 855 42.9
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 7.3e-129 465.7 846 41.0
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 5.4e-124 449.5 855 40.9
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 3.7e-120 436.8 859 38.3
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 4.8e-120 436.4 856 38.1
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 4.9e-117 426.4 836 38.9
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 2.4e-116 424.1 792 40.8
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 1.2e-115 421.8 830 39.5
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 1.2e-115 421.8 844 38.2
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 1.3e-114 418.3 821 38.0
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 1.9e-113 414.5 843 36.4
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 4.8e-112 409.8 844 37.8
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 9.0e-111 405.6 857 37.3
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 1.1e-108 398.7 841 36.7
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 7.9e-107 392.5 844 35.8
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 1.0e-106 392.1 848 36.9
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.8e-106 391.3 817 36.4
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 2.3e-106 391.0 847 37.3
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 4.3e-105 386.7 844 35.4
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 1.3e-104 385.2 787 37.7
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 2.8e-104 384.0 801 37.8
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 4.8e-104 383.3 1020 32.5
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 2.4e-103 380.9 791 38.6
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 5.3e-103 379.8 793 37.3
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 5.0e-101 373.2 871 35.8
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.9e-100 371.3 840 35.1
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 4.2e-100 370.2 824 35.4
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 6.1e-99 366.3 827 34.8
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 1.1e-97 362.1 543 45.3
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 1.3e-96 358.6 943 34.1
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 1.2e-94 352.1 846 35.1
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.4e-92 345.1 820 36.8
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 1.2e-91 342.0 555 42.5
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 1.6e-91 341.7 803 35.4
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 6.1e-91 339.7 811 37.5
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 1.1e-89 335.5 580 41.2
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 2.6e-89 334.3 854 33.8
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 9.7e-89 332.4 882 33.9
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 9.7e-89 332.4 837 33.8
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 2.2e-88 331.3 891 33.7
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 1.1e-87 328.9 844 34.4
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 2.4e-87 327.8 840 33.6
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 3.1e-87 327.4 886 33.5
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 7.0e-87 326.2 691 36.5
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 2.2e-85 321.2 863 33.5
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 8.5e-85 319.3 552 40.9
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 1.9e-84 318.2 882 32.1
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 4.2e-84 317.0 856 32.6
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 5.5e-84 316.6 882 31.4
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 1.4e-82 312.0 850 32.5
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 1.4e-82 312.0 845 32.9
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.8e-82 311.6 757 34.1
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 1.7e-80 305.1 877 33.0
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 2.2e-80 304.7 598 37.3
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 2.2e-80 304.7 840 32.4
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 4.1e-79 300.4 833 34.1
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 1.2e-78 298.9 898 31.2
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 2.0e-78 298.1 777 34.9
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 3.5e-78 297.4 789 34.1
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 3.5e-78 297.4 783 32.8
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 3.8e-77 293.9 833 31.8
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 2.1e-75 288.1 538 37.2
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 5.2e-74 283.5 799 34.0
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 6.7e-74 283.1 852 31.2
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 8.8e-74 282.7 889 29.1
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 2.6e-73 281.2 786 31.8
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 9.7e-73 279.3 515 37.1
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 8.2e-72 276.2 779 32.2
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 8.2e-72 276.2 754 32.9
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 8.2e-72 276.2 754 32.9
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 2.0e-70 271.6 778 32.9
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 3.5e-70 270.8 773 35.3
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 1.3e-69 268.9 639 35.7
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 1.3e-69 268.9 804 31.3
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 1.5e-68 265.4 791 32.7
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 3.2e-68 264.2 869 30.8
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 4.2e-68 263.8 756 33.1
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 5.5e-68 263.5 790 32.5
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 5.5e-68 263.5 787 31.3
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 3.0e-66 257.7 869 30.5
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 2.0e-65 255.0 607 33.6
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 4.4e-65 253.8 621 33.7
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 2.2e-64 251.5 779 31.3
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 6.3e-64 250.0 595 35.8
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 1.1e-63 249.2 768 31.0
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 2.4e-63 248.1 903 29.5
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 5.4e-63 246.9 737 31.3
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 5.4e-63 246.9 820 29.5
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 5.4e-63 246.9 855 29.2
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 1.2e-62 245.7 840 30.0
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 1.1e-60 239.2 689 30.3
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 8.0e-59 233.0 298 48.7
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 2.0e-57 228.4 476 35.7
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 1.8e-50 205.3 822 29.2
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 7.5e-49 199.9 835 27.2
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 6.4e-48 196.8 587 30.7
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 3.2e-47 194.5 596 32.7
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 5.0e-45 187.2 881 26.9
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 1.5e-44 185.7 746 29.6
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 3.6e-43 181.0 610 31.3
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 3.1e-42 177.9 649 30.7
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 9.8e-41 172.9 587 30.8
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 1.4e-39 169.1 634 29.3
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 4.1e-39 167.5 634 28.7
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.5e-30 137.9 161 45.3
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 2.6e-25 121.7 124 45.2
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 3.6e-11 74.7 185 35.1
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 4.5e-09 67.8 524 22.7
Dinv43435 Davidia involucrata HOM05D001393 ORTHO05D007477 1.1e-07 63.2 134 35.1
Mapoly0003s0122 Marchantia polymorpha HOM05D020720 ORTHO05D007477 4.6e-06 57.8 93 39.8


User provided reference genes

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