Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2107 Punica granatum HOM05D004606 ORTHO05D005086 3.3e-211 738.0 348 100.0
PGR044G0860 Punica granatum HOM05D004606 ORTHO05D005086 1.3e-156 556.6 294 91.5
Nn2g11896 Nelumbo nucifera HOM05D004606 ORTHO05D005086 1.5e-118 430.3 293 67.9
QL04p042370 Quercus lobata HOM05D004606 ORTHO05D005086 3.6e-117 425.6 307 65.8
QL04p042401 Quercus lobata HOM05D004606 ORTHO05D005086 1.4e-116 423.7 307 65.5
CSS0017380 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 7.5e-115 417.9 292 67.5
TAR626G1705 Trochodendron aralioides HOM05D004606 ORTHO05D005086 9.8e-115 417.5 293 65.2
QL04p042484 Quercus lobata HOM05D004606 ORTHO05D005086 1.7e-114 416.8 293 66.6
Ca_13137_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 4.9e-114 415.2 292 67.1
CSS0047394 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 8.3e-114 414.5 292 66.8
AT5G11330 Arabidopsis thaliana HOM05D004606 ORTHO05D005086 4.1e-113 412.1 309 64.4
Hma1.2p1_0000F.1_g000990 Hydrangea macrophylla HOM05D004606 ORTHO05D005086 7.0e-113 411.4 293 65.5
THA.LOC104815034 Tarenaya hassleriana HOM05D004606 ORTHO05D005086 7.0e-113 411.4 292 67.1
Cfa013195 Carpinus fangiana HOM05D004606 ORTHO05D005086 9.2e-113 411.0 293 66.9
AL6G21980 Arabidopsis lyrata HOM05D004606 ORTHO05D005086 1.2e-112 410.6 309 64.1
Cc11_g01620 Coffea canephora HOM05D004606 ORTHO05D005086 1.2e-112 410.6 293 64.2
TWI63G0154 Tripterygium wilfordii HOM05D004606 ORTHO05D005086 1.2e-112 410.6 292 66.4
Carub.0006s0979 Capsella rubella HOM05D004606 ORTHO05D005086 2.7e-112 409.5 309 63.8
Lj5g0014776 Lotus japonicus HOM05D004606 ORTHO05D005086 2.7e-112 409.5 295 65.1
Thhalv10013697m.g Eutrema salsugineum HOM05D004606 ORTHO05D005086 3.5e-112 409.1 307 64.8
C09p65540 Brassica napus HOM05D004606 ORTHO05D005086 4.5e-112 408.7 309 63.8
BcaC04g19239 Brassica carinata HOM05D004606 ORTHO05D005086 7.7e-112 407.9 309 63.8
A10p26400 Brassica napus HOM05D004606 ORTHO05D005086 7.7e-112 407.9 309 63.8
TPR.G15650 Trifolium pratense HOM05D004606 ORTHO05D005086 7.7e-112 407.9 312 63.5
MBI04_g33818_MAGBIO Magnolia biondii HOM05D004606 ORTHO05D005086 1.0e-111 407.5 292 64.4
Prupe.1G471700 Prunus persica HOM05D004606 ORTHO05D005086 1.0e-111 407.5 293 65.9
CARHR201940 Cardamine hirsuta HOM05D004606 ORTHO05D005086 1.7e-111 406.8 309 63.1
Rhsim02G0193100 Rhododendron simsii HOM05D004606 ORTHO05D005086 1.7e-111 406.8 292 64.7
BraA10t44697Z Brassica rapa HOM05D004606 ORTHO05D005086 2.9e-111 406.0 309 63.4
BcaB08g37070 Brassica carinata HOM05D004606 ORTHO05D005086 3.8e-111 405.6 310 63.5
BolC9t59377H Brassica oleracea HOM05D004606 ORTHO05D005086 6.6e-111 404.8 292 65.4
Sp6g32250 Schrenkiella parvula HOM05D004606 ORTHO05D005086 6.6e-111 404.8 309 64.1
FvH4_2g29790 Fragaria vesca HOM05D004606 ORTHO05D005086 8.6e-111 404.4 293 65.2
Gohir.A02G109707 Gossypium hirsutum HOM05D004606 ORTHO05D005086 8.6e-111 404.4 305 63.9
Oeu031575.3 Olea europaea HOM05D004606 ORTHO05D005086 1.1e-110 404.1 292 64.0
Duzib187G0213 Durio zibethinus HOM05D004606 ORTHO05D005086 1.5e-110 403.7 292 65.4
Thecc.09G147400 Theobroma cacao HOM05D004606 ORTHO05D005086 1.9e-110 403.3 292 66.8
Potri.018G032500 Populus trichocarpa HOM05D004606 ORTHO05D005086 2.5e-110 402.9 292 65.8
Sopen08g021410 Solanum pennellii HOM05D004606 ORTHO05D005086 3.3e-110 402.5 293 64.8
Sabra18G0033400 Salix brachista HOM05D004606 ORTHO05D005086 5.6e-110 401.7 292 65.1
FAN15G1610 Fragaria x ananassa HOM05D004606 ORTHO05D005086 9.5e-110 401.0 293 64.2
Solyc08g067470.3 Solanum lycopersicum HOM05D004606 ORTHO05D005086 9.5e-110 401.0 293 63.8
Lj7C716G6 Lonicera japonica HOM05D004606 ORTHO05D005086 1.6e-109 400.2 292 64.4
Ca_12923_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 3.6e-109 399.1 292 66.1
FAN24G2357 Fragaria x ananassa HOM05D004606 ORTHO05D005086 3.6e-109 399.1 293 64.5
Glyma.17G206700 Glycine max HOM05D004606 ORTHO05D005086 3.6e-109 399.1 295 64.7
Gorai.013G110500 Gossypium raimondii HOM05D004606 ORTHO05D005086 3.6e-109 399.1 305 62.3
Medtr1g011690 Medicago truncatula HOM05D004606 ORTHO05D005086 6.1e-109 398.3 294 64.6
Aa31LG3G15860 Aethionema arabicum HOM05D004606 ORTHO05D005086 1.8e-108 396.7 292 63.7
MD15G1118300 Malus domestica HOM05D004606 ORTHO05D005086 1.8e-108 396.7 293 62.8
Peaxi162Scf00251g01122 Petunia axillaris HOM05D004606 ORTHO05D005086 3.0e-108 396.0 293 62.8
PGSC0003DMG400025535 Solanum tuberosum HOM05D004606 ORTHO05D005086 3.0e-108 396.0 293 63.1
CiPaw.07G219400 Carya illinoinensis HOM05D004606 ORTHO05D005086 5.2e-108 395.2 294 63.6
Oeu045189.1 Olea europaea HOM05D004606 ORTHO05D005086 5.2e-108 395.2 292 62.0
GSVIVG01035774001 Vitis vinifera HOM05D004606 ORTHO05D005086 1.5e-107 393.7 293 63.8
RcHm_v2.0_Chr6g0298811 Rosa chinensis HOM05D004606 ORTHO05D005086 2.6e-107 392.9 293 63.1
Oeu045190.1 Olea europaea HOM05D004606 ORTHO05D005086 3.4e-107 392.5 292 62.0
Nitab4.5_0002339g0060 Nicotiana tabacum HOM05D004606 ORTHO05D005086 7.5e-107 391.3 293 62.8
MD08G1141800 Malus domestica HOM05D004606 ORTHO05D005086 9.8e-107 391.0 293 62.1
Migut.A00299 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.3e-106 390.6 292 60.6
Lsat_1_v5_gn_1_40980 Lactuca sativa HOM05D004606 ORTHO05D005086 1.3e-106 390.6 295 63.1
Nitab4.5_0000508g0210 Nicotiana tabacum HOM05D004606 ORTHO05D005086 1.3e-106 390.6 293 62.8
Dinv11601 Davidia involucrata HOM05D004606 ORTHO05D005086 1.7e-106 390.2 275 66.5
Ciclev10008268m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.2e-106 389.8 293 63.8
Sed0001356 Sechium edule HOM05D004606 ORTHO05D005086 6.4e-106 388.3 294 61.6
Eucgr.C02826 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.8e-105 386.7 292 64.7
PSO017G2258 Papaver somniferum HOM05D004606 ORTHO05D005086 5.4e-105 385.2 293 61.4
PSO170G2975 Papaver somniferum HOM05D004606 ORTHO05D005086 5.4e-105 385.2 293 61.4
AUR62032354 Chenopodium quinoa HOM05D004606 ORTHO05D005086 9.2e-105 384.4 293 61.8
Manes.16G118200 Manihot esculenta HOM05D004606 ORTHO05D005086 1.2e-104 384.0 293 60.4
CSS0006183 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 2.7e-104 382.9 292 60.6
Aqoxy7G01977_Aqoxy7G01978 Aquilegia oxysepala HOM05D004606 ORTHO05D005086 3.5e-104 382.5 293 61.4
Phvul.001G053900 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 4.6e-104 382.1 295 62.7
Duzib168G1788 Durio zibethinus HOM05D004606 ORTHO05D005086 1.7e-103 380.2 292 61.6
Phvul.001G053700 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 1.7e-103 380.2 333 59.5
vmacro11130 Vaccinium macrocarpon HOM05D004606 ORTHO05D005086 1.5e-102 377.1 293 61.8
VMungo0647G1004 Vigna mungo HOM05D004606 ORTHO05D005086 1.9e-102 376.7 294 63.3
CsaV3_2G031750 Cucumis sativus L. HOM05D004606 ORTHO05D005086 3.3e-102 375.9 295 61.4
arahy.Tifrunner.gnm1.ann1.K28DE3 Arachis hypogaea HOM05D004606 ORTHO05D005086 4.7e-101 372.1 300 59.3
Psat6g030120 Pisum sativum HOM05D004606 ORTHO05D005086 1.0e-100 370.9 253 68.0
EL10Ac2g02564 Beta vulgaris HOM05D004606 ORTHO05D005086 1.4e-100 370.5 292 61.0
Eucgr.C02822 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.4e-100 370.5 293 60.1
MELO3C011226.2 Cucumis melo HOM05D004606 ORTHO05D005086 4.0e-100 369.0 295 60.7
Oeu045188.1 Olea europaea HOM05D004606 ORTHO05D005086 8.9e-100 367.9 292 58.2
Sc09g0008700 Simmondsia chinensis HOM05D004606 ORTHO05D005086 7.5e-99 364.8 298 60.4
ClCG08G013020 Citrullus lanatus HOM05D004606 ORTHO05D005086 9.8e-99 364.4 293 57.0
SGA_v2.0_scaffold448G51772 Striga asiatica HOM05D004606 ORTHO05D005086 1.3e-98 364.0 292 58.6
Migut.A00296 Erythranthe guttata HOM05D004606 ORTHO05D005086 2.9e-98 362.8 293 58.0
Lalb_Chr22g0361571 Lupinus albus HOM05D004606 ORTHO05D005086 8.3e-98 361.3 294 60.2
FAN27G1511 Fragaria x ananassa HOM05D004606 ORTHO05D005086 1.1e-97 360.9 293 60.1
Eucgr.C02820 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.1e-97 359.0 293 57.0
Migut.A00292 Erythranthe guttata HOM05D004606 ORTHO05D005086 3.5e-96 355.9 293 57.0
COL.COLO4_24007 Corchorus olitorius HOM05D004606 ORTHO05D005086 6.0e-96 355.1 267 62.2
Eucgr.C02823 Eucalyptus grandis HOM05D004606 ORTHO05D005086 6.0e-96 355.1 293 57.3
PGR044G1635 Punica granatum HOM05D004606 ORTHO05D005086 1.7e-95 353.6 294 56.5
ClCG08G013030 Citrullus lanatus HOM05D004606 ORTHO05D005086 6.6e-95 351.7 293 55.3
Eucgr.C02825 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.9e-94 350.1 293 56.0
Gohir.D03G064400 Gossypium hirsutum HOM05D004606 ORTHO05D005086 5.6e-94 348.6 305 57.4
Eucgr.L02556 Eucalyptus grandis HOM05D004606 ORTHO05D005086 9.5e-94 347.8 293 55.3
Ciclev10008384m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.8e-93 346.3 293 53.2
Ciclev10008396m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.7e-93 345.5 293 52.9
Ciclev10010301m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.7e-93 345.5 293 53.9
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 4.7e-93 345.5 292 55.8
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 4.7e-93 345.5 292 55.8
ATR0051G060 Amborella trichopoda HOM05D004606 ORTHO05D005086 8.1e-93 344.7 296 57.8
Ciclev10008398m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.4e-92 344.0 293 52.6
arahy.Tifrunner.gnm1.ann1.Z34R6V Arachis hypogaea HOM05D004606 ORTHO05D005086 2.3e-92 343.2 251 62.5
Ciclev10008369m.g Citrus clementina HOM05D004606 ORTHO05D005086 5.2e-92 342.0 293 52.6
CsaV3_2G031760 Cucumis sativus L. HOM05D004606 ORTHO05D005086 1.2e-91 340.9 293 53.9
Migut.A00297 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.2e-91 340.9 293 55.3
Migut.A00293 Erythranthe guttata HOM05D004606 ORTHO05D005086 5.8e-91 338.6 293 54.6
Ciclev10010709m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.3e-90 337.4 299 53.2
Ciclev10010634m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.9e-90 336.3 302 50.7
MELO3C011227.2 Cucumis melo HOM05D004606 ORTHO05D005086 8.3e-90 334.7 294 54.1
Eucgr.L01635 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.1e-88 330.1 251 61.4
Eucgr.L01636 Eucalyptus grandis HOM05D004606 ORTHO05D005086 8.6e-87 324.7 293 52.9
Ciclev10008450m.g Citrus clementina HOM05D004606 ORTHO05D005086 5.6e-86 322.0 293 51.2
ECA233G1913 Erigeron canadensis HOM05D004606 ORTHO05D005086 9.5e-86 321.2 265 58.5
Os06g0597600 Oryza sativa ssp. japonica HOM05D004606 ORTHO05D005086 6.2e-85 318.5 295 55.3
Zm00001eb385840 Zea mays HOM05D004606 ORTHO05D005086 1.8e-84 317.0 293 54.9
Glyma.14G127200 Glycine max HOM05D004606 ORTHO05D005086 4.9e-82 308.9 255 58.8
TAR626G0087 Trochodendron aralioides HOM05D004606 ORTHO05D005086 5.4e-81 305.4 224 62.9
SEGI_39416 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 2.7e-80 303.1 293 50.5
PGR044G1641 Punica granatum HOM05D004606 ORTHO05D005086 3.5e-80 302.8 253 56.1
Medtr1g011700 Medicago truncatula HOM05D004606 ORTHO05D005086 1.1e-78 297.7 295 52.5
Ciclev10010533m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.9e-78 297.0 293 49.8
SEGI_00162 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 1.9e-78 297.0 293 50.2
AUR62041849 Chenopodium quinoa HOM05D004606 ORTHO05D005086 2.4e-73 280.0 201 63.7
Potri.006G248800 Populus trichocarpa HOM05D004606 ORTHO05D005086 2.7e-72 276.6 230 59.1
MD15G1335000 Malus domestica HOM05D004606 ORTHO05D005086 1.0e-71 274.6 200 61.5
CAN.G211.3 Capsicum annuum HOM05D004606 ORTHO05D005086 7.3e-70 268.5 250 54.0
Pp3c18_1340 Physcomitrium patens HOM05D004606 ORTHO05D005086 6.4e-66 255.4 300 43.7
Atru.chr7.2235 Acer truncatum HOM05D004606 ORTHO05D005086 1.4e-65 254.2 299 47.8
Haze_21597 Corylus avellana HOM05D004606 ORTHO05D005086 5.4e-65 252.3 202 60.9
Eucgr.C02829 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.9e-62 243.8 293 44.0
Mapoly0132s0019 Marchantia polymorpha HOM05D004606 ORTHO05D005086 5.3e-60 235.7 295 42.7
SalBow4G2310 Salvia bowleyana HOM05D004606 ORTHO05D005086 1.2e-59 234.6 181 61.9
Ciclev10010537m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.2e-58 230.3 252 48.0
COL.COLO4_24006 Corchorus olitorius HOM05D004606 ORTHO05D005086 2.9e-58 229.9 292 44.9
TPR.G15652 Trifolium pratense HOM05D004606 ORTHO05D005086 2.4e-57 226.9 162 68.5
Ciclev10010356m.g Citrus clementina HOM05D004606 ORTHO05D005086 9.3e-57 224.9 228 49.1
SalBow6G2354 Salvia bowleyana HOM05D004606 ORTHO05D005086 2.6e-51 206.8 229 45.0
SalBow6G5372 Salvia bowleyana HOM05D004606 ORTHO05D005086 4.5e-51 206.1 229 45.0
AagrBONN_evm.TU.Sc2ySwM_368.1911 Anthoceros agrestis HOM05D004606 ORTHO05D005086 3.0e-47 193.4 294 40.5
Atru.chr7.2355 Acer truncatum HOM05D004606 ORTHO05D005086 2.9e-42 176.8 293 36.2
CAN.G98.22 Capsicum annuum HOM05D004606 ORTHO05D005086 5.5e-41 172.6 146 56.2
Cpa.g.sc91.30 Carica papaya HOM05D004606 ORTHO05D005086 2.1e-40 170.6 116 66.4
Ciclev10010790m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.5e-30 137.9 238 36.1
Cc11_g01610 Coffea canephora HOM05D004606 ORTHO05D005086 6.7e-23 112.5 76 67.1
Nn2g11897 Nelumbo nucifera HOM05D004606 ORTHO05D005086 2.4e-12 77.4 60 56.7
DCAR_010119 Daucus carota HOM05D000686 ORTHO05D000512 4.7e-08 63.2 322 23.0
Ah.01g001610 Amaranthus hybridus HOM05D000686 ORTHO05D000512 2.6e-06 57.4 169 31.4
Ah.07g198420 Amaranthus hybridus HOM05D000686 ORTHO05D000512 2.6e-06 57.4 169 31.4


User provided reference genes

Program Settings