Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 2.5e-259 898.3 467 100.0
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.5e-203 713.0 466 80.9
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.0e-199 698.0 467 77.5
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 5.6e-198 694.5 441 80.3
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 8.0e-197 690.6 449 80.0
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 5.8e-195 684.5 464 77.8
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 9.8e-195 683.7 457 76.8
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.3e-194 683.3 434 80.2
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 1.7e-194 682.9 464 77.4
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 4.9e-194 681.4 451 78.0
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.1e-193 680.2 458 76.9
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.1e-193 680.2 466 75.8
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 2.4e-193 679.1 452 79.2
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 5.4e-193 677.9 460 77.2
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 7.0e-193 677.6 485 74.0
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 9.2e-193 677.2 454 78.2
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.6e-192 676.4 442 78.1
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 1.3e-191 673.3 454 77.3
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 3.0e-191 672.2 450 77.3
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 3.0e-191 672.2 449 78.0
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 3.9e-191 671.8 492 72.0
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 6.6e-191 671.0 441 78.5
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 5.6e-190 667.9 462 76.2
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 7.3e-190 667.5 450 77.3
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 7.3e-190 667.5 444 78.2
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 3.6e-189 665.2 474 74.3
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 3.6e-189 665.2 454 76.7
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 3.6e-189 665.2 447 77.9
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 8.0e-189 664.1 465 74.2
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.1e-188 663.7 444 76.4
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 3.1e-188 662.1 451 75.8
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 3.1e-188 662.1 441 77.6
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 4.0e-188 661.8 447 77.6
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 5.2e-188 661.4 438 76.0
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 5.2e-188 661.4 470 74.0
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 5.2e-188 661.4 434 78.6
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 8.9e-188 660.6 434 78.8
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 2.0e-187 659.4 424 79.5
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 2.0e-187 659.4 449 76.2
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 4.4e-187 658.3 443 74.9
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 4.4e-187 658.3 449 75.7
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 4.4e-187 658.3 434 78.3
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.3e-186 656.8 459 74.1
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 4.9e-186 654.8 459 73.0
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 8.3e-186 654.1 459 73.2
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 8.3e-186 654.1 466 74.7
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 8.3e-186 654.1 423 79.4
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 1.1e-185 653.7 457 72.4
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.1e-185 653.7 457 72.9
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.2e-185 652.1 427 78.2
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.1e-185 651.7 465 73.8
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 5.4e-185 651.4 459 74.1
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 5.4e-185 651.4 448 75.2
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.6e-184 649.8 454 75.6
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 6.0e-184 647.9 427 78.0
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 7.8e-184 647.5 448 73.0
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 2.3e-183 646.0 512 69.5
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 5.1e-183 644.8 470 72.8
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 8.6e-183 644.0 457 74.6
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 3.3e-182 642.1 428 76.9
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 4.3e-182 641.7 454 74.7
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 7.3e-182 641.0 454 74.9
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 9.5e-182 640.6 454 74.4
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 2.8e-181 639.0 436 75.9
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 4.7e-181 638.3 443 74.9
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.1e-180 637.1 421 77.9
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 1.4e-180 636.7 445 73.5
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 1.4e-180 636.7 475 71.2
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 1.8e-180 636.3 433 76.2
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 2.3e-180 636.0 465 72.3
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 5.2e-180 634.8 443 74.5
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.2e-179 633.6 465 71.4
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.5e-179 633.3 465 71.2
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.5e-179 633.3 465 71.6
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.5e-179 633.3 459 72.1
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 2.0e-179 632.9 422 77.5
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 4.4e-179 631.7 461 71.4
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 4.4e-179 631.7 458 72.5
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.3e-178 630.2 464 70.9
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.7e-178 629.8 465 71.2
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 4.9e-178 628.2 465 70.8
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 6.4e-178 627.9 465 71.0
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 6.4e-178 627.9 464 71.3
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 6.4e-178 627.9 467 71.3
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 2.4e-177 625.9 465 71.2
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 3.2e-177 625.5 409 79.2
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 2.5e-174 615.9 399 79.7
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 7.3e-174 614.4 491 67.8
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 9.6e-174 614.0 475 70.1
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 6.8e-172 607.8 443 72.5
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 6.8e-172 607.8 432 73.6
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.3e-170 603.6 468 67.7
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.2e-170 602.8 406 76.4
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 3.2e-169 599.0 527 63.2
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 7.8e-168 594.3 406 76.8
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 3.0e-167 592.4 392 78.6
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 3.9e-167 592.0 468 66.5
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.3e-166 589.0 426 73.2
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 2.2e-162 576.2 425 68.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 2.3e-159 566.2 392 75.8
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 8.7e-159 564.3 445 67.9
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 2.1e-157 559.7 423 68.1
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 8.1e-157 557.8 408 72.1
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 4.5e-155 552.0 403 73.2
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 3.2e-153 545.8 386 72.5
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.3e-133 478.4 446 61.0
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 4.1e-132 475.7 444 57.9
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 3.4e-131 472.6 360 67.8
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.0e-130 471.1 318 78.0
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.1e-124 451.1 419 61.6
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 2.6e-123 446.4 433 56.8
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 2.6e-123 446.4 434 57.1
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 1.4e-121 440.7 329 68.1
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.8e-117 426.4 305 74.4
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 3.4e-102 376.3 388 55.7
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.8e-101 373.2 253 76.3
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.6e-80 303.1 212 74.5
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.5e-78 295.4 195 79.5
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 4.9e-77 292.7 202 76.7
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 1.9e-76 290.8 210 72.9
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.6e-70 270.4 204 71.6
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 2.7e-67 260.4 218 63.3
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 8.9e-63 245.4 147 82.3
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.4e-60 236.1 182 70.3
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.1e-56 224.2 485 34.8
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.1e-48 197.6 124 75.0
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.0e-34 150.6 137 62.8
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.0e-34 150.6 137 62.8
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 3.1e-31 140.6 102 70.6
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 4.5e-30 136.7 266 38.7
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.3e-29 135.2 151 52.3
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 2.2e-29 134.4 158 54.4
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 7.1e-28 129.4 101 71.3
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.2e-27 128.6 124 56.5
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 2.7e-27 127.5 266 36.8
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.7e-21 108.2 96 61.5
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 6.1e-19 99.8 123 54.5
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 1.0e-18 99.0 85 62.4
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 1.9e-12 78.2 61 59.0
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.9e-12 78.2 46 73.9
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.9e-12 78.2 46 73.9
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 5.5e-12 76.6 78 53.8
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 5.5e-12 76.6 46 69.6
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 5.5e-12 76.6 46 69.6
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 9.4e-12 75.9 92 51.1
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 4.6e-11 73.6 76 52.6
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 6.1e-11 73.2 165 35.2
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.8e-10 71.6 176 31.8
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 5.1e-10 70.1 82 48.8
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.5e-09 68.6 45 68.9
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 2.0e-09 68.2 91 45.1
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 2.5e-09 67.8 64 53.1
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 3.3e-09 67.4 64 53.1
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 5.7e-09 66.6 46 65.2
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 9.7e-09 65.9 64 51.6
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 9.7e-09 65.9 64 51.6
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 9.7e-09 65.9 64 51.6
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 9.7e-09 65.9 64 51.6
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 9.7e-09 65.9 64 51.6
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 9.7e-09 65.9 64 51.6
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 9.7e-09 65.9 64 51.6
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 1.7e-08 65.1 64 51.6
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 2.4e-07 61.2 48 66.7
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 3.4e-06 57.4 66 48.5
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 7.7e-06 56.2 47 59.6


User provided reference genes

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