Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 0.0e+00 1649.8 835 100.0
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 0.0e+00 1649.8 835 100.0
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 3.1e-231 805.8 855 52.3
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 8.9e-223 777.7 838 52.5
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 8.4e-221 771.2 852 51.5
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.4e-220 770.4 859 50.4
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 1.2e-219 767.3 862 49.8
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 3.3e-217 759.2 859 50.1
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 5.8e-214 748.4 865 48.9
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 9.9e-214 747.7 862 49.7
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 9.9e-214 747.7 851 50.3
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 2.2e-213 746.5 843 49.2
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 4.9e-213 745.3 862 48.5
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 4.9e-213 745.3 856 49.4
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 8.4e-213 744.6 848 49.3
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.2e-211 740.7 871 48.9
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 4.3e-209 732.3 862 48.4
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 2.1e-208 729.9 855 48.4
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 2.0e-206 723.4 845 48.6
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.4e-206 722.6 857 48.2
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 6.4e-205 718.4 874 47.9
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 1.4e-204 717.2 860 47.9
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 2.4e-204 716.5 858 48.3
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 5.4e-204 715.3 866 47.6
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.3e-202 710.7 869 47.3
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 8.1e-200 701.4 862 47.4
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 8.1e-200 701.4 863 47.6
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 9.0e-199 698.0 850 47.3
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 9.0e-199 698.0 850 47.3
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 5.8e-198 695.3 863 47.4
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 2.9e-197 693.0 866 45.8
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 8.4e-197 691.4 863 47.4
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 7.1e-196 688.3 859 46.3
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 9.3e-196 688.0 872 45.5
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.1e-195 686.8 855 47.3
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 7.9e-195 684.9 845 46.3
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.0e-194 684.5 824 47.7
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 5.1e-194 682.2 857 46.6
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 5.1e-194 682.2 824 47.1
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 8.7e-194 681.4 896 46.5
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.9e-193 680.2 876 46.7
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 4.3e-193 679.1 891 46.6
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 7.4e-193 678.3 849 47.3
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.3e-192 677.6 856 48.7
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 3.7e-192 676.0 878 46.2
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 3.7e-192 676.0 829 47.2
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.7e-192 676.0 876 46.5
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 2.4e-191 673.3 823 46.7
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.4e-190 669.5 876 44.5
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 4.5e-190 669.1 820 47.4
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 7.6e-190 668.3 841 46.7
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 7.6e-190 668.3 855 45.3
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.2e-189 666.8 850 45.4
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 6.5e-189 665.2 858 48.5
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 6.5e-189 665.2 827 46.6
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 4.2e-188 662.5 876 45.7
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.2e-187 661.0 828 47.1
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.6e-187 660.6 878 45.2
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 3.0e-186 656.4 851 44.8
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.9e-186 656.0 877 44.0
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 8.7e-186 654.8 826 47.0
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 2.5e-185 653.3 851 44.9
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.4e-183 647.5 822 45.0
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.4e-183 646.7 838 45.5
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.1e-183 646.4 873 43.1
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 5.3e-183 645.6 844 46.9
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.2e-182 644.4 851 43.6
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 2.0e-182 643.7 851 44.3
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.4e-182 642.9 893 42.4
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.3e-181 641.0 844 44.8
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 6.5e-181 638.6 829 45.5
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 6.5e-181 638.6 820 45.7
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 6.5e-181 638.6 845 45.2
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.7e-179 633.3 885 44.3
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 4.6e-179 632.5 818 45.5
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 4.6e-179 632.5 847 44.3
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 6.7e-178 628.6 920 43.9
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 7.4e-177 625.2 853 44.1
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 9.7e-177 624.8 864 43.8
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 2.8e-176 623.2 864 43.8
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 6.3e-176 622.1 825 46.8
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 1.1e-175 621.3 876 42.5
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 3.1e-175 619.8 837 44.6
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 3.1e-175 619.8 837 44.6
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 4.1e-175 619.4 850 42.9
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.2e-174 617.8 841 42.9
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.7e-173 614.0 844 43.2
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 1.1e-172 611.3 793 43.6
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.9e-172 610.5 925 43.0
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 5.5e-172 609.0 831 43.9
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.8e-170 604.0 856 41.9
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.7e-168 597.4 729 47.3
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 6.3e-168 595.5 943 41.8
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.0e-166 590.5 741 46.6
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 2.7e-163 580.1 784 42.5
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 6.1e-163 578.9 899 39.2
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 7.0e-159 565.5 748 45.1
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 5.9e-158 562.4 728 44.1
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.5e-156 557.8 805 42.1
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 3.2e-156 556.6 828 41.5
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 3.0e-154 550.1 839 40.4
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 8.2e-152 542.0 850 42.2
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 6.1e-147 525.8 638 47.0
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 1.5e-145 521.2 593 47.6
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 4.1e-143 513.1 855 37.7
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 1.7e-141 507.7 615 48.5
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 8.0e-139 498.8 699 42.2
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 7.8e-134 482.3 629 43.6
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.5e-132 478.0 629 45.0
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 3.7e-128 463.4 776 39.4
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.6e-126 456.4 656 42.1
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 3.6e-123 446.8 684 40.9
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.2e-120 437.6 567 43.9
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 4.7e-115 419.9 548 46.2
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 8.4e-104 382.5 503 43.9
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 9.6e-92 342.4 555 41.1
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 3.2e-87 327.4 355 51.3
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 3.2e-87 327.4 473 41.6
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 4.2e-87 327.0 548 37.0
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 1.3e-85 322.0 649 33.7
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.5e-84 318.5 370 48.9
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.4e-82 311.2 545 39.4
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.7e-80 305.1 621 34.6
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 2.9e-80 304.3 283 53.4
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 4.9e-80 303.5 960 28.3
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 4.2e-71 273.9 609 32.2
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 4.6e-70 270.4 528 32.8
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.6e-67 261.9 455 36.0
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 4.3e-60 237.3 558 31.5
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.1e-58 230.7 224 57.1
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 7.9e-54 216.5 327 41.6
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.3e-51 209.1 224 58.9
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 3.7e-51 207.6 271 46.1
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 5.9e-49 200.3 170 60.6
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 9.4e-47 193.0 192 56.8
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 5.2e-45 187.2 169 60.4
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 2.6e-44 184.9 170 58.8
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 3.1e-42 177.9 180 54.4
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 5.9e-41 173.7 250 40.8
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 2.9e-40 171.4 168 53.0
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 9.4e-39 166.4 174 60.9
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 8.0e-38 163.3 146 71.2
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.7e-35 155.6 277 37.2
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 3.7e-35 154.5 118 68.6
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 1.1e-31 142.9 444 27.9
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 7.2e-31 140.2 105 58.1
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 7.2e-31 140.2 116 60.3
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 9.4e-31 139.8 116 60.3
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 2.3e-29 135.2 114 56.1
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 5.7e-28 130.6 148 48.6
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 3.7e-27 127.9 148 48.0
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.8e-27 127.5 97 70.1
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.8e-26 125.6 98 68.4
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.2e-25 122.9 154 50.6
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.5e-25 120.9 102 65.7
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 5.9e-25 120.6 251 31.1
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.0e-24 119.8 726 23.0
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 3.8e-24 117.9 251 32.3
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 9.5e-23 113.2 99 54.5
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 3.6e-22 111.3 133 47.4
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 3.6e-22 111.3 193 33.7
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 6.8e-21 107.1 242 26.9
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 6.8e-21 107.1 133 45.9
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 8.9e-21 106.7 133 46.6
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 1.5e-20 105.9 134 45.5
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 2.0e-20 105.5 68 75.0
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 9.8e-12 76.6 68 63.2
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.9e-10 72.4 62 64.5
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.4e-10 72.0 191 29.8
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 7.0e-10 70.5 241 24.9
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 7.0e-10 70.5 62 61.3
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.6e-09 69.3 56 62.5
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.3e-08 65.5 87 49.4
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 4.3e-07 61.2 49 55.1
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 4.7e-06 57.8 39 71.8


User provided reference genes

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