Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 0.0e+00 1691.0 884 100.0
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.8e-250 869.8 908 57.5
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 6.5e-248 861.3 918 56.5
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 2.5e-247 859.4 915 57.0
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 2.7e-246 855.9 933 55.8
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 3.0e-245 852.4 896 57.4
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 8.2e-243 844.3 910 55.8
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 9.1e-242 840.9 918 55.7
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 6.5e-240 834.7 902 55.9
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.6e-238 830.1 920 55.8
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.7e-236 821.6 905 55.2
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 7.5e-236 821.2 913 55.1
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 7.5e-236 821.2 924 54.5
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 5.3e-234 815.1 926 53.7
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.0e-233 813.1 917 54.1
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 4.5e-233 812.0 951 54.2
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 1.1e-231 807.4 920 54.1
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.4e-229 800.4 793 59.1
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 1.7e-227 793.5 924 54.4
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 5.4e-226 788.5 948 52.6
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.1e-226 787.7 882 54.9
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 3.2e-223 779.2 961 51.5
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 1.2e-222 777.3 903 54.7
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 1.2e-222 777.3 946 51.9
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 4.4e-220 768.8 951 51.9
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 6.3e-219 765.0 945 51.7
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 6.3e-219 765.0 911 53.9
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.1e-218 764.2 1000 48.8
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 2.7e-217 759.6 928 52.8
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 7.8e-217 758.1 911 52.4
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.3e-216 757.3 920 52.4
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 2.9e-216 756.1 937 51.9
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.6e-215 751.9 931 51.2
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 9.5e-215 751.1 920 52.6
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 4.7e-214 748.8 914 52.5
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 8.9e-213 744.6 924 51.7
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 8.9e-213 744.6 900 52.8
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 2.0e-212 743.4 805 54.9
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.7e-211 740.3 902 50.7
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.9e-211 739.6 977 48.7
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.4e-211 738.4 928 50.5
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 8.3e-211 738.0 913 52.4
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-210 737.6 988 48.7
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.8e-210 736.9 953 50.8
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.4e-210 736.5 975 49.0
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.1e-210 735.7 982 48.6
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 2.7e-209 733.0 898 52.1
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 4.6e-209 732.3 740 57.6
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 2.3e-208 729.9 948 49.4
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 8.6e-208 728.0 975 48.2
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 1.9e-207 726.9 914 51.0
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 5.6e-207 725.3 1040 48.4
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.7e-206 722.2 931 50.6
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 1.2e-204 717.6 1094 44.7
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 2.9e-203 713.0 997 47.8
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.4e-202 710.7 932 49.9
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.2e-201 707.6 932 49.8
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 2.7e-201 706.4 907 50.8
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 2.7e-201 706.4 995 47.5
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 4.6e-201 705.7 836 53.2
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.7e-200 703.7 971 48.2
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 2.3e-200 703.4 946 48.0
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.2e-198 697.6 952 48.6
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.2e-198 697.6 837 51.9
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.3e-197 693.3 854 51.6
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 2.3e-197 693.3 844 51.7
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 8.9e-197 691.4 891 50.7
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 8.9e-197 691.4 846 50.1
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 7.5e-196 688.3 936 48.3
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.2e-193 681.0 840 50.7
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 2.1e-193 680.2 981 47.8
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 7.8e-193 678.3 897 50.2
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.5e-191 674.1 917 47.8
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.5e-191 674.1 907 50.2
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 7.3e-191 671.8 910 48.8
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 2.8e-190 669.8 915 48.7
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 5.2e-189 665.6 1011 44.9
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 2.4e-186 656.8 909 46.3
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.0e-184 651.4 838 48.7
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 3.3e-183 646.4 1014 44.7
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 4.3e-183 646.0 1012 44.7
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 6.2e-182 642.1 885 47.9
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.4e-181 640.2 899 46.3
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 5.2e-181 639.0 861 48.4
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 6.9e-181 638.6 941 47.5
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 7.6e-180 635.2 892 46.4
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 7.6e-180 635.2 892 46.4
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 6.4e-179 632.1 897 46.0
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 3.2e-178 629.8 905 46.1
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.6e-177 627.5 898 46.1
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.6e-177 627.5 861 47.6
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 2.7e-177 626.7 897 46.3
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 3.5e-177 626.3 912 45.2
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 1.3e-176 624.4 792 50.4
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 2.3e-176 623.6 915 45.2
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 8.7e-176 621.7 839 47.4
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 8.7e-176 621.7 864 46.9
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.5e-175 620.2 907 45.4
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.5e-175 620.2 864 46.8
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 2.5e-175 620.2 890 45.4
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 4.3e-175 619.4 889 46.3
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 5.6e-175 619.0 939 45.7
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 5.6e-175 619.0 966 44.7
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 7.3e-175 618.6 959 44.1
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 9.6e-175 618.2 843 49.0
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.1e-173 614.8 939 45.0
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.1e-173 614.8 915 45.0
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 1.1e-173 614.8 926 44.9
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.5e-172 610.9 891 45.2
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 5.8e-172 609.0 906 45.6
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 8.4e-171 605.1 930 45.8
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.2e-169 601.3 896 44.5
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.6e-169 600.9 897 44.5
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 2.1e-169 600.5 789 49.2
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.8e-168 597.4 827 46.7
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 5.6e-167 592.4 796 47.9
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.6e-166 590.9 890 45.3
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 2.4e-165 587.0 874 44.5
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 3.4e-164 583.2 916 44.1
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 3.8e-163 579.7 888 44.9
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 2.5e-159 567.0 897 44.4
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.6e-153 547.7 924 43.8
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 3.5e-153 546.6 930 43.2
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 1.4e-149 534.6 819 44.1
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 4.1e-149 533.1 775 46.8
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 3.2e-146 523.5 950 41.4
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.5e-143 514.6 906 41.2
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 8.0e-129 465.7 831 40.9
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 2.0e-124 451.1 794 42.1
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.5e-111 408.3 990 34.7
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.9e-106 391.3 823 36.6
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.9e-106 391.3 823 36.6
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 1.0e-99 369.0 682 40.2
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 6.6e-99 366.3 370 57.6
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.2e-95 355.5 542 45.2
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 2.4e-93 347.8 785 34.0
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.2e-85 320.9 330 55.8
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 8.1e-81 306.2 285 57.9
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 3.3e-74 284.3 965 28.3
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 4.2e-69 267.3 377 49.3
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.6e-66 256.9 380 46.8
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 3.5e-60 237.7 462 39.0
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 2.3e-59 235.0 394 44.7
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 3.6e-57 227.6 259 52.9
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 7.4e-50 203.4 186 57.5
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.1e-45 189.5 137 70.8
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 4.9e-38 164.1 214 48.6
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 3.7e-33 147.9 475 31.4
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 6.3e-33 147.1 193 49.7
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 6.3e-33 147.1 203 40.4
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 8.2e-33 146.7 172 48.8
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 3.2e-29 134.8 190 45.3
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 1.1e-26 126.3 160 43.8
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.5e-23 115.9 171 43.9
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 2.0e-23 115.5 112 55.4
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 1.7e-22 112.5 84 67.9
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 5.1e-19 100.9 89 57.3
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 8.8e-19 100.1 77 67.5
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 1.1e-18 99.8 69 73.9
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 1.5e-18 99.4 62 79.0
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 9.7e-18 96.7 95 53.7
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 2.2e-17 95.5 89 55.1
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 2.8e-17 95.1 115 49.6
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 4.8e-17 94.4 71 66.2
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 4.8e-17 94.4 61 77.0
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 9.1e-16 90.1 112 46.4
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 2.2e-14 85.5 98 52.0
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 3.2e-13 81.6 65 64.6
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 7.2e-13 80.5 60 75.0
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.8e-11 75.9 69 58.0
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 3.9e-11 74.7 112 41.1
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 8.8e-11 73.6 84 51.2
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 2.0e-10 72.4 126 38.9
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.6e-10 72.0 136 43.4
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.3e-09 69.7 44 81.8
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.1e-08 66.6 83 41.0
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 7.0e-08 63.9 64 50.0
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.2e-07 63.2 138 40.6
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 4.5e-07 61.2 66 48.5
MBI19_g07393_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D004199 5.9e-07 60.8 65 44.6
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 7.7e-07 60.5 61 52.5
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 2.9e-06 58.5 62 50.0
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 6.5e-06 57.4 51 56.9


User provided reference genes

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