Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 9.7e-143 510.8 261 100.0
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 4.1e-40 169.9 251 44.6
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 2.6e-39 167.2 181 51.9
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 5.9e-39 166.0 201 49.8
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 2.2e-38 164.1 206 47.1
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 3.8e-38 163.3 184 50.0
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.4e-37 161.4 218 45.4
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 1.4e-37 161.4 218 45.4
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 5.5e-37 159.5 177 48.6
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 1.2e-36 158.3 181 47.0
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 2.1e-36 157.5 184 46.2
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 2.7e-36 157.1 189 50.3
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 4.7e-36 156.4 213 45.1
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 1.0e-35 155.2 187 44.4
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 5.1e-35 152.9 184 44.6
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 6.7e-35 152.5 201 42.8
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 4.4e-34 149.8 179 47.5
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 1.3e-33 148.3 173 49.1
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 2.2e-33 147.5 185 44.3
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 6.3e-33 146.0 185 46.5
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 1.1e-32 145.2 175 46.3
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 1.8e-32 144.4 171 48.5
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 2.4e-32 144.1 214 43.0
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 4.1e-32 143.3 209 42.1
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 4.1e-32 143.3 174 46.0
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 9.1e-32 142.1 174 46.0
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 1.6e-31 141.4 146 47.3
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 1.3e-30 138.3 153 45.8
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 5.0e-30 136.3 184 42.4
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 5.0e-30 136.3 179 42.5
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 6.5e-30 136.0 169 46.2
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 6.5e-30 136.0 169 46.2
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 1.1e-29 135.2 204 39.7
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 1.1e-29 135.2 176 44.3
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 2.5e-29 134.0 198 43.9
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 3.2e-29 133.7 169 47.3
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 4.2e-29 133.3 171 45.0
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 5.5e-29 132.9 182 42.3
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 7.2e-29 132.5 149 48.3
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 7.2e-29 132.5 148 46.6
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 1.2e-28 131.7 171 43.3
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.6e-28 131.3 169 41.4
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 3.6e-28 130.2 162 44.4
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 4.7e-28 129.8 215 35.8
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 6.1e-28 129.4 134 50.0
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 1.0e-27 128.6 152 46.7
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 1.0e-27 128.6 152 46.7
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 1.4e-27 128.3 149 45.0
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 2.3e-27 127.5 208 40.9
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 4.0e-27 126.7 168 43.5
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 4.0e-27 126.7 172 40.7
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 1.5e-26 124.8 166 42.8
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 1.5e-26 124.8 205 37.1
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 1.5e-26 124.8 183 42.6
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 2.0e-26 124.4 169 42.0
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 2.6e-26 124.0 167 40.7
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 3.3e-26 123.6 167 40.1
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 3.3e-26 123.6 173 43.4
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 5.7e-26 122.9 183 39.3
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 9.7e-26 122.1 152 44.1
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 9.7e-26 122.1 172 40.7
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 3.7e-25 120.2 226 35.4
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 1.4e-24 118.2 200 42.0
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 1.8e-24 117.9 185 40.5
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 2.4e-24 117.5 190 36.8
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 5.3e-24 116.3 159 42.1
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 5.3e-24 116.3 143 46.2
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 9.1e-24 115.5 220 35.0
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 1.2e-23 115.2 176 42.0
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 1.6e-23 114.8 184 40.2
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 7.7e-23 112.5 149 43.0
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 1.7e-22 111.3 180 37.8
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 3.8e-22 110.2 160 41.2
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 5.0e-22 109.8 160 39.4
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 6.5e-22 109.4 158 41.1
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 4.2e-21 106.7 142 40.1
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 4.2e-21 106.7 186 36.0
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 5.5e-21 106.3 215 35.8
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 1.6e-20 104.8 180 38.3
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 2.1e-20 104.4 184 38.6
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 1.0e-19 102.1 187 35.8
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 4.0e-19 100.1 98 53.1
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 5.2e-19 99.8 172 36.0
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 8.8e-19 99.0 139 41.7
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 3.7e-17 93.6 167 33.5
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 8.3e-17 92.4 175 36.6
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 3.1e-16 90.5 148 40.5
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 2.0e-15 87.8 132 40.2
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 3.5e-15 87.0 112 43.8
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 1.0e-14 85.5 164 34.8
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 7.2e-13 79.3 144 36.1
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.6e-12 78.2 130 34.6
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 4.7e-12 76.6 130 34.6
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 8.0e-12 75.9 130 33.8
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 2.3e-11 74.3 125 34.4
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 2.3e-11 74.3 125 34.4
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 4.0e-11 73.6 152 30.3
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 1.2e-10 72.0 118 33.1
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 2.6e-10 70.9 107 32.7
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 2.9e-06 57.4 92 38.0


User provided reference genes

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