Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3148 Punica granatum HOM05D007893 ORTHO05D010042 8.1e-159 565.1 296 100.0
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 8.4e-71 272.7 299 50.5
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 1.9e-70 271.6 300 57.0
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 1.0e-68 265.8 271 59.4
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 3.3e-67 260.8 299 53.8
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 9.6e-67 259.2 300 49.0
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 3.4e-64 250.8 294 46.9
QL05p025350 Quercus lobata HOM05D007893 ORTHO05D010042 1.7e-63 248.4 300 53.3
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 3.5e-61 240.7 283 47.7
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.7e-60 238.4 268 48.9
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 2.3e-60 238.0 293 43.7
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 6.6e-60 236.5 271 48.3
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.8e-58 230.3 268 48.5
Atru.chr2.2027 Acer truncatum HOM05D007893 ORTHO05D010042 2.4e-57 228.0 304 52.0
Atru.chr2.2039 Acer truncatum HOM05D007893 ORTHO05D010042 2.4e-57 228.0 304 52.0
arahy.Tifrunner.gnm1.ann1.7C2XF6 Arachis hypogaea HOM05D007893 ORTHO05D010042 1.5e-56 225.3 273 48.0
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 2.6e-56 224.6 263 47.5
arahy.Tifrunner.gnm1.ann1.40GBPJ Arachis hypogaea HOM05D007893 ORTHO05D010042 9.9e-56 222.6 270 47.4
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 1.7e-55 221.9 271 48.0
VMungo1215G2510 Vigna mungo HOM05D007893 ORTHO05D010042 1.1e-54 219.2 283 45.2
Cpa.g.sc159.24 Carica papaya HOM05D007893 ORTHO05D010042 1.9e-54 218.4 230 58.3
arahy.Tifrunner.gnm1.ann1.AUE0A3 Arachis hypogaea HOM05D007893 ORTHO05D010042 2.4e-54 218.0 258 47.7
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 4.2e-54 217.2 272 45.6
GSVIVG01013113001 Vitis vinifera HOM05D007893 ORTHO05D010042 6.0e-53 213.4 287 49.1
ClCG10G008950 Citrullus lanatus HOM05D007893 ORTHO05D010042 7.9e-53 213.0 263 46.0
Psat2g137760 Pisum sativum HOM05D007893 ORTHO05D010042 3.0e-52 211.1 291 43.3
Potri.001G139300 Populus trichocarpa HOM05D007893 ORTHO05D010042 5.1e-52 210.3 293 48.1
Sabra01G0108300 Salix brachista HOM05D007893 ORTHO05D010042 8.7e-52 209.5 293 48.1
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 2.1e-50 204.9 293 47.8
TPR.G8086 Trifolium pratense HOM05D007893 ORTHO05D010042 2.4e-49 201.4 230 49.6
Eucgr.E00255 Eucalyptus grandis HOM05D007893 ORTHO05D010042 5.3e-49 200.3 228 48.2
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 1.2e-48 199.1 270 44.8
Ca_08153_v3 Cicer arietinum L. HOM05D007893 ORTHO05D010042 2.6e-48 198.0 236 46.2
Nn7g37761 Nelumbo nucifera HOM05D007893 ORTHO05D010042 2.4e-46 191.4 278 41.4
Cc08_g03180 Coffea canephora HOM05D007893 ORTHO05D010042 4.2e-46 190.7 290 45.9
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 1.2e-45 189.1 224 46.4
Duzib068G1049 Durio zibethinus HOM05D007893 ORTHO05D010042 2.1e-45 188.3 174 65.5
Nitab4.5_0002310g0060 Nicotiana tabacum HOM05D007893 ORTHO05D010042 4.6e-45 187.2 283 39.6
Lj7A473T51 Lonicera japonica HOM05D007893 ORTHO05D010042 2.3e-44 184.9 293 41.0
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 3.9e-44 184.1 286 38.8
MSTRG.23210 Avicennia marina HOM05D007893 ORTHO05D010042 2.5e-43 181.4 270 41.9
Migut.O00264 Erythranthe guttata HOM05D007893 ORTHO05D010042 8.2e-42 176.4 269 45.7
Lj3g0001800 Lotus japonicus HOM05D007893 ORTHO05D010042 2.4e-41 174.9 263 41.1
Lj3g0011187 Lotus japonicus HOM05D007893 ORTHO05D010042 2.4e-41 174.9 263 41.1
Oeu023344.1 Olea europaea HOM05D007893 ORTHO05D010042 3.1e-41 174.5 272 39.0
Oeu023345.1 Olea europaea HOM05D007893 ORTHO05D010042 3.1e-41 174.5 272 39.0
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.5e-40 170.6 183 50.8
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.5e-40 170.6 183 50.8
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.5e-40 170.6 183 50.8
SGA_v2.0_scaffold25G10745 Striga asiatica HOM05D007893 ORTHO05D010042 2.2e-39 168.3 260 40.0
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.2e-39 168.3 183 50.3
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.2e-39 168.3 183 50.3
DCAR_012172 Daucus carota HOM05D007893 ORTHO05D010042 3.8e-39 167.5 287 42.9
Medtr5g029690 Medicago truncatula HOM05D007893 ORTHO05D010042 3.8e-39 167.5 217 44.7
Gohir.D08G063700 Gossypium hirsutum HOM05D007893 ORTHO05D010042 3.2e-38 164.5 174 59.2
Manes.04G148100 Manihot esculenta HOM05D007893 ORTHO05D010042 9.3e-38 162.9 294 37.1
vmacro00309 Vaccinium macrocarpon HOM05D007893 ORTHO05D010042 1.0e-36 159.5 269 42.8
Nn6g33361 Nelumbo nucifera HOM05D007893 ORTHO05D010042 7.4e-35 153.3 277 36.8
Hma1.2p1_2831F.1_g329220 Hydrangea macrophylla HOM05D007893 ORTHO05D010042 2.0e-32 145.2 150 60.7
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 2.2e-31 141.7 251 34.3
Dinv25240 Davidia involucrata HOM05D007893 ORTHO05D010042 3.2e-30 137.9 177 55.4
Nitab4.5_0009549g0020 Nicotiana tabacum HOM05D007893 ORTHO05D010042 1.9e-27 128.6 277 32.5
MBI18_g42841_MAGBIO Magnolia biondii HOM05D007893 ORTHO05D010042 2.5e-27 128.3 200 39.5
Aqoxy4G00051 Aquilegia oxysepala HOM05D007893 ORTHO05D010042 4.1e-25 120.9 175 39.4
SalBow6G7259 Salvia bowleyana HOM05D007893 ORTHO05D010042 4.1e-25 120.9 175 39.4
Zm00001eb109140 Zea mays HOM05D007893 ORTHO05D010042 5.9e-24 117.1 273 30.8
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 2.5e-22 111.7 187 34.2
HPP92_022591 Vanilla planifolia HOM05D007893 ORTHO05D010042 1.6e-21 109.0 220 33.6
Nitab4.5_0005203g0030 Nicotiana tabacum HOM05D007893 ORTHO05D010042 7.9e-21 106.7 174 37.4
Peaxi162Scf00265g00033 Petunia axillaris HOM05D007893 ORTHO05D010042 3.0e-20 104.8 171 36.3
Sopen00g012250 Solanum pennellii HOM05D007893 ORTHO05D010042 2.8e-18 98.2 164 36.6
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.6e-13 82.4 295 27.8
Solyc03g120460.4 Solanum lycopersicum HOM05D000001 ORTHO05D009971 5.2e-12 77.4 109 40.4
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 9.7e-11 73.2 209 26.3
Gohir.A08G054000 Gossypium hirsutum HOM05D007893 ORTHO05D010042 8.2e-10 70.1 80 63.8
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 8.2e-10 70.1 166 28.3
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 1.1e-09 69.7 209 24.4
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 1.1e-09 69.7 205 24.9
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 1.1e-09 69.7 209 24.4
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 1.4e-09 69.3 160 26.2
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.8e-09 68.9 206 25.7
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 2.4e-09 68.6 157 27.4
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 3.1e-09 68.2 204 24.0
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 3.1e-09 68.2 148 29.1
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 4.1e-09 67.8 186 24.2
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 4.1e-09 67.8 158 27.8
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 7.0e-09 67.0 145 26.9
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 7.0e-09 67.0 146 27.4
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 9.1e-09 66.6 145 27.6
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.2e-08 66.2 158 27.8
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.6e-08 65.9 165 27.3
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 2.6e-08 65.1 149 26.8
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 3.5e-08 64.7 172 23.3
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 4.5e-08 64.3 145 26.2
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 4.5e-08 64.3 107 32.7
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 5.9e-08 63.9 134 27.6
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 5.9e-08 63.9 152 27.0
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.0e-07 63.2 84 36.9
BcaC06g34078 Brassica carinata HOM05D007496 ORTHO05D009479 1.3e-07 62.8 134 26.9
BolC7t43809H Brassica oleracea HOM05D007496 ORTHO05D009479 1.3e-07 62.8 134 26.9
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 1.3e-07 62.8 141 27.7
FvH4_5g31860 Fragaria vesca HOM05D007358 ORTHO05D009117 1.7e-07 62.4 164 28.0
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 1.7e-07 62.4 163 25.8
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.2e-07 62.0 154 24.7
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 3.8e-07 61.2 166 27.1
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 3.8e-07 61.2 137 28.5
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 5.0e-07 60.8 145 25.5
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 5.0e-07 60.8 161 26.7
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 5.0e-07 60.8 172 26.7
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 6.5e-07 60.5 150 26.7
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 6.5e-07 60.5 159 27.0
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 8.5e-07 60.1 163 27.6
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 1.1e-06 59.7 176 27.3
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 1.1e-06 59.7 168 28.0
SalBow6G6080 Salvia bowleyana HOM05D007893 ORTHO05D010042 1.1e-06 59.7 78 44.9
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 1.5e-06 59.3 170 24.1
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 1.5e-06 59.3 170 27.1
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.5e-06 59.3 130 26.9
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 1.9e-06 58.9 222 23.4
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 2.5e-06 58.5 167 28.1
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 2.5e-06 58.5 167 28.1
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 2.5e-06 58.5 96 29.2
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 2.5e-06 58.5 192 24.5
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 2.5e-06 58.5 161 26.1
Rhsim09G0071100 Rhododendron simsii HOM05D007496 ORTHO05D009479 2.5e-06 58.5 140 24.3
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 3.2e-06 58.2 195 20.0
SGA_v2.0_scaffold141G35594 Striga asiatica HOM05D017480 ORTHO05D026194 4.2e-06 57.8 48 56.2
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 5.5e-06 57.4 138 26.1
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 5.5e-06 57.4 166 22.9
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 5.5e-06 57.4 131 29.8
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 7.2e-06 57.0 93 29.0
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 7.2e-06 57.0 153 24.8
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 7.2e-06 57.0 168 25.6
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 7.2e-06 57.0 144 25.7
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 7.2e-06 57.0 162 27.8
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 7.2e-06 57.0 88 27.3
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 7.2e-06 57.0 142 28.2
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 7.2e-06 57.0 177 23.7
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 9.4e-06 56.6 147 25.9
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 9.4e-06 56.6 141 24.8
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 9.4e-06 56.6 185 25.4
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 9.4e-06 56.6 165 26.7
GSVIVG01017677001 Vitis vinifera HOM05D001779 ORTHO05D001753 9.4e-06 56.6 102 29.4


User provided reference genes

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