Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 2.7e-262 908.7 669 100.0
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 5.0e-200 701.8 688 82.0
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 5.5e-191 671.8 675 80.9
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 6.1e-190 668.3 677 80.8
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 7.5e-188 661.4 675 80.0
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 3.7e-187 659.1 674 80.0
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 1.5e-183 647.1 674 79.1
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 2.8e-182 642.9 678 78.9
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 8.0e-182 641.3 676 78.4
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 8.0e-182 641.3 676 78.3
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.0e-181 641.0 672 79.5
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 1.4e-181 640.6 676 79.1
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 6.8e-181 638.3 675 78.7
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.0e-180 636.7 674 78.8
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 3.4e-180 636.0 675 78.4
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 1.4e-178 630.6 674 78.0
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 2.0e-177 626.7 677 74.9
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 3.5e-177 625.9 675 78.2
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 3.5e-177 625.9 674 77.9
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 4.5e-177 625.5 672 77.7
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 5.9e-177 625.2 682 77.7
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 5.0e-176 622.1 462 71.4
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 1.9e-175 620.2 674 76.9
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 3.3e-175 619.4 674 77.3
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 3.3e-175 619.4 673 77.1
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 7.3e-175 618.2 675 76.7
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 7.3e-175 618.2 677 76.5
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 1.2e-174 617.5 674 77.6
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 2.1e-174 616.7 675 77.2
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 2.8e-174 616.3 674 76.9
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 3.6e-174 615.9 677 77.7
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 4.7e-174 615.5 674 76.6
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 8.0e-174 614.8 670 76.9
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 8.0e-174 614.8 674 76.3
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 1.0e-173 614.4 676 77.2
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 3.0e-173 612.8 678 76.3
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 6.8e-173 611.7 666 76.9
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.5e-172 610.5 689 75.6
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.0e-172 610.1 690 75.5
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 2.0e-172 610.1 674 76.1
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 3.4e-172 609.4 675 76.6
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 4.4e-172 609.0 676 76.6
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 5.7e-172 608.6 674 76.3
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 2.2e-171 606.7 676 76.3
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 2.9e-171 606.3 678 75.4
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 1.8e-170 603.6 669 76.4
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 3.2e-170 602.8 677 74.9
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 4.1e-170 602.4 674 75.7
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 9.2e-170 601.3 461 69.6
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 1.2e-169 600.9 461 68.1
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 3.5e-169 599.4 461 69.0
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 3.9e-168 595.9 675 75.3
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 3.3e-167 592.8 459 68.6
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 2.1e-166 590.1 668 75.4
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 2.8e-166 589.7 461 66.8
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 4.7e-166 589.0 671 74.4
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 1.1e-165 587.8 458 68.3
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 2.0e-164 583.6 474 67.3
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 4.4e-164 582.4 671 74.8
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 4.9e-163 578.9 671 74.2
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 6.4e-163 578.6 666 75.7
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 1.4e-162 577.4 671 74.1
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 1.9e-162 577.0 671 74.2
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 5.4e-162 575.5 672 74.0
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 6.0e-161 572.0 669 74.9
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.0e-160 571.2 669 74.7
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 2.3e-160 570.1 465 65.2
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 1.5e-159 567.4 671 73.8
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 1.9e-159 567.0 671 73.8
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.9e-159 567.0 668 74.7
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 2.5e-159 566.6 676 73.7
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 8.1e-158 561.6 712 71.6
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 3.1e-157 559.7 660 71.2
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 7.5e-156 555.1 670 72.8
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 1.1e-154 551.2 671 73.0
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 2.4e-154 550.1 670 73.3
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 3.2e-154 549.7 675 72.1
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 4.6e-153 545.8 671 72.9
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 3.3e-151 539.7 671 72.4
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 5.6e-151 538.9 462 63.2
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 2.8e-150 536.6 670 72.2
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 3.1e-149 533.1 672 72.3
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 5.2e-149 532.3 462 64.1
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 8.9e-149 531.6 458 60.5
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 8.9e-149 531.6 672 71.0
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 1.2e-148 531.2 455 63.5
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.5e-148 530.8 675 68.4
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.0e-148 530.4 617 75.9
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 1.1e-146 524.6 668 71.4
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 1.9e-146 523.9 668 71.4
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 2.4e-146 523.5 672 70.2
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 9.2e-146 521.5 591 52.8
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 1.6e-145 520.8 569 81.0
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 2.1e-145 520.4 675 70.4
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.7e-145 520.0 614 71.7
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 3.5e-145 519.6 456 61.0
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 7.8e-145 518.5 461 60.3
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 8.6e-144 515.0 727 63.8
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 3.8e-139 499.6 359 72.1
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 4.6e-137 492.7 389 67.4
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 3.0e-136 490.0 567 80.1
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 3.9e-136 489.6 454 59.0
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 4.3e-135 486.1 670 69.6
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 1.6e-126 457.6 671 67.8
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 2.1e-126 457.2 359 66.3
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 3.4e-116 423.3 679 63.3
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 4.5e-116 422.9 464 50.2
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 7.1e-114 415.6 711 62.0
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.8e-112 411.0 352 64.2
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.0e-112 410.2 414 56.5
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 3.6e-105 386.7 318 65.7
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 1.1e-101 375.2 401 52.9
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.4e-98 364.8 292 68.5
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 7.4e-95 352.4 279 67.4
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.3e-80 304.3 667 58.8
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 1.2e-65 255.4 194 69.6
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 2.1e-57 228.0 467 34.0
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 7.5e-55 219.5 233 56.7
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 4.1e-53 213.8 143 79.7
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 6.0e-52 209.9 481 31.6
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 1.5e-50 205.3 194 50.5
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 8.0e-49 199.5 169 58.0
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 1.1e-48 199.1 344 39.0
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 3.1e-48 197.6 173 65.3
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 8.9e-48 196.1 525 29.1
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 7.8e-44 183.0 397 39.5
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 9.5e-42 176.0 185 57.3
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 8.1e-41 172.9 147 61.2
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 4.0e-40 170.6 279 45.5
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.4e-37 162.2 130 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 1.6e-36 158.7 147 53.7
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.8e-33 147.9 138 60.1
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 2.8e-33 147.9 275 40.7
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 8.4e-30 136.3 294 89.1
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 1.0e-27 129.4 102 64.7
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 6.6e-19 100.1 526 23.2
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.5e-18 99.0 87 63.2
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 1.5e-18 99.0 113 49.6
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 8.1e-17 93.2 66 71.2
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 9.9e-15 86.3 508 23.0
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.7e-14 85.5 89 50.6
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 4.9e-14 84.0 291 35.4
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 9.3e-13 79.7 73 54.8
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 7.9e-12 76.6 185 31.9
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 2.3e-11 75.1 53 75.5
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.1e-11 73.9 53 73.6
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 1.5e-10 72.4 53 67.9
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.8e-08 65.5 50 66.0
Os07g0205200 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 4.5e-07 60.8 91 41.8


User provided reference genes

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