Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 4.6e-77 291.2 153 100.0
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 7.0e-65 250.8 153 83.7
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.0e-64 249.2 152 83.6
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 2.0e-64 249.2 152 83.6
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 2.6e-64 248.8 153 85.6
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 3.5e-64 248.4 127 96.1
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.0e-63 246.9 152 82.9
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 1.3e-63 246.5 153 83.0
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 3.8e-63 245.0 153 84.3
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.1e-61 239.2 154 84.4
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 3.6e-61 238.4 153 79.1
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.8e-60 236.1 155 82.6
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.5e-59 233.0 147 78.2
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.0e-59 232.6 147 77.6
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 2.0e-59 232.6 127 88.2
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 4.4e-59 231.5 150 83.3
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 4.4e-59 231.5 151 84.8
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 7.5e-59 230.7 153 77.1
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 2.8e-58 228.8 153 81.7
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 3.7e-58 228.4 156 79.5
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 6.3e-58 227.6 153 81.0
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 1.4e-57 226.5 153 76.5
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 1.4e-57 226.5 153 81.0
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.8e-57 226.1 156 80.1
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.4e-57 225.7 153 78.4
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 3.1e-57 225.3 153 76.5
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 4.1e-57 224.9 150 79.3
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 5.3e-57 224.6 153 77.1
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 9.1e-57 223.8 151 78.1
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 2.7e-56 222.2 152 72.4
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 3.5e-56 221.9 127 84.3
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 3.5e-56 221.9 157 73.2
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 3.5e-56 221.9 152 78.3
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 4.5e-56 221.5 144 77.8
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 5.9e-56 221.1 149 80.5
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 5.9e-56 221.1 153 75.2
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 7.7e-56 220.7 143 76.9
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 1.0e-55 220.3 154 76.0
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.0e-55 220.3 127 84.3
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 1.3e-55 219.9 148 79.7
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 2.2e-55 219.2 148 76.4
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 2.2e-55 219.2 148 79.7
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 2.9e-55 218.8 153 73.2
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 2.9e-55 218.8 168 70.2
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 2.9e-55 218.8 151 79.5
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 3.8e-55 218.4 153 73.2
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 3.8e-55 218.4 153 73.2
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 3.8e-55 218.4 167 70.7
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 3.8e-55 218.4 153 73.2
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 6.5e-55 217.6 155 77.4
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.9e-54 216.1 153 71.9
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 2.5e-54 215.7 123 85.4
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 3.2e-54 215.3 155 76.8
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 4.2e-54 214.9 153 72.5
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 5.5e-54 214.5 153 72.5
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 5.5e-54 214.5 146 76.0
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 5.5e-54 214.5 154 74.7
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 9.4e-54 213.8 153 71.9
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 9.4e-54 213.8 126 81.7
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 9.4e-54 213.8 151 71.5
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.2e-53 213.4 152 73.0
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.2e-53 213.4 152 72.4
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.1e-53 212.6 152 78.3
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 2.1e-53 212.6 153 73.9
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 2.7e-53 212.2 157 71.3
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 2.7e-53 212.2 141 78.0
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 3.6e-53 211.8 155 72.3
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 4.7e-53 211.5 155 72.9
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 6.1e-53 211.1 157 78.3
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 8.0e-53 210.7 125 84.8
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 8.0e-53 210.7 144 77.1
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.0e-52 210.3 154 70.1
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 1.4e-52 209.9 153 70.6
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.8e-52 209.5 156 76.9
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 1.8e-52 209.5 154 74.0
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 1.8e-52 209.5 154 74.0
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 1.8e-52 209.5 154 74.0
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 2.3e-52 209.1 153 72.5
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 2.3e-52 209.1 153 71.9
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 3.0e-52 208.8 128 79.7
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.0e-52 208.4 153 71.9
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 4.0e-52 208.4 155 73.5
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 5.2e-52 208.0 144 73.6
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.2e-52 208.0 144 73.6
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.2e-52 208.0 144 73.6
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 5.2e-52 208.0 125 82.4
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 8.8e-52 207.2 152 71.7
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.2e-51 206.8 153 71.2
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.2e-51 206.8 153 72.5
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 1.2e-51 206.8 153 71.2
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 3.4e-51 205.3 124 81.5
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 5.7e-51 204.5 125 80.0
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.7e-51 204.5 153 71.9
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.5e-51 204.1 159 69.8
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.3e-50 203.4 153 69.3
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 1.7e-50 203.0 166 71.7
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.2e-50 202.6 148 70.3
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.2e-50 202.6 121 81.8
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.8e-50 201.4 152 73.0
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.8e-50 201.4 152 73.0
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.1e-49 200.3 125 80.8
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.1e-49 200.3 123 82.1
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.1e-49 200.3 166 71.1
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.4e-49 199.9 118 84.7
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 4.1e-49 198.4 116 86.2
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.2e-48 196.8 149 71.1
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.6e-48 196.4 119 79.0
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.7e-48 195.7 120 78.3
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 2.9e-47 192.2 121 79.3
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 3.8e-47 191.8 116 81.9
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 8.5e-47 190.7 209 58.9
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.9e-46 189.5 150 66.0
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 1.9e-46 189.5 115 81.7
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 9.4e-46 187.2 119 78.2
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 9.4e-46 187.2 144 68.8
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.6e-45 186.4 120 75.0
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.1e-45 186.0 104 89.4
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.1e-45 186.0 104 89.4
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 2.1e-45 186.0 115 80.9
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 4.7e-45 184.9 118 79.7
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.0e-44 183.7 154 67.5
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.3e-44 182.6 120 75.8
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 6.8e-44 181.0 155 65.8
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.2e-43 180.3 111 77.5
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.2e-43 180.3 121 74.4
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 2.0e-43 179.5 122 75.4
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 4.4e-43 178.3 125 71.2
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 4.4e-43 178.3 153 65.4
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 7.5e-43 177.6 118 71.2
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.8e-43 177.2 152 62.5
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 1.7e-42 176.4 110 77.3
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 2.4e-41 172.6 103 78.6
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.4e-41 171.4 198 53.0
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 7.0e-41 171.0 155 58.7
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 7.0e-41 171.0 102 84.3
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.6e-40 169.9 154 66.9
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 5.0e-39 164.9 124 71.8
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.6e-39 164.1 144 62.5
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.6e-39 164.1 144 62.5
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.6e-39 164.1 144 62.5
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 2.5e-38 162.5 143 66.4
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 7.3e-38 161.0 95 82.1
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 2.0e-35 152.9 91 79.1
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 9.8e-35 150.6 128 64.8
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 6.4e-34 147.9 144 57.6
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 2.4e-33 146.0 119 60.5
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 7.8e-32 141.0 106 70.8
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 8.6e-31 137.5 76 92.1
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 3.3e-30 135.6 153 50.3
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.1e-25 120.6 123 61.8
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 2.3e-23 112.8 74 81.1
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 6.6e-23 111.3 64 82.8
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 6.6e-23 111.3 58 89.7
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 8.6e-23 110.9 120 47.5
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 1.6e-21 106.7 59 83.1
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 2.8e-21 105.9 75 68.0
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.8e-20 103.2 76 69.7
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 2.3e-20 102.8 75 66.7
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 3.1e-20 102.4 75 66.7
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 6.8e-20 101.3 60 83.3
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 2.3e-15 86.3 64 65.6
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 3.3e-14 82.4 131 40.5
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 5.2e-12 75.1 132 34.8
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 2.4e-09 66.2 148 29.7
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 3.2e-09 65.9 39 74.4


User provided reference genes

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