Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 2.0e-172 609.0 307 100.0
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 1.4e-101 373.6 266 67.3
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 9.3e-101 370.9 281 67.3
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 3.5e-100 369.0 286 65.0
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 3.0e-99 365.9 266 64.7
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 3.0e-99 365.9 284 64.8
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 3.9e-99 365.5 299 60.5
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 6.6e-99 364.8 268 66.4
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 8.7e-99 364.4 284 63.7
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.9e-98 363.2 281 65.1
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.5e-98 362.8 284 63.4
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.3e-98 362.1 284 63.4
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.6e-97 360.1 266 62.8
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 2.1e-97 359.8 285 63.2
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 2.1e-97 359.8 281 60.9
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 4.8e-97 358.6 296 61.5
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.1e-96 357.5 272 64.3
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 1.1e-96 357.5 277 64.3
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.1e-96 357.5 269 63.9
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.1e-96 357.5 287 62.0
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.4e-96 357.1 263 63.5
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 1.8e-96 356.7 274 63.9
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 1.8e-96 356.7 272 63.2
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 2.4e-96 356.3 290 63.4
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 6.9e-96 354.8 282 62.1
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 9.0e-96 354.4 287 58.9
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.0e-95 353.2 266 64.7
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 9.9e-95 350.9 282 63.5
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.7e-94 350.1 275 63.3
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 2.9e-94 349.4 276 62.0
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.8e-94 349.0 263 62.4
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.9e-93 346.7 294 58.5
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.4e-93 346.3 291 60.1
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.2e-92 344.0 275 62.2
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.6e-92 343.6 292 59.6
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 2.1e-92 343.2 265 63.4
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 3.5e-92 342.4 274 62.8
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 2.3e-91 339.7 268 61.2
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 3.9e-91 339.0 298 58.1
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 8.7e-91 337.8 273 60.1
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 5.6e-90 335.1 280 61.8
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 9.6e-90 334.3 282 58.5
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.1e-89 333.2 285 60.0
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 3.6e-89 332.4 296 57.8
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 6.2e-89 331.6 297 58.9
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 6.2e-89 331.6 275 57.5
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 8.1e-89 331.3 263 62.0
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 1.4e-88 330.5 238 66.8
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.4e-88 330.5 247 64.0
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.8e-88 330.1 273 61.5
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 3.1e-88 329.3 268 61.2
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 4.0e-88 328.9 266 58.6
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 5.3e-88 328.6 230 67.0
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 5.3e-88 328.6 266 58.6
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 6.9e-88 328.2 276 59.1
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 1.2e-87 327.4 263 60.1
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.2e-87 327.4 258 59.3
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.2e-87 327.4 283 56.5
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 2.0e-87 326.6 271 57.9
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 3.4e-87 325.9 268 59.7
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.5e-87 325.5 269 57.2
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 1.7e-86 323.6 286 56.3
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.7e-86 323.6 296 56.1
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.7e-86 323.6 265 58.9
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 2.2e-86 323.2 243 64.6
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 2.2e-86 323.2 285 58.6
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 2.9e-86 322.8 270 59.3
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 2.9e-86 322.8 268 58.6
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 2.9e-86 322.8 266 58.3
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 8.4e-86 321.2 292 55.1
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 1.1e-85 320.9 290 56.9
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 2.4e-85 319.7 258 60.1
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.2e-84 317.4 265 58.9
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.1e-84 316.6 286 54.9
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 2.7e-84 316.2 264 58.3
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 3.5e-84 315.8 270 59.3
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 7.9e-84 314.7 268 57.8
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 7.9e-84 314.7 271 57.9
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 2.5e-82 309.7 267 56.9
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.3e-82 309.3 291 52.6
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 9.6e-82 307.8 243 63.8
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 2.1e-81 306.6 265 57.4
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.1e-80 304.3 296 53.7
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 7.6e-79 298.1 279 53.8
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.7e-78 297.0 270 55.9
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 2.9e-78 296.2 272 54.8
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 3.8e-78 295.8 286 51.0
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.2e-76 290.8 270 54.4
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 7.9e-76 288.1 257 54.5
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 6.3e-73 278.5 261 51.3
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 8.2e-73 278.1 286 49.7
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.4e-72 277.3 288 50.0
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.4e-72 277.3 286 49.0
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-72 276.6 288 49.7
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 2.4e-72 276.6 288 49.7
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 1.2e-71 274.2 287 48.8
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.5e-71 273.9 291 48.1
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 2.6e-71 273.1 296 49.0
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 1.0e-70 271.2 299 48.2
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.3e-70 270.8 295 48.5
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.2e-70 270.0 287 48.8
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 5.0e-70 268.9 290 48.3
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.1e-69 267.7 286 47.2
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 2.5e-69 266.5 286 47.2
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 9.3e-69 264.6 289 47.8
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-67 260.8 290 49.0
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.8e-67 260.4 235 56.2
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 3.9e-67 259.2 261 49.8
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 2.8e-65 253.1 262 49.2
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 5.3e-64 248.8 271 44.3
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 6.9e-64 248.4 238 53.8
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.7e-62 243.8 296 44.6
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 1.1e-58 231.1 318 42.1
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.3e-58 229.6 221 54.8
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 5.5e-53 212.2 266 46.2
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.6e-52 209.5 231 46.8
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.6e-47 194.1 199 49.7
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 1.5e-45 187.6 264 39.0
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.2e-44 184.5 163 50.9
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.0e-43 181.4 212 44.3
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.6e-39 167.5 230 41.7
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 5.9e-39 165.6 201 44.8
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 8.5e-38 161.8 174 47.1
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 7.2e-37 158.7 201 44.8
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 9.4e-37 158.3 218 44.0
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-35 154.1 178 47.8
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 2.3e-35 153.7 270 39.3
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 6.8e-35 152.1 170 47.6
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 3.4e-34 149.8 170 48.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 7.5e-34 148.7 170 46.5
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-33 147.9 241 39.4
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.8e-32 144.1 235 40.4
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 2.7e-31 140.2 143 50.3
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.2e-30 137.1 140 47.9
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.1e-28 130.6 143 49.7
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.3e-27 127.1 280 33.6
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 3.0e-27 126.7 171 43.3
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 2.2e-25 120.6 201 38.3
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 2.2e-25 120.6 201 38.3
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.7e-23 113.6 89 61.8
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 8.6e-22 108.6 147 40.8
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 2.5e-21 107.1 170 37.6
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 8.0e-20 102.1 93 54.8
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 7.0e-16 89.0 66 60.6
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 7.0e-16 89.0 66 60.6
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.6e-15 87.8 155 38.7
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 8.9e-11 72.0 75 53.3
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.0e-06 57.0 99 40.4


User provided reference genes

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