Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0677400 Oryza sativa ssp. japonica HOM05D005742 ORTHO05D001888 1.9e-150 536.6 456 100.0
Zm00001eb028480 Zea mays HOM05D005742 ORTHO05D001888 1.4e-28 131.7 151 48.3
Zm00001eb136950 Zea mays HOM05D005742 ORTHO05D001888 7.7e-27 125.9 151 47.0
Os12g0561500 Oryza sativa ssp. japonica HOM05D005742 ORTHO05D001888 8.5e-26 122.5 165 44.8
Manes.01G228700 Manihot esculenta HOM05D008182 ORTHO05D001888 9.4e-17 92.4 156 37.8
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 3.6e-16 90.5 167 32.9
FvH4_4g19570 Fragaria vesca HOM05D005742 ORTHO05D001888 1.0e-15 89.0 161 35.4
FAN12G0951 Fragaria x ananassa HOM05D001258 ORTHO05D000158 1.0e-15 89.0 177 33.9
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 8.8e-15 85.9 167 35.3
TWI53G1179 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 1.2e-14 85.5 153 35.9
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.5e-14 85.1 180 33.9
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 2.6e-14 84.3 151 37.1
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 3.4e-14 84.0 172 36.0
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 3.4e-14 84.0 176 35.2
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 5.7e-14 83.2 155 36.8
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 5.7e-14 83.2 155 36.8
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 1.7e-13 81.6 173 34.7
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 1.7e-13 81.6 155 36.8
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.7e-13 81.6 165 32.1
CiPaw.02G075500 Carya illinoinensis HOM05D005742 ORTHO05D001888 2.2e-13 81.3 152 34.2
TWI09G1381 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 2.2e-13 81.3 153 34.0
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 2.8e-13 80.9 155 35.5
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 2.8e-13 80.9 155 35.5
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 3.7e-13 80.5 151 35.1
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 4.8e-13 80.1 154 38.3
Potri.014G119200 Populus trichocarpa HOM05D008182 ORTHO05D001888 6.3e-13 79.7 153 34.0
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 6.3e-13 79.7 172 33.1
Sabra14G0088400 Salix brachista HOM05D008182 ORTHO05D001888 1.4e-12 78.6 145 34.5
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 1.8e-12 78.2 171 33.9
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 2.4e-12 77.8 166 34.9
HPP92_027565 Vanilla planifolia HOM05D005742 ORTHO05D001888 5.4e-12 76.6 152 35.5
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 7.0e-12 76.3 160 33.1
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 1.6e-11 75.1 155 34.2
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 2.0e-11 74.7 151 35.8
HPP92_017245 Vanilla planifolia HOM05D005742 ORTHO05D001888 2.7e-11 74.3 152 34.9
CANSAT56G1763 Cannabis sativa HOM05D001445 ORTHO05D001261 4.5e-11 73.6 151 30.5
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 4.5e-11 73.6 151 35.1
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 1.0e-10 72.4 148 30.4
ATR0796G165 Amborella trichopoda HOM05D005742 ORTHO05D001888 1.7e-10 71.6 150 30.7
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 3.8e-10 70.5 174 30.5
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 5.0e-10 70.1 178 30.3
MBI18_g17308_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 5.0e-10 70.1 151 29.8
THA.LOC104817455 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 8.6e-10 69.3 156 28.2
CANSAT56G2517 Cannabis sativa HOM05D001445 ORTHO05D003404 1.1e-09 68.9 151 29.8
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 1.1e-09 68.9 145 29.7
Nn3g21713 Nelumbo nucifera HOM05D005742 ORTHO05D001888 1.5e-09 68.6 155 29.0
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 1.5e-09 68.6 167 30.5
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 1.9e-09 68.2 145 28.3
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 1.9e-09 68.2 166 31.9
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 1.9e-09 68.2 151 31.1
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 2.5e-09 67.8 150 32.7
AT1G02550 Arabidopsis thaliana HOM05D008182 ORTHO05D001888 2.5e-09 67.8 153 30.1
CARHR001860 Cardamine hirsuta HOM05D008182 ORTHO05D001888 2.5e-09 67.8 153 30.1
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 2.5e-09 67.8 157 35.0
Potri.002G195000 Populus trichocarpa HOM05D008182 ORTHO05D001888 3.3e-09 67.4 169 28.4
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 7.2e-09 66.2 145 29.7
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 7.2e-09 66.2 178 29.8
Thecc.04G299300 Theobroma cacao HOM05D005742 ORTHO05D001888 7.2e-09 66.2 153 28.1
Aa31LG1G9980 Aethionema arabicum HOM05D008182 ORTHO05D001888 9.5e-09 65.9 155 27.1
Carub.0001s0161 Capsella rubella HOM05D008182 ORTHO05D001888 9.5e-09 65.9 153 29.4
Lj4g0015413 Lotus japonicus HOM05D001445 ORTHO05D003404 9.5e-09 65.9 159 25.2
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 1.2e-08 65.5 146 28.8
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 1.6e-08 65.1 174 27.0
Manes.09G173500 Manihot esculenta HOM05D003556 ORTHO05D003404 2.1e-08 64.7 162 29.0
AL1G11880 Arabidopsis lyrata HOM05D008182 ORTHO05D001888 2.8e-08 64.3 153 30.1
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.8e-08 64.3 164 30.5
TWI75G0476 Tripterygium wilfordii HOM05D008182 ORTHO05D001888 2.8e-08 64.3 151 30.5
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 3.6e-08 63.9 146 30.1
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 3.6e-08 63.9 151 29.8
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 3.6e-08 63.9 151 29.8
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 4.7e-08 63.5 159 26.4
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 4.7e-08 63.5 148 31.8
Manes.08G115700 Manihot esculenta HOM05D001445 ORTHO05D003404 6.1e-08 63.2 159 26.4
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 8.0e-08 62.8 152 31.6
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 8.0e-08 62.8 145 29.0
AL4G46900 Arabidopsis lyrata HOM05D026554 ORTHO05D001888 1.0e-07 62.4 156 26.3
Atru.chr4.3013 Acer truncatum HOM05D005742 ORTHO05D001888 1.4e-07 62.0 142 32.4
Carub.0004s3006 Capsella rubella HOM05D026554 ORTHO05D001888 1.4e-07 62.0 157 27.4
CARHR142730 Cardamine hirsuta HOM05D026554 ORTHO05D001888 1.4e-07 62.0 156 25.0
Dinv15186 Davidia involucrata HOM05D001340 ORTHO05D002318 1.8e-07 61.6 152 29.6
AT2G47340 Arabidopsis thaliana HOM05D026554 ORTHO05D001888 3.0e-07 60.8 158 26.6
CSS0011089 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000095 3.0e-07 60.8 164 26.2
CSS0025131 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000095 3.0e-07 60.8 164 26.2
Duzib151G0239 Durio zibethinus HOM05D005742 ORTHO05D001888 3.0e-07 60.8 158 27.8
Manes.08G115800 Manihot esculenta HOM05D001445 ORTHO05D003404 5.2e-07 60.1 159 25.8
THA.LOC104825958 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 5.2e-07 60.1 145 29.7
Migut.G00051 Erythranthe guttata HOM05D005742 ORTHO05D001888 8.9e-07 59.3 153 30.7
Gohir.A08G040400 Gossypium hirsutum HOM05D008182 ORTHO05D001888 8.9e-07 59.3 148 30.4
Gohir.D08G050500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 8.9e-07 59.3 151 31.8
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 8.9e-07 59.3 149 24.8
Glyma.17G044900 Glycine max HOM05D001445 ORTHO05D003404 1.2e-06 58.9 160 25.6
Gohir.A02G054001 Gossypium hirsutum HOM05D005742 ORTHO05D001888 1.2e-06 58.9 174 28.2
VMungo0251G1280 Vigna mungo HOM05D001445 ORTHO05D001261 1.2e-06 58.9 114 32.5
CSS0047493 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000095 1.5e-06 58.5 164 25.6
Cpa.g.sc18.59 Carica papaya HOM05D008182 ORTHO05D001888 1.5e-06 58.5 151 26.5
Gohir.D06G185300 Gossypium hirsutum HOM05D000036 ORTHO05D002265 2.6e-06 57.8 161 32.9
Os08g0450200 Oryza sativa ssp. japonica HOM05D000036 ORTHO05D000441 2.6e-06 57.8 166 28.3
Sopen01g036780 Solanum pennellii HOM05D000036 ORTHO05D000095 2.6e-06 57.8 146 25.3
PGSC0003DMG400025967 Solanum tuberosum HOM05D000036 ORTHO05D000095 2.6e-06 57.8 147 26.5
AUR62025614 Chenopodium quinoa HOM05D000036 ORTHO05D000095 4.4e-06 57.0 154 27.3
AUR62043502 Chenopodium quinoa HOM05D000036 ORTHO05D000095 4.4e-06 57.0 154 27.3
QL03p019019 Quercus lobata HOM05D003556 ORTHO05D003404 4.4e-06 57.0 147 24.5
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 5.7e-06 56.6 163 24.5
Nitab4.5_0000785g0060 Nicotiana tabacum HOM05D008788 ORTHO05D012497 5.7e-06 56.6 158 29.7
Oeu040725.1 Olea europaea HOM05D000036 ORTHO05D000095 5.7e-06 56.6 150 30.7
PGR042G2990 Punica granatum HOM05D000036 ORTHO05D000095 5.7e-06 56.6 144 29.2
QL03p019662 Quercus lobata HOM05D003556 ORTHO05D003404 5.7e-06 56.6 147 24.5
QL03p019667 Quercus lobata HOM05D003556 ORTHO05D003404 5.7e-06 56.6 147 24.5
QL08p042930 Quercus lobata HOM05D003556 ORTHO05D003404 5.7e-06 56.6 147 24.5
RcHm_v2.0_Chr7g0207981 Rosa chinensis HOM05D001445 ORTHO05D001261 5.7e-06 56.6 156 28.2
CsaV3_1G038650 Cucumis sativus L. HOM05D003556 ORTHO05D003404 7.5e-06 56.2 153 20.9
Manes.15G171900 Manihot esculenta HOM05D001445 ORTHO05D001261 7.5e-06 56.2 135 27.4
Solyc01g091050.4 Solanum lycopersicum HOM05D000036 ORTHO05D000095 7.5e-06 56.2 146 25.3
VMungo1215G2168 Vigna mungo HOM05D001445 ORTHO05D003404 9.8e-06 55.8 159 27.7


User provided reference genes

Program Settings