Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.5e-68 262.7 129 100.0
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.8e-37 159.5 97 86.6
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.1e-34 148.3 92 82.6
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 6.6e-24 114.4 85 65.9
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 9.5e-23 110.5 89 57.3
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 8.0e-22 107.5 91 57.1
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.0e-21 107.1 92 57.6
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 2.3e-21 105.9 91 57.1
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 4.0e-21 105.1 112 47.3
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 4.0e-21 105.1 112 47.3
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 4.0e-21 105.1 112 47.3
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 4.0e-21 105.1 112 47.3
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 4.0e-21 105.1 112 47.3
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 4.0e-21 105.1 91 57.1
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 5.2e-21 104.8 112 47.3
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 5.2e-21 104.8 112 46.4
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 5.2e-21 104.8 91 56.0
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 6.8e-21 104.4 91 56.0
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.2e-20 103.6 112 47.3
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 2.6e-20 102.4 84 57.1
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 4.4e-20 101.7 94 53.2
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 7.5e-20 100.9 86 57.0
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 9.8e-20 100.5 86 55.8
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 9.8e-20 100.5 91 53.8
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 9.8e-20 100.5 91 53.8
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 9.8e-20 100.5 92 52.2
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.3e-19 100.1 94 53.2
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.3e-19 100.1 91 53.8
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 2.2e-19 99.4 92 55.4
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 2.2e-19 99.4 91 51.6
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 3.7e-19 98.6 93 52.7
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 3.7e-19 98.6 92 51.1
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 4.9e-19 98.2 91 51.6
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 6.4e-19 97.8 91 50.5
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 6.4e-19 97.8 94 48.9
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 6.4e-19 97.8 91 53.8
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 6.4e-19 97.8 94 50.0
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 6.4e-19 97.8 92 54.3
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 6.4e-19 97.8 94 50.0
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 8.3e-19 97.4 91 50.5
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 8.3e-19 97.4 93 49.5
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 8.3e-19 97.4 91 53.8
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 8.3e-19 97.4 91 53.8
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 8.3e-19 97.4 93 50.5
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 8.3e-19 97.4 92 54.3
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 8.3e-19 97.4 91 53.8
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.1e-18 97.1 93 49.5
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.4e-18 96.7 91 50.5
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.4e-18 96.7 110 42.7
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 1.4e-18 96.7 91 50.5
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 1.4e-18 96.7 91 54.9
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 1.4e-18 96.7 91 56.0
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.4e-18 96.7 91 53.8
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.1e-18 95.1 91 49.5
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 4.1e-18 95.1 92 50.0
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 5.4e-18 94.7 91 50.5
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 5.4e-18 94.7 92 50.0
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 5.4e-18 94.7 91 51.6
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 7.0e-18 94.4 91 48.4
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 7.0e-18 94.4 91 50.5
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 7.0e-18 94.4 91 50.5
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.0e-18 94.4 91 51.6
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 7.0e-18 94.4 91 50.5
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 9.2e-18 94.0 91 48.4
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 9.2e-18 94.0 92 51.1
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.2e-17 93.6 92 52.2
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.2e-17 93.6 92 51.1
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 1.2e-17 93.6 91 50.5
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.6e-17 93.2 92 47.8
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.6e-17 93.2 91 49.5
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.6e-17 93.2 91 48.4
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.6e-17 93.2 91 48.4
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.6e-17 93.2 91 50.5
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.0e-17 92.8 91 51.6
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 2.0e-17 92.8 96 51.0
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 2.0e-17 92.8 92 52.2
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.7e-17 92.4 91 50.5
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.7e-17 92.4 91 49.5
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 2.7e-17 92.4 99 48.5
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.5e-17 92.0 92 51.1
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.5e-17 92.0 72 61.1
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 3.5e-17 92.0 91 50.5
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 4.6e-17 91.7 91 50.5
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.6e-17 91.7 91 50.5
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 4.6e-17 91.7 91 51.6
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 5.9e-17 91.3 92 50.0
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 5.9e-17 91.3 91 48.4
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 5.9e-17 91.3 91 49.5
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.9e-17 91.3 91 53.8
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 7.8e-17 90.9 91 48.4
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 7.8e-17 90.9 91 48.4
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 7.8e-17 90.9 91 48.4
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 7.8e-17 90.9 84 52.4
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 7.8e-17 90.9 91 48.4
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.0e-16 90.5 90 50.0
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 1.0e-16 90.5 91 47.3
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.0e-16 90.5 92 47.8
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.3e-16 90.1 84 52.4
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.7e-16 89.7 91 47.3
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.7e-16 89.7 91 50.5
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.7e-16 89.7 89 48.3
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.7e-16 89.7 92 48.9
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 3.0e-16 89.0 98 44.9
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 3.9e-16 88.6 96 47.9
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 5.0e-16 88.2 91 47.3
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 6.6e-16 87.8 84 51.2
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 8.6e-16 87.4 84 50.0
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.5e-15 86.7 90 47.8
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.9e-15 86.3 91 49.5
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.9e-15 86.3 91 49.5
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 3.3e-15 85.5 86 47.7
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 4.3e-15 85.1 89 47.2
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.1e-13 79.0 131 35.9
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.6e-09 66.6 86 45.3
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.0e-08 63.9 92 37.0
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 3.0e-08 62.4 67 44.8
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 8.6e-08 60.8 73 42.5
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 4.7e-06 55.1 86 37.2


User provided reference genes

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