Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 3.7e-143 511.5 260 100.0
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 6.0e-125 451.1 261 88.9
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 6.0e-125 451.1 261 88.9
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.2e-122 443.4 261 86.2
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 2.1e-122 442.6 261 84.7
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.4e-121 439.9 261 84.3
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.4e-121 439.9 261 84.3
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.4e-121 439.9 261 85.4
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 1.4e-121 439.9 260 85.4
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 1.8e-121 439.5 260 84.6
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 1.8e-121 439.5 260 84.6
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 2.3e-121 439.1 259 84.2
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.3e-121 439.1 261 83.9
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 2.3e-121 439.1 260 84.6
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 4.0e-121 438.3 259 84.9
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 4.0e-121 438.3 259 84.9
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 4.0e-121 438.3 261 84.7
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 6.8e-121 437.6 260 84.2
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 8.9e-121 437.2 260 85.8
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.2e-120 436.8 261 84.7
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 1.2e-120 436.8 261 85.1
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 2.6e-120 435.6 261 84.7
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 2.6e-120 435.6 261 84.7
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 2.6e-120 435.6 261 84.7
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 2.6e-120 435.6 261 84.7
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.6e-120 435.6 261 84.7
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 3.4e-120 435.3 261 84.7
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 4.4e-120 434.9 261 84.7
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 4.4e-120 434.9 261 83.9
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 5.8e-120 434.5 261 83.5
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 5.8e-120 434.5 261 85.1
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 5.8e-120 434.5 261 84.3
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 7.5e-120 434.1 261 84.3
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 7.5e-120 434.1 261 84.3
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 9.8e-120 433.7 261 84.7
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 9.8e-120 433.7 261 85.1
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 9.8e-120 433.7 261 83.5
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 9.8e-120 433.7 261 83.9
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 1.3e-119 433.3 261 83.5
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.3e-119 433.3 261 83.5
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.3e-119 433.3 261 83.9
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 2.2e-119 432.6 261 83.9
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.2e-119 432.6 261 83.9
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 2.2e-119 432.6 260 84.2
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 2.9e-119 432.2 261 83.1
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 2.9e-119 432.2 261 83.9
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.9e-119 432.2 261 84.3
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.9e-119 432.2 261 84.3
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 3.7e-119 431.8 261 83.9
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 3.7e-119 431.8 261 83.9
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 3.7e-119 431.8 261 84.3
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 3.7e-119 431.8 261 83.1
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 4.9e-119 431.4 258 84.9
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 4.9e-119 431.4 261 83.5
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 4.9e-119 431.4 261 83.9
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 4.9e-119 431.4 261 83.9
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 4.9e-119 431.4 261 83.5
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 6.4e-119 431.0 261 83.5
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 6.4e-119 431.0 260 83.5
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 6.4e-119 431.0 261 82.4
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 6.4e-119 431.0 261 83.9
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 6.4e-119 431.0 261 83.5
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 8.3e-119 430.6 261 83.9
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 8.3e-119 430.6 261 83.5
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.1e-118 430.3 261 83.1
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.1e-118 430.3 261 83.5
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.1e-118 430.3 261 83.5
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.1e-118 430.3 261 83.5
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-118 430.3 261 83.5
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.1e-118 430.3 261 82.4
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 1.1e-118 430.3 261 83.9
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.1e-118 430.3 261 83.9
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.4e-118 429.9 261 83.1
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 1.4e-118 429.9 261 82.8
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.4e-118 429.9 265 82.3
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.4e-118 429.9 256 85.2
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.9e-118 429.5 261 83.1
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.9e-118 429.5 261 82.8
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.9e-118 429.5 261 82.0
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 1.9e-118 429.5 260 83.1
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 2.4e-118 429.1 261 83.1
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 2.4e-118 429.1 261 83.1
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.4e-118 429.1 261 82.8
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 3.2e-118 428.7 261 83.1
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 5.4e-118 427.9 261 83.9
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 5.4e-118 427.9 261 82.4
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 7.1e-118 427.6 261 83.1
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 7.1e-118 427.6 261 83.1
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 7.1e-118 427.6 261 82.8
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 7.1e-118 427.6 261 83.1
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 7.1e-118 427.6 261 83.1
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 7.1e-118 427.6 261 82.4
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 7.1e-118 427.6 261 83.1
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 9.2e-118 427.2 261 81.6
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 9.2e-118 427.2 261 82.8
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.2e-118 427.2 261 82.0
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 9.2e-118 427.2 261 82.0
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.6e-117 426.4 261 83.1
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.6e-117 426.4 261 83.1
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.6e-117 426.4 261 82.0
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 1.6e-117 426.4 261 82.8
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.1e-117 426.0 261 82.4
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 2.7e-117 425.6 261 82.4
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 3.5e-117 425.2 261 81.6
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 4.6e-117 424.9 261 82.4
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 6.0e-117 424.5 261 82.4
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 6.0e-117 424.5 261 82.0
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 1.3e-116 423.3 261 82.0
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 1.7e-116 422.9 261 82.4
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 2.3e-116 422.5 261 82.0
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 3.0e-116 422.2 260 81.9
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 3.0e-116 422.2 264 81.8
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 3.9e-116 421.8 261 81.2
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 8.6e-116 420.6 261 80.8
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 8.6e-116 420.6 261 81.6
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 8.6e-116 420.6 261 81.2
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.1e-115 420.2 256 82.4
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.5e-115 419.9 276 79.3
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 1.9e-115 419.5 261 82.0
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.9e-115 419.5 261 81.6
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 4.3e-115 418.3 261 80.1
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 4.3e-115 418.3 261 79.7
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 5.6e-115 417.9 261 81.6
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 9.5e-115 417.2 259 82.2
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 1.6e-114 416.4 261 80.1
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 2.1e-114 416.0 269 79.6
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 2.1e-114 416.0 285 76.1
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 8.1e-114 414.1 261 81.2
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 1.1e-113 413.7 261 79.7
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 8.9e-113 410.6 277 77.6
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 4.9e-111 404.8 261 75.9
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 9.2e-110 400.6 261 77.0
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 3.9e-108 395.2 240 83.8
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 6.6e-108 394.4 261 77.8
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 1.6e-106 389.8 261 75.1
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.6e-106 388.7 241 82.2
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-105 387.1 241 81.7
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 7.1e-102 374.4 212 86.8
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.7e-100 369.8 261 75.5
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 3.9e-100 368.6 266 73.3
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.6e-98 363.2 261 73.2
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 2.4e-97 359.4 201 86.6
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.0e-96 356.3 309 64.1
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 3.4e-96 355.5 222 81.5
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 1.4e-94 350.1 195 86.7
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.2e-94 349.0 337 58.2
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 4.2e-94 348.6 261 71.3
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 6.0e-93 344.7 240 74.2
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 1.1e-91 340.5 259 64.5
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 1.5e-91 340.1 249 71.5
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.6e-90 336.7 200 84.5
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 4.3e-83 312.0 256 68.0
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-82 310.5 177 85.3
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 6.2e-82 308.1 161 91.3
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 1.0e-68 264.2 230 60.4
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 3.7e-66 255.8 240 60.8
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.3e-57 225.3 113 92.9
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 4.7e-53 212.2 143 78.3
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.0e-52 211.1 142 78.2
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.0e-47 194.5 135 79.3
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 3.8e-47 192.6 98 90.8
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 3.8e-39 166.0 108 75.9
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 2.1e-37 160.2 108 75.0
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 3.6e-37 159.5 196 49.5
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 6.8e-36 155.2 271 43.2
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.5e-35 154.1 92 80.4
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 2.6e-35 153.3 135 60.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 4.5e-32 142.5 197 47.7
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 8.9e-28 128.3 100 72.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 2.8e-26 123.2 98 67.3
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 2.3e-23 113.6 92 64.1
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.2e-19 101.3 111 56.8
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 3.6e-13 79.7 64 68.8
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 1.4e-09 67.8 81 53.1
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 2.1e-08 63.9 58 63.8
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 5.0e-07 59.3 59 55.9


User provided reference genes

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