Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 2.8e-255 884.8 445 100.0
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 5.6e-107 392.1 423 51.5
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 2.4e-102 376.7 458 47.4
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 2.1e-101 373.6 459 47.1
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 2.7e-101 373.2 468 48.1
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 3.5e-101 372.9 477 46.1
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.0e-100 371.3 473 46.9
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 5.6e-99 365.5 443 46.7
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 7.4e-99 365.2 469 46.1
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 1.3e-98 364.4 489 46.6
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.3e-98 364.4 443 47.9
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 1.6e-98 364.0 439 45.8
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.8e-98 363.2 465 46.5
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 3.7e-98 362.8 436 47.5
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 6.2e-98 362.1 466 46.8
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 1.4e-97 360.9 506 45.5
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 2.4e-97 360.1 469 46.3
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 2.6e-96 356.7 440 48.0
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 2.6e-96 356.7 486 46.3
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 3.4e-96 356.3 460 47.6
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.2e-95 353.6 477 45.9
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.9e-95 353.2 451 46.8
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.9e-95 353.2 458 46.9
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 6.5e-95 352.1 449 47.0
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.1e-94 351.3 436 46.1
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.1e-94 351.3 436 46.1
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.2e-94 349.7 448 48.9
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 9.3e-94 348.2 476 45.0
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.2e-93 347.8 451 47.0
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.0e-92 344.7 489 43.1
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 3.9e-92 342.8 428 46.5
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 8.7e-92 341.7 465 44.3
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.5e-91 340.9 447 47.4
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 2.5e-91 340.1 453 43.3
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 5.7e-91 339.0 436 47.5
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 9.6e-91 338.2 448 46.2
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 9.6e-91 338.2 472 44.3
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 3.7e-90 336.3 457 43.3
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 3.7e-90 336.3 453 43.7
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 4.8e-90 335.9 444 42.1
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.2e-88 331.3 457 47.7
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 3.4e-88 329.7 453 41.9
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 4.5e-88 329.3 486 44.0
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 5.0e-87 325.9 423 48.5
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 6.5e-87 325.5 476 44.3
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 2.1e-85 320.5 473 45.2
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.5e-85 319.7 419 47.0
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 7.9e-85 318.5 444 45.9
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.1e-83 314.7 480 43.8
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 2.2e-82 310.5 445 46.3
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 3.4e-80 303.1 506 40.9
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 8.5e-79 298.5 483 42.0
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 4.2e-78 296.2 434 41.7
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.0e-76 291.6 483 42.7
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.3e-74 284.6 449 41.4
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.7e-74 283.1 397 45.1
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.7e-69 266.2 427 40.5
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.4e-68 264.6 393 40.7
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 3.0e-68 263.5 427 39.6
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.9e-68 263.1 448 35.9
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 2.2e-66 257.3 436 37.6
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.2e-66 257.3 438 38.4
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 5.9e-64 249.2 418 38.0
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.2e-61 241.5 425 36.9
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.6e-61 241.1 416 37.3
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 2.7e-61 240.4 410 34.4
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 1.0e-60 238.4 410 35.6
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 5.2e-60 236.1 411 34.5
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 5.2e-60 236.1 411 34.5
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 3.3e-59 233.4 413 38.5
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 5.7e-59 232.6 411 34.3
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.4e-59 232.3 411 34.5
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 9.7e-59 231.9 411 34.3
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 6.3e-58 229.2 409 35.7
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.1e-57 228.4 405 39.5
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.4e-57 228.0 375 38.9
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.4e-57 228.0 411 34.1
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 7.0e-57 225.7 431 36.7
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.0e-56 224.2 431 36.0
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.7e-55 221.1 423 34.5
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 5.0e-55 219.5 418 35.6
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 9.4e-54 215.3 418 35.9
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 3.6e-53 213.4 442 31.7
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 2.0e-51 207.6 420 34.8
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 2.6e-51 207.2 439 32.3
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 4.4e-51 206.5 352 40.1
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 5.7e-51 206.1 439 34.6
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.7e-50 204.5 424 33.7
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.8e-50 203.8 250 45.2
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 6.3e-50 202.6 372 35.8
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.8e-49 201.1 378 37.6
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.0e-47 195.3 337 36.2
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 4.2e-46 189.9 402 35.1
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 5.5e-46 189.5 356 38.2
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.6e-45 186.8 381 34.6
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 1.8e-44 184.5 431 32.5
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 6.8e-44 182.6 343 37.3
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.2e-43 181.8 328 41.5
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 5.7e-43 179.5 322 37.0
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.7e-43 179.5 339 37.2
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 7.5e-43 179.1 342 33.9
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 2.8e-42 177.2 352 31.8
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.7e-42 176.8 308 36.4
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 6.3e-42 176.0 411 31.1
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.4e-41 174.9 358 34.6
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 1.2e-40 171.8 364 31.9
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.6e-40 171.4 366 32.0
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.6e-40 171.4 422 28.9
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.5e-40 169.9 359 33.1
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.0e-39 168.7 145 59.3
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 8.6e-39 165.6 364 33.8
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 2.3e-36 157.5 426 30.5
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 8.3e-34 149.1 370 32.4
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.8e-33 147.9 127 58.3
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.8e-33 147.9 365 31.8
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.8e-33 147.9 346 32.9
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 5.4e-33 146.4 220 44.1
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 1.2e-32 145.2 277 36.1
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 1.2e-32 145.2 277 36.1
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.6e-32 144.8 368 31.5
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.3e-31 141.7 273 32.6
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 2.9e-31 140.6 159 48.4
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 6.6e-31 139.4 104 61.5
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 9.5e-30 135.6 276 33.7
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 2.8e-29 134.0 175 42.9
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 4.7e-29 133.3 133 54.9
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 6.8e-28 129.4 149 51.7
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.5e-27 128.3 404 29.2
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 2.0e-27 127.9 149 51.0
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 3.4e-27 127.1 145 46.9
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 4.4e-27 126.7 261 37.5
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.9e-26 123.2 401 29.2
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 2.4e-25 120.9 277 30.0
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 6.0e-24 116.3 252 34.9
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 5.6e-22 109.8 276 30.1
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 5.2e-20 103.2 170 37.1
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 7.5e-19 99.4 152 36.8
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.1e-17 92.8 130 35.4
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 6.6e-15 86.3 110 40.9
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.6e-13 81.6 111 41.4
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.1e-12 79.0 119 41.2
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.5e-11 75.1 116 44.0
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 2.0e-11 74.7 61 52.5
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 4.4e-11 73.6 67 55.2


User provided reference genes

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