Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0682900 Oryza sativa ssp. japonica HOM05D006759 ORTHO05D008633 1.0e-176 623.2 303 100.0
Zm00001eb225360 Zea mays HOM05D006759 ORTHO05D008633 1.2e-145 520.0 302 85.1
Dinv17853 Davidia involucrata HOM05D006759 ORTHO05D008633 5.5e-114 414.8 267 72.3
CSS0000245 Camellia sinensis var. sinensis HOM05D006759 ORTHO05D008633 1.6e-113 413.3 280 70.4
CSS0002106 Camellia sinensis var. sinensis HOM05D006759 ORTHO05D008633 6.1e-113 411.4 280 70.0
QL05p077196 Quercus lobata HOM05D006759 ORTHO05D008633 6.1e-113 411.4 278 70.1
QL93p0073_1304 Quercus lobata HOM05D006759 ORTHO05D008633 8.0e-113 411.0 278 70.1
Cfa016405 Carpinus fangiana HOM05D006759 ORTHO05D008633 4.0e-112 408.7 280 69.3
Rhsim02G0115500 Rhododendron simsii HOM05D006759 ORTHO05D008633 6.7e-112 407.9 278 70.5
CANSAT56G4156 Cannabis sativa HOM05D006759 ORTHO05D008633 1.2e-111 407.1 280 69.3
MD10G1311200 Malus domestica HOM05D006759 ORTHO05D008633 2.6e-111 406.0 280 70.7
Eucgr.D00856 Eucalyptus grandis HOM05D006759 ORTHO05D008633 3.3e-111 405.6 280 70.0
MELO3C002513.2 Cucumis melo HOM05D006759 ORTHO05D008633 4.4e-111 405.2 279 70.3
Ciclev10016144m.g Citrus clementina HOM05D006759 ORTHO05D008633 5.7e-111 404.8 276 68.1
CsaV3_1G011360 Cucumis sativus L. HOM05D006759 ORTHO05D008633 5.7e-111 404.8 279 70.6
CiPaw.09G080000 Carya illinoinensis HOM05D006759 ORTHO05D008633 1.3e-110 403.7 282 68.8
TWI38G2336 Tripterygium wilfordii HOM05D006759 ORTHO05D008633 1.7e-110 403.3 282 67.4
Prupe.4G029700 Prunus persica HOM05D006759 ORTHO05D008633 2.2e-110 402.9 260 73.8
vmacro15843 Vaccinium macrocarpon HOM05D006759 ORTHO05D008633 2.2e-110 402.9 280 69.6
PSO170G0831 Papaver somniferum HOM05D006759 ORTHO05D008633 2.8e-110 402.5 284 70.4
ClCG03G005150 Citrullus lanatus HOM05D006759 ORTHO05D008633 3.7e-110 402.1 296 67.6
Haze_06682 Corylus avellana HOM05D006759 ORTHO05D008633 6.3e-110 401.4 279 68.1
PGR004G2806 Punica granatum HOM05D006759 ORTHO05D008633 8.2e-110 401.0 261 72.0
TAR626G1069 Trochodendron aralioides HOM05D006759 ORTHO05D008633 1.1e-109 400.6 261 73.9
MBI02_g02472_MAGBIO Magnolia biondii HOM05D006759 ORTHO05D008633 1.4e-109 400.2 323 62.8
Nitab4.5_0006475g0040 Nicotiana tabacum HOM05D006759 ORTHO05D008633 1.4e-109 400.2 303 64.7
MSTRG.15955 Avicennia marina HOM05D006759 ORTHO05D008633 3.1e-109 399.1 280 68.6
SGA_v2.0_scaffold7G03895 Striga asiatica HOM05D006759 ORTHO05D008633 3.1e-109 399.1 280 68.2
RcHm_v2.0_Chr5g0004601 Rosa chinensis HOM05D006759 ORTHO05D008633 4.1e-109 398.7 280 69.6
SalBow8G2756 Salvia bowleyana HOM05D006759 ORTHO05D008633 7.0e-109 397.9 261 71.3
Nn1g03732 Nelumbo nucifera HOM05D006759 ORTHO05D008633 1.2e-108 397.1 261 72.8
Gorai.011G019000 Gossypium raimondii HOM05D006759 ORTHO05D008633 1.6e-108 396.7 280 67.9
Nitab4.5_0002345g0080 Nicotiana tabacum HOM05D006759 ORTHO05D008633 1.6e-108 396.7 303 63.7
Cpa.g.sc81.5 Carica papaya HOM05D006759 ORTHO05D008633 2.0e-108 396.4 282 68.1
Migut.M01261 Erythranthe guttata HOM05D006759 ORTHO05D008633 3.5e-108 395.6 280 66.4
FAN21G1217 Fragaria x ananassa HOM05D006759 ORTHO05D008633 3.5e-108 395.6 261 72.0
FAN21G3610 Fragaria x ananassa HOM05D006759 ORTHO05D008633 3.5e-108 395.6 261 72.0
Peaxi162Scf00082g01114 Petunia axillaris HOM05D006759 ORTHO05D008633 3.5e-108 395.6 278 66.5
FvH4_3g02960 Fragaria vesca HOM05D006759 ORTHO05D008633 4.5e-108 395.2 280 69.3
Potri.011G031600 Populus trichocarpa HOM05D006759 ORTHO05D008633 1.3e-107 393.7 280 66.8
Sc05g0008410 Simmondsia chinensis HOM05D006759 ORTHO05D008633 1.7e-107 393.3 261 70.1
Lalb_Chr05g0218011 Lupinus albus HOM05D006759 ORTHO05D008633 3.8e-107 392.1 280 66.1
FAN25G0528 Fragaria x ananassa HOM05D006759 ORTHO05D008633 8.5e-107 391.0 261 71.3
Gohir.A10G017000 Gossypium hirsutum HOM05D006759 ORTHO05D008633 8.5e-107 391.0 280 66.4
Lj4g0006967 Lotus japonicus HOM05D006759 ORTHO05D008633 8.5e-107 391.0 282 64.2
Manes.16G016600 Manihot esculenta HOM05D006759 ORTHO05D008633 8.5e-107 391.0 279 67.4
Atru.chr10.2043 Acer truncatum HOM05D006759 ORTHO05D008633 1.1e-106 390.6 263 70.0
CAN.G424.100 Capsicum annuum HOM05D006759 ORTHO05D008633 1.1e-106 390.6 303 64.0
Oeu058167.4 Olea europaea HOM05D006759 ORTHO05D008633 1.1e-106 390.6 302 62.6
Lsat_1_v5_gn_7_18360 Lactuca sativa HOM05D006759 ORTHO05D008633 1.9e-106 389.8 260 68.8
HanXRQChr05g0130811 Helianthus annuus HOM05D006759 ORTHO05D008633 2.5e-106 389.4 284 64.4
ECA236G1815 Erigeron canadensis HOM05D006759 ORTHO05D008633 5.5e-106 388.3 278 64.4
Gohir.D10G017100 Gossypium hirsutum HOM05D006759 ORTHO05D008633 5.5e-106 388.3 280 66.4
Sabra11G0019100 Salix brachista HOM05D006759 ORTHO05D008633 5.5e-106 388.3 280 65.4
ATR0073G021 Amborella trichopoda HOM05D006759 ORTHO05D008633 7.2e-106 387.9 258 70.5
CDE05G1382 Ceratophyllum demersum HOM05D006759 ORTHO05D008633 7.2e-106 387.9 261 67.4
Ca_18449_v3 Cicer arietinum L. HOM05D006759 ORTHO05D008633 1.2e-105 387.1 263 68.1
Duzib160G0398 Durio zibethinus HOM05D006759 ORTHO05D008633 1.6e-105 386.7 280 67.1
Sabra11G0024900 Salix brachista HOM05D006759 ORTHO05D008633 1.6e-105 386.7 280 65.7
THA.LOC104812582 Tarenaya hassleriana HOM05D006759 ORTHO05D008633 2.1e-105 386.3 282 65.6
Thecc.06G208000 Theobroma cacao HOM05D006759 ORTHO05D008633 6.1e-105 384.8 280 66.1
Cc02_g11810 Coffea canephora HOM05D006759 ORTHO05D008633 1.0e-104 384.0 268 67.5
Psat7g105480 Pisum sativum HOM05D006759 ORTHO05D008633 1.0e-104 384.0 282 64.5
Medtr4g092110 Medicago truncatula HOM05D006759 ORTHO05D008633 4.0e-104 382.1 280 64.6
PGSC0003DMG400021726 Solanum tuberosum HOM05D006759 ORTHO05D008633 5.2e-104 381.7 303 62.7
DCAR_028150 Daucus carota HOM05D006759 ORTHO05D008633 6.8e-104 381.3 261 66.7
arahy.Tifrunner.gnm1.ann1.13LU1X Arachis hypogaea HOM05D006759 ORTHO05D008633 5.7e-103 378.3 281 65.8
arahy.Tifrunner.gnm1.ann1.6345FV Arachis hypogaea HOM05D006759 ORTHO05D008633 7.5e-103 377.9 279 65.9
COL.COLO4_31683 Corchorus olitorius HOM05D006759 ORTHO05D008633 7.5e-103 377.9 280 63.6
CARHR227890 Cardamine hirsuta HOM05D006759 ORTHO05D008633 1.3e-102 377.1 280 64.6
Sopen02g024680 Solanum pennellii HOM05D006759 ORTHO05D008633 1.3e-102 377.1 303 62.7
Carub.0007s2012 Capsella rubella HOM05D006759 ORTHO05D008633 2.2e-102 376.3 280 64.6
Solyc02g079930.3 Solanum lycopersicum HOM05D006759 ORTHO05D008633 3.7e-102 375.6 303 62.7
BraA03t14346Z Brassica rapa HOM05D006759 ORTHO05D008633 4.8e-102 375.2 276 63.4
Glyma.08G062300 Glycine max HOM05D006759 ORTHO05D008633 4.8e-102 375.2 261 65.5
BcaNung00862 Brassica carinata HOM05D006759 ORTHO05D008633 6.3e-102 374.8 259 66.8
C07p51160 Brassica napus HOM05D006759 ORTHO05D008633 6.3e-102 374.8 259 66.8
BolC7t45615H Brassica oleracea HOM05D006759 ORTHO05D008633 6.3e-102 374.8 259 66.8
Thhalv10025914m.g Eutrema salsugineum HOM05D006759 ORTHO05D008633 6.3e-102 374.8 258 67.4
A03p52720 Brassica napus HOM05D006759 ORTHO05D008633 1.1e-101 374.0 259 66.8
AL7G32800 Arabidopsis lyrata HOM05D006759 ORTHO05D008633 1.4e-101 373.6 258 67.4
Aa31LG6G3340 Aethionema arabicum HOM05D006759 ORTHO05D008633 1.8e-101 373.2 260 66.5
AT4G21320 Arabidopsis thaliana HOM05D006759 ORTHO05D008633 3.1e-101 372.5 258 67.4
Ah.14g088500 Amaranthus hybridus HOM05D006759 ORTHO05D008633 1.2e-100 370.5 271 64.2
AUR62014623 Chenopodium quinoa HOM05D006759 ORTHO05D008633 4.5e-100 368.6 271 63.5
Sp7g19390 Schrenkiella parvula HOM05D006759 ORTHO05D008633 3.8e-99 365.5 259 66.0
AUR62012578 Chenopodium quinoa HOM05D006759 ORTHO05D008633 5.0e-99 365.2 293 59.7
TPR.G13912 Trifolium pratense HOM05D006759 ORTHO05D008633 1.1e-98 364.0 264 64.8
BcaC06g30660 Brassica carinata HOM05D006759 ORTHO05D008633 1.5e-98 363.6 259 65.6
Sed0013464 Sechium edule HOM05D006759 ORTHO05D008633 3.2e-98 362.5 232 74.1
unitig_37.g12139 Utricularia gibba HOM05D006759 ORTHO05D008633 4.2e-98 362.1 261 65.1
HPP92_027153 Vanilla planifolia HOM05D006759 ORTHO05D008633 7.2e-98 361.3 232 71.6
EL10As6g23697 Beta vulgaris HOM05D006759 ORTHO05D008633 4.7e-97 358.6 293 59.4
Hund21315 Selenicereus undatus HOM05D006759 ORTHO05D008633 1.0e-96 357.5 252 67.1
Phvul.002G218300 Phaseolus vulgaris HOM05D006759 ORTHO05D008633 2.0e-92 343.2 277 59.9
Lj1C1222T1 Lonicera japonica HOM05D006759 ORTHO05D008633 4.5e-92 342.0 239 66.9
VMungo0251G0437 Vigna mungo HOM05D006759 ORTHO05D008633 9.5e-90 334.3 275 59.3
GSVIVG01004352001 Vitis vinifera HOM05D006759 ORTHO05D008633 2.7e-84 316.2 216 70.8
SEGI_30514 Sequoiadendron giganteum HOM05D006759 ORTHO05D008633 1.3e-83 313.9 261 58.6
Mapoly0122s0010 Marchantia polymorpha HOM05D006759 ORTHO05D008633 2.8e-73 279.6 265 53.6
AagrBONN_evm.TU.Sc2ySwM_117.529 Anthoceros agrestis HOM05D006759 ORTHO05D008633 3.1e-72 276.2 265 50.2
Pp3c22_820 Physcomitrium patens HOM05D006759 ORTHO05D008633 7.8e-68 261.5 257 49.0
Pp3c18_19780 Physcomitrium patens HOM05D006759 ORTHO05D008633 1.7e-67 260.4 254 49.2
Actinidia36908 Actinidia chinensis HOM05D006759 ORTHO05D008633 3.4e-63 246.1 165 67.9
SMO327G0040 Selaginella moellendorffii HOM05D006759 ORTHO05D008633 4.9e-46 189.1 254 40.2
Nn2g12529 Nelumbo nucifera HOM05D006759 ORTHO05D008633 4.6e-44 182.6 152 59.9
GSVIVG01002901001 Vitis vinifera HOM05D006759 ORTHO05D008633 7.6e-39 165.2 113 70.8
RcHm_v2.0_Chr5g0004571 Rosa chinensis HOM05D006759 ORTHO05D008633 5.1e-35 152.5 134 56.7
Hund21313 Selenicereus undatus HOM05D006759 ORTHO05D008633 7.6e-31 138.7 208 44.7
CANSAT21G1109 Cannabis sativa HOM05D006759 ORTHO05D008633 2.2e-30 137.1 95 66.3
Nn7g36203 Nelumbo nucifera HOM05D006759 ORTHO05D008633 2.9e-30 136.7 95 69.5
Glyma.07G186901 Glycine max HOM05D006759 ORTHO05D008633 1.4e-29 134.4 96 60.4
Potri.004G031100 Populus trichocarpa HOM05D006759 ORTHO05D008633 4.2e-29 132.9 187 39.6
Aqoxy1G03825 Aquilegia oxysepala HOM05D006759 ORTHO05D008633 1.0e-27 128.3 74 82.4
GSVIVG01004471001 Vitis vinifera HOM05D006759 ORTHO05D008633 3.2e-21 106.7 80 62.5
COL.COLO4_11824 Corchorus olitorius HOM05D000068 ORTHO05D000084 2.3e-19 100.5 69 68.1
COL.COLO4_37489 Corchorus olitorius HOM05D006759 ORTHO05D161314 2.3e-19 100.5 102 52.9


User provided reference genes

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