Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 7.0e-171 604.0 331 100.0
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 2.3e-137 492.7 332 79.2
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 3.4e-117 425.6 318 74.5
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 6.0e-114 414.8 331 69.2
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 5.6e-112 408.3 315 67.0
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 4.8e-111 405.2 304 69.1
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 6.9e-110 401.4 317 69.4
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.0e-110 401.0 317 64.7
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 9.0e-110 401.0 310 67.4
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 4.5e-109 398.7 317 65.3
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 2.2e-108 396.4 314 66.2
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.2e-108 396.4 317 64.7
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 2.9e-108 396.0 317 65.3
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.9e-108 396.0 314 66.6
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 4.9e-108 395.2 313 67.1
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 6.5e-108 394.8 320 70.3
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 6.5e-108 394.8 317 64.4
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.4e-107 393.7 317 64.4
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.9e-107 393.3 285 70.2
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.9e-107 393.3 317 63.7
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.9e-107 393.3 318 69.5
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 2.5e-107 392.9 312 65.4
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.2e-107 392.5 306 67.6
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 4.2e-107 392.1 285 69.1
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 4.2e-107 392.1 320 65.3
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.2e-106 390.6 286 68.5
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.0e-105 387.5 316 64.9
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.0e-105 387.5 313 64.5
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.0e-105 387.5 285 69.1
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.3e-105 387.1 315 65.4
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 3.0e-105 386.0 314 64.0
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 8.7e-105 384.4 313 64.2
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.1e-104 384.0 286 68.2
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 2.5e-104 382.9 285 67.7
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 2.5e-104 382.9 313 64.2
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.5e-104 382.9 285 67.0
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 7.4e-104 381.3 288 68.1
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 9.6e-104 380.9 310 63.5
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.6e-103 380.2 285 66.0
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 1.6e-103 380.2 310 64.5
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 4.8e-103 378.6 286 68.5
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 4.8e-103 378.6 311 62.1
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 2.4e-102 376.3 314 65.0
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.4e-102 376.3 320 64.1
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 3.1e-102 375.9 312 63.5
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 3.1e-102 375.9 285 66.7
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 3.1e-102 375.9 318 63.8
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 4.1e-102 375.6 306 64.1
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 4.1e-102 375.6 314 67.8
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 9.0e-102 374.4 318 63.5
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 2.0e-101 373.2 321 62.0
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.6e-101 372.9 320 63.8
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.4e-101 372.5 283 65.7
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 3.4e-101 372.5 314 62.1
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 3.4e-101 372.5 318 63.2
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.4e-101 372.5 318 61.3
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 5.9e-101 371.7 313 64.2
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 5.9e-101 371.7 285 64.6
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 7.6e-101 371.3 315 63.2
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 7.6e-101 371.3 313 62.6
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.0e-100 370.9 312 62.5
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.3e-100 370.5 316 62.3
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 1.7e-100 370.2 315 62.9
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 1.7e-100 370.2 316 63.0
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 2.2e-100 369.8 315 62.5
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 2.9e-100 369.4 322 61.8
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 5.0e-100 368.6 315 62.2
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.4e-99 367.1 317 62.5
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.9e-99 366.7 309 62.5
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.9e-99 366.7 309 62.5
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.9e-99 366.7 295 65.4
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 1.9e-99 366.7 316 61.7
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.5e-99 366.3 316 62.0
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 2.5e-99 366.3 296 63.5
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 4.2e-99 365.5 316 61.7
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 5.5e-99 365.2 313 61.3
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 5.5e-99 365.2 315 62.5
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 7.2e-99 364.8 316 60.8
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 7.2e-99 364.8 321 61.1
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 9.3e-99 364.4 295 62.7
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 1.6e-98 363.6 346 58.7
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.6e-98 363.6 319 63.0
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 2.1e-98 363.2 318 61.9
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 2.1e-98 363.2 285 65.3
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.7e-98 362.8 252 70.2
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.5e-98 362.5 287 64.1
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 3.5e-98 362.5 346 59.8
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 4.6e-98 362.1 316 59.2
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 4.6e-98 362.1 287 64.1
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.6e-98 362.1 287 64.1
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.6e-98 362.1 287 64.1
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 4.6e-98 362.1 319 62.7
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 6.1e-98 361.7 285 64.9
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 7.9e-98 361.3 317 61.5
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 1.3e-97 360.5 309 62.1
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.3e-97 360.5 313 61.0
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.3e-97 359.8 287 63.8
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 3.0e-97 359.4 309 62.1
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 5.1e-97 358.6 309 61.2
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 5.1e-97 358.6 309 61.2
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 6.7e-97 358.2 305 63.3
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 6.7e-97 358.2 317 60.3
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 8.7e-97 357.8 316 60.4
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-96 357.5 309 61.8
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.1e-96 357.5 309 61.8
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.9e-96 356.7 318 60.4
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 1.9e-96 356.7 388 55.9
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.9e-96 356.7 318 61.0
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 2.5e-96 356.3 309 61.2
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 7.4e-96 354.8 316 60.1
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 9.7e-96 354.4 326 62.6
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 3.1e-94 349.4 285 62.1
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 5.3e-94 348.6 314 60.5
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 1.5e-93 347.1 320 57.8
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 2.0e-93 346.7 309 60.8
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.0e-92 344.4 302 62.9
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.3e-92 344.0 316 58.5
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 3.8e-92 342.4 337 57.6
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 2.1e-90 336.7 327 56.9
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 5.7e-88 328.6 303 58.1
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 5.7e-88 328.6 288 59.4
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 7.4e-88 328.2 334 56.3
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 2.2e-87 326.6 292 61.6
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 3.7e-87 325.9 395 48.6
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 3.7e-87 325.9 314 55.7
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 3.9e-81 305.8 288 57.3
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 6.3e-79 298.5 300 57.0
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.1e-78 296.2 375 47.5
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 3.5e-77 292.7 333 53.5
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.5e-77 292.4 321 53.9
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 6.5e-76 288.5 284 56.0
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 7.2e-75 285.0 301 52.2
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 6.3e-71 271.9 309 51.8
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 1.4e-70 270.8 315 51.7
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 2.0e-69 266.9 314 51.0
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.0e-69 266.9 249 57.0
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 6.5e-68 261.9 283 51.6
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 8.0e-66 255.0 293 51.2
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 5.0e-60 235.7 173 69.4
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 3.2e-59 233.0 271 50.9
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 4.0e-57 226.1 168 69.6
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 2.8e-55 219.9 183 65.6
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 6.3e-55 218.8 219 58.9
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 3.5e-53 213.0 255 52.5
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 2.3e-52 210.3 141 81.6
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 2.5e-51 206.8 315 43.2
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 2.1e-50 203.8 150 65.3
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.5e-45 186.4 135 74.1
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-42 177.6 175 59.4
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 5.2e-41 172.6 293 38.9
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.8e-40 169.1 180 56.7
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 4.1e-38 162.9 161 59.6
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 6.0e-29 132.5 303 35.0
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-26 124.8 137 55.5
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.2e-24 118.2 291 32.6
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.1e-22 109.8 108 55.6
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.3e-20 104.8 75 60.0
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.0e-20 103.6 68 69.1
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.2e-18 98.2 79 58.2
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 4.4e-16 89.7 101 54.5
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 3.8e-15 86.7 100 51.0
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 1.6e-13 81.3 63 66.7
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 6.0e-13 79.3 56 69.6
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 2.8e-10 70.5 62 62.9
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.5e-08 63.2 37 83.8
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.9e-07 60.5 45 64.4


User provided reference genes

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