Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0380000 Oryza sativa ssp. japonica HOM05D001741 ORTHO05D002196 5.5e-52 208.0 163 100.0
Os04g0382300 Oryza sativa ssp. japonica HOM05D001741 ORTHO05D002196 1.0e-21 107.5 53 96.2
Zm00001eb085680 Zea mays HOM05D001741 ORTHO05D002196 8.9e-18 94.4 51 90.2
Phvul.009G166800 Phaseolus vulgaris HOM05D001741 ORTHO05D002196 3.3e-12 75.9 50 68.0
arahy.Tifrunner.gnm1.ann1.C8GL8Z Arachis hypogaea HOM05D001741 ORTHO05D002196 5.6e-12 75.1 50 66.0
arahy.Tifrunner.gnm1.ann1.N42VFA Arachis hypogaea HOM05D001741 ORTHO05D002196 5.6e-12 75.1 50 66.0
Glyma.04G195300 Glycine max HOM05D001741 ORTHO05D002196 5.6e-12 75.1 50 66.0
Lalb_Chr08g0237101 Lupinus albus HOM05D001741 ORTHO05D002196 9.5e-12 74.3 50 64.0
Lj4g0020824 Lotus japonicus HOM05D001741 ORTHO05D002196 1.2e-11 73.9 49 67.3
Glyma.06G170700 Glycine max HOM05D001741 ORTHO05D002196 1.6e-11 73.6 50 64.0
Gohir.A11G036200 Gossypium hirsutum HOM05D001741 ORTHO05D002196 1.6e-11 73.6 53 64.2
Gohir.D11G039700 Gossypium hirsutum HOM05D001741 ORTHO05D002196 1.6e-11 73.6 53 64.2
Gorai.007G042700 Gossypium raimondii HOM05D001741 ORTHO05D002196 1.6e-11 73.6 53 64.2
Atru.chr9.1046 Acer truncatum HOM05D001741 ORTHO05D002196 2.1e-11 73.2 52 61.5
ClCG06G017850 Citrullus lanatus HOM05D001741 ORTHO05D002196 2.1e-11 73.2 51 62.7
Migut.I00503 Erythranthe guttata HOM05D001741 ORTHO05D002196 2.1e-11 73.2 50 66.0
Glyma.05G047700 Glycine max HOM05D001741 ORTHO05D002196 2.1e-11 73.2 43 74.4
unitig_744.g24644 Utricularia gibba HOM05D001741 ORTHO05D002196 2.1e-11 73.2 50 66.0
Nn3g16485 Nelumbo nucifera HOM05D001741 ORTHO05D002196 2.8e-11 72.8 42 76.2
Prupe.5G152000 Prunus persica HOM05D001741 ORTHO05D002196 2.8e-11 72.8 45 68.9
Thecc.03G128100 Theobroma cacao HOM05D001741 ORTHO05D002196 2.8e-11 72.8 51 66.7
VMungo1309G2181 Vigna mungo HOM05D001741 ORTHO05D002196 2.8e-11 72.8 50 66.0
MSTRG.11280 Avicennia marina HOM05D001741 ORTHO05D002196 3.6e-11 72.4 52 63.5
Ciclev10020027m.g Citrus clementina HOM05D001741 ORTHO05D002196 3.6e-11 72.4 48 64.6
MELO3C026210.2 Cucumis melo HOM05D001741 ORTHO05D002196 3.6e-11 72.4 46 67.4
Gohir.A12G189100 Gossypium hirsutum HOM05D001741 ORTHO05D002196 3.6e-11 72.4 51 62.7
Gohir.D12G191400 Gossypium hirsutum HOM05D001741 ORTHO05D002196 3.6e-11 72.4 51 62.7
Gorai.008G205700 Gossypium raimondii HOM05D001741 ORTHO05D002196 3.6e-11 72.4 51 62.7
SalBow5G5718 Salvia bowleyana HOM05D001741 ORTHO05D002196 3.6e-11 72.4 45 71.1
SGA_v2.0_scaffold215G42330 Striga asiatica HOM05D001741 ORTHO05D002196 3.6e-11 72.4 52 63.5
arahy.Tifrunner.gnm1.ann1.5BLU0Q Arachis hypogaea HOM05D001741 ORTHO05D002196 4.7e-11 72.0 46 69.6
arahy.Tifrunner.gnm1.ann1.H9YH0C Arachis hypogaea HOM05D001741 ORTHO05D002196 4.7e-11 72.0 46 69.6
CsaV3_1G000600 Cucumis sativus L. HOM05D001741 ORTHO05D002196 4.7e-11 72.0 46 67.4
PSO063G4202 Papaver somniferum HOM05D001741 ORTHO05D002196 4.7e-11 72.0 44 70.5
HPP92_003562 Vanilla planifolia HOM05D001741 ORTHO05D002196 4.7e-11 72.0 66 53.0
Manes.06G118900 Manihot esculenta HOM05D001741 ORTHO05D002196 6.2e-11 71.6 49 65.3
MELO3C010151.2 Cucumis melo HOM05D001741 ORTHO05D002196 8.0e-11 71.2 43 69.8
CsaV3_1G045230 Cucumis sativus L. HOM05D001741 ORTHO05D002196 8.0e-11 71.2 43 69.8
CSS0031290 Camellia sinensis var. sinensis HOM05D001741 ORTHO05D002196 1.1e-10 70.9 50 68.0
vmacro19201 Vaccinium macrocarpon HOM05D001741 ORTHO05D002196 1.1e-10 70.9 58 62.1
HPP92_008090 Vanilla planifolia HOM05D001741 ORTHO05D002196 1.1e-10 70.9 50 72.0
Potri.015G094700 Populus trichocarpa HOM05D001741 ORTHO05D002196 1.4e-10 70.5 50 62.0
Sabra15G0116100 Salix brachista HOM05D001741 ORTHO05D002196 1.4e-10 70.5 50 62.0
ATR0561G043 Amborella trichopoda HOM05D001741 ORTHO05D002196 1.8e-10 70.1 56 64.3
COL.COLO4_28099 Corchorus olitorius HOM05D001741 ORTHO05D002196 1.8e-10 70.1 43 67.4
DCAR_021615 Daucus carota HOM05D001741 ORTHO05D002196 1.8e-10 70.1 43 69.8
HanXRQChr09g0273111 Helianthus annuus HOM05D001741 ORTHO05D002196 1.8e-10 70.1 53 58.5
Medtr4g103550 Medicago truncatula HOM05D001741 ORTHO05D002196 1.8e-10 70.1 50 62.0
RcHm_v2.0_Chr7g0190321 Rosa chinensis HOM05D001741 ORTHO05D002196 1.8e-10 70.1 43 67.4
Sabra12G0071000 Salix brachista HOM05D001741 ORTHO05D002196 1.8e-10 70.1 50 62.0
VMungo1215G0164 Vigna mungo HOM05D001741 ORTHO05D002196 1.8e-10 70.1 43 72.1
Atru.chr9.1110 Acer truncatum HOM05D001741 ORTHO05D002196 2.3e-10 69.7 52 61.5
CDE02G3087 Ceratophyllum demersum HOM05D001741 ORTHO05D002196 2.3e-10 69.7 56 60.7
Ca_00908_v3 Cicer arietinum L. HOM05D001741 ORTHO05D002196 2.3e-10 69.7 50 62.0
Cc04_g10020 Coffea canephora HOM05D001741 ORTHO05D002196 2.3e-10 69.7 49 63.3
Lsat_1_v5_gn_4_80361 Lactuca sativa HOM05D001741 ORTHO05D002196 2.3e-10 69.7 53 58.5
Nitab4.5_0005560g0020 Nicotiana tabacum HOM05D001741 ORTHO05D002196 2.3e-10 69.7 43 67.4
Nitab4.5_0007114g0010 Nicotiana tabacum HOM05D001741 ORTHO05D002196 2.3e-10 69.7 43 67.4
Phvul.003G210600 Phaseolus vulgaris HOM05D001741 ORTHO05D002196 2.3e-10 69.7 43 72.1
CAN.G352.18 Capsicum annuum HOM05D001741 ORTHO05D002196 3.1e-10 69.3 43 65.1
ECA232G3143 Erigeron canadensis HOM05D001741 ORTHO05D002196 3.1e-10 69.3 52 57.7
Lsat_1_v5_gn_5_13660 Lactuca sativa HOM05D001741 ORTHO05D002196 3.1e-10 69.3 54 55.6
MD14G1157900 Malus domestica HOM05D001741 ORTHO05D002196 3.1e-10 69.3 42 69.0
Peaxi162Scf00089g00622 Petunia axillaris HOM05D001741 ORTHO05D002196 3.1e-10 69.3 43 67.4
Sed0025327 Sechium edule HOM05D001741 ORTHO05D002196 3.1e-10 69.3 45 68.9
Solyc03g111310.3 Solanum lycopersicum HOM05D001741 ORTHO05D002196 3.1e-10 69.3 43 65.1
Sopen03g030440 Solanum pennellii HOM05D001741 ORTHO05D002196 3.1e-10 69.3 43 65.1
PGSC0003DMG400015241 Solanum tuberosum HOM05D001741 ORTHO05D002196 3.1e-10 69.3 43 65.1
TPR.G8684 Trifolium pratense HOM05D001741 ORTHO05D002196 3.1e-10 69.3 50 62.0
TAR374G0301 Trochodendron aralioides HOM05D001741 ORTHO05D002196 3.1e-10 69.3 47 70.2
Duzib205G0683 Durio zibethinus HOM05D001741 ORTHO05D002196 4.0e-10 68.9 51 60.8
MD06G1142700 Malus domestica HOM05D001741 ORTHO05D002196 4.0e-10 68.9 42 69.0
Psat0s3911g0120 Pisum sativum HOM05D001741 ORTHO05D002196 4.0e-10 68.9 50 62.0
Potri.012G097000 Populus trichocarpa HOM05D001741 ORTHO05D002196 4.0e-10 68.9 50 60.0
Lalb_Chr13g0297271 Lupinus albus HOM05D001741 ORTHO05D002196 5.2e-10 68.6 41 73.2
CDE05G1334 Ceratophyllum demersum HOM05D001741 ORTHO05D002196 6.8e-10 68.2 56 58.9
Eucgr.K02734 Eucalyptus grandis HOM05D001741 ORTHO05D002196 6.8e-10 68.2 50 60.0
Rhsim08G0189400 Rhododendron simsii HOM05D001741 ORTHO05D002196 6.8e-10 68.2 48 64.6
THA.LOC104825014 Tarenaya hassleriana HOM05D001741 ORTHO05D002196 8.9e-10 67.8 65 52.3
TWI39G0196 Tripterygium wilfordii HOM05D001741 ORTHO05D002196 8.9e-10 67.8 47 66.0
CiPaw.11G008300 Carya illinoinensis HOM05D001741 ORTHO05D002196 1.2e-09 67.4 47 68.1
FvH4_5g08190 Fragaria vesca HOM05D001741 ORTHO05D002196 1.2e-09 67.4 42 64.3
FAN08G1498 Fragaria x ananassa HOM05D001741 ORTHO05D002196 1.2e-09 67.4 42 64.3
FAN13G1951 Fragaria x ananassa HOM05D001741 ORTHO05D002196 1.2e-09 67.4 42 64.3
Peaxi162Scf00536g00118 Petunia axillaris HOM05D001741 ORTHO05D002196 1.2e-09 67.4 43 65.1
CANSAT80G0140 Cannabis sativa HOM05D001741 ORTHO05D002196 1.5e-09 67.0 42 66.7
CANSAT80G1307 Cannabis sativa HOM05D001741 ORTHO05D002196 1.5e-09 67.0 42 66.7
HanXRQChr08g0236781 Helianthus annuus HOM05D001741 ORTHO05D002196 1.5e-09 67.0 52 59.6
Dinv11166 Davidia involucrata HOM05D001741 ORTHO05D002196 2.0e-09 66.6 54 59.3
DCAR_026227 Daucus carota HOM05D001741 ORTHO05D002196 2.6e-09 66.2 46 63.0
Glyma.17G129600 Glycine max HOM05D001741 ORTHO05D002196 2.6e-09 66.2 43 67.4
MBI07_g27360_MAGBIO Magnolia biondii HOM05D001741 ORTHO05D002196 2.6e-09 66.2 47 68.1
FAN18G1243 Fragaria x ananassa HOM05D001741 ORTHO05D002196 3.4e-09 65.9 42 64.3
Oeu005008.1 Olea europaea HOM05D001741 ORTHO05D002196 4.4e-09 65.5 50 56.0
TWI14G0083 Tripterygium wilfordii HOM05D001741 ORTHO05D002196 4.4e-09 65.5 46 65.2
MSTRG.22903 Avicennia marina HOM05D001741 ORTHO05D002196 5.8e-09 65.1 43 65.1
Haze_07224 Corylus avellana HOM05D001741 ORTHO05D002196 5.8e-09 65.1 49 63.3
QL10p003722 Quercus lobata HOM05D001741 ORTHO05D002196 5.8e-09 65.1 46 65.2
Actinidia33101 Actinidia chinensis HOM05D001741 ORTHO05D002196 7.5e-09 64.7 39 71.8
BraA06t24997Z Brassica rapa HOM05D001741 ORTHO05D002196 7.5e-09 64.7 47 61.7
GSVIVG01008534001 Vitis vinifera HOM05D001741 ORTHO05D002196 7.5e-09 64.7 46 63.0
EL10As4g23389 Beta vulgaris HOM05D001741 ORTHO05D002196 9.8e-09 64.3 45 66.7
Cpa.g.sc13.126 Carica papaya HOM05D001741 ORTHO05D002196 9.8e-09 64.3 50 58.0
FAN04G1471 Fragaria x ananassa HOM05D001741 ORTHO05D002196 9.8e-09 64.3 42 61.9
HanXRQChr05g0155061 Helianthus annuus HOM05D001741 ORTHO05D002196 9.8e-09 64.3 52 55.8
THA.LOC104821515 Tarenaya hassleriana HOM05D001741 ORTHO05D002196 1.3e-08 63.9 39 69.2
Aqoxy5G03395 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 1.7e-08 63.5 48 62.5
Cfa018831 Carpinus fangiana HOM05D001741 ORTHO05D002196 2.2e-08 63.2 42 71.4
Hund02438 Selenicereus undatus HOM05D001741 ORTHO05D002196 2.2e-08 63.2 45 66.7
BraA01t02448Z Brassica rapa HOM05D001741 ORTHO05D002196 2.9e-08 62.8 45 64.4
CARHR157330 Cardamine hirsuta HOM05D001741 ORTHO05D002196 2.9e-08 62.8 46 63.0
AL5G27980 Arabidopsis lyrata HOM05D001741 ORTHO05D002196 3.7e-08 62.4 45 64.4
AT3G48530 Arabidopsis thaliana HOM05D001741 ORTHO05D002196 3.7e-08 62.4 45 64.4
BcaB01g00800 Brassica carinata HOM05D001741 ORTHO05D002196 3.7e-08 62.4 45 64.4
BcaB05g23010 Brassica carinata HOM05D001741 ORTHO05D002196 3.7e-08 62.4 45 64.4
BcaC09g49874 Brassica carinata HOM05D001741 ORTHO05D002196 3.7e-08 62.4 45 64.4
A01p25670 Brassica napus HOM05D001741 ORTHO05D002196 3.7e-08 62.4 45 64.4
C01p32240 Brassica napus HOM05D001741 ORTHO05D002196 3.7e-08 62.4 45 64.4
BolC1t03130H Brassica oleracea HOM05D001741 ORTHO05D002196 3.7e-08 62.4 45 64.4
Carub.0005s1472 Capsella rubella HOM05D001741 ORTHO05D002196 3.7e-08 62.4 45 64.4
BcaC07g39340 Brassica carinata HOM05D001741 ORTHO05D002196 4.9e-08 62.0 45 64.4
A06p19130 Brassica napus HOM05D001741 ORTHO05D002196 4.9e-08 62.0 45 64.4
C08p23570 Brassica napus HOM05D001741 ORTHO05D002196 4.9e-08 62.0 45 64.4
BolC8t49987H Brassica oleracea HOM05D001741 ORTHO05D002196 4.9e-08 62.0 45 64.4
Sp5g13450 Schrenkiella parvula HOM05D001741 ORTHO05D002196 4.9e-08 62.0 45 64.4
Thhalv10010404m.g Eutrema salsugineum HOM05D001741 ORTHO05D002196 6.4e-08 61.6 46 60.9
Aa31LG4G17150 Aethionema arabicum HOM05D001741 ORTHO05D002196 8.3e-08 61.2 46 58.7
Hma1.2p1_1966F.1_g309395 Hydrangea macrophylla HOM05D001741 ORTHO05D002196 1.4e-07 60.5 46 58.7
PGR044G0132 Punica granatum HOM05D001741 ORTHO05D002196 1.4e-07 60.5 51 54.9
Sc22g0003860 Simmondsia chinensis HOM05D001741 ORTHO05D002196 1.4e-07 60.5 45 62.2
Rhsim12G0174100 Rhododendron simsii HOM05D001741 ORTHO05D002196 2.4e-07 59.7 47 59.6
AUR62029622 Chenopodium quinoa HOM05D001741 ORTHO05D002196 3.2e-07 59.3 45 57.8
vmacro16675 Vaccinium macrocarpon HOM05D001741 ORTHO05D002196 1.2e-06 57.4 47 59.6
ECA246G2326 Erigeron canadensis HOM05D001741 ORTHO05D002196 3.5e-06 55.8 41 58.5
Os01g0921500 Oryza sativa ssp. japonica HOM05D001741 ORTHO05D002196 7.8e-06 54.7 40 65.0


User provided reference genes

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