Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0669600 Oryza sativa ssp. japonica HOM05D003234 ORTHO05D003635 6.4e-42 173.7 90 100.0
Dinv39975 Davidia involucrata HOM05D003234 ORTHO05D003635 4.9e-26 120.9 89 73.0
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 1.2e-21 106.3 106 58.5
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 1.4e-20 102.8 106 59.4
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 2.6e-19 98.6 106 58.5
Ciclev10026821m.g Citrus clementina HOM05D003234 ORTHO05D003635 5.8e-19 97.4 106 55.7
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 7.6e-19 97.1 106 55.7
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 9.9e-19 96.7 106 56.6
Migut.H00998 Erythranthe guttata HOM05D003234 ORTHO05D003635 9.9e-19 96.7 106 53.8
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 1.7e-18 95.9 106 52.8
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 3.8e-18 94.7 107 56.1
Thecc.01G037000 Theobroma cacao HOM05D003234 ORTHO05D003635 6.4e-18 94.0 106 53.8
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 1.4e-17 92.8 106 55.7
Nn1g05018 Nelumbo nucifera HOM05D003234 ORTHO05D003635 3.2e-17 91.7 107 53.3
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 4.2e-17 91.3 106 53.8
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 4.2e-17 91.3 105 50.5
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 9.2e-17 90.1 106 53.8
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 1.2e-16 89.7 106 50.0
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 1.2e-16 89.7 105 52.4
Zm00001eb009770 Zea mays HOM05D003234 ORTHO05D003635 1.6e-16 89.4 107 50.5
Gohir.D12G065100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.1e-16 89.0 106 52.8
Gorai.008G068300 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.1e-16 89.0 106 52.8
Gorai.011G102100 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.7e-16 88.6 106 51.9
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 6.0e-16 87.4 105 53.3
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 6.0e-16 87.4 106 51.9
Lj4g0023984 Lotus japonicus HOM05D003234 ORTHO05D003635 2.3e-15 85.5 106 51.9
SGA_v2.0_scaffold276G46636 Striga asiatica HOM05D003234 ORTHO05D003635 2.3e-15 85.5 125 44.0
Gohir.D10G092900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.0e-15 85.1 106 50.9
Gohir.A10G095000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 8.7e-15 83.6 106 50.0
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 1.1e-14 83.2 108 52.8
CiPaw.02G016600 Carya illinoinensis HOM05D003234 ORTHO05D003635 1.9e-14 82.4 106 50.0
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 2.5e-14 82.0 106 47.2
Sopen02g030060 Solanum pennellii HOM05D003234 ORTHO05D003635 3.3e-14 81.6 106 52.8
Lalb_Chr09g0322471 Lupinus albus HOM05D003234 ORTHO05D003635 5.6e-14 80.9 106 50.0
Glyma.01G175400 Glycine max HOM05D003234 ORTHO05D003635 2.1e-13 79.0 108 50.9
Atru.chr3.563 Acer truncatum HOM05D003234 ORTHO05D003635 3.6e-13 78.2 106 50.0
TPR.G34985 Trifolium pratense HOM05D003234 ORTHO05D003635 4.7e-13 77.8 106 51.9
Glyma.11G067600 Glycine max HOM05D003234 ORTHO05D003635 8.1e-13 77.0 108 50.0
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 8.1e-13 77.0 105 42.9
TAR381G0421 Trochodendron aralioides HOM05D003234 ORTHO05D003635 8.1e-13 77.0 70 64.3
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 1.4e-12 76.3 107 48.6
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 1.4e-12 76.3 107 43.0
Psat4g092120 Pisum sativum HOM05D003234 ORTHO05D003635 1.8e-12 75.9 106 49.1
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 4.0e-12 74.7 107 43.0
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 4.0e-12 74.7 107 42.1
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 6.9e-12 73.9 109 40.4
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 6.9e-12 73.9 106 41.5
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 9.0e-12 73.6 106 43.4
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 9.0e-12 73.6 107 40.2
Os03g0227500 Oryza sativa ssp. japonica HOM05D003234 ORTHO05D003635 9.0e-12 73.6 70 55.7
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 1.2e-11 73.2 107 40.2
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 1.2e-11 73.2 107 40.2
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.2e-11 73.2 107 41.1
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 1.5e-11 72.8 107 41.1
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.5e-11 72.8 107 40.2
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.5e-11 72.8 107 40.2
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 1.5e-11 72.8 108 40.7
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 1.5e-11 72.8 108 39.8
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 1.5e-11 72.8 107 40.2
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 2.0e-11 72.4 106 49.1
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 2.0e-11 72.4 106 49.1
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 2.0e-11 72.4 107 40.2
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 2.0e-11 72.4 108 40.7
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 2.0e-11 72.4 106 39.6
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 2.0e-11 72.4 108 39.8
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 2.0e-11 72.4 107 40.2
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 2.0e-11 72.4 108 39.8
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.6e-11 72.0 107 40.2
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.6e-11 72.0 107 40.2
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.6e-11 72.0 107 40.2
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 2.6e-11 72.0 107 41.1
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 2.6e-11 72.0 107 40.2
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 2.6e-11 72.0 107 40.2
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 3.4e-11 71.6 106 38.7
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 3.4e-11 71.6 107 40.2
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 3.4e-11 71.6 108 39.8
Phvul.002G029601 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 3.4e-11 71.6 106 45.3
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 3.4e-11 71.6 108 38.9
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 3.4e-11 71.6 108 39.8
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 4.4e-11 71.2 108 38.9
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 4.4e-11 71.2 107 40.2
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 4.4e-11 71.2 107 40.2
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 5.8e-11 70.9 107 39.3
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 5.8e-11 70.9 107 40.2
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 5.8e-11 70.9 107 40.2
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 5.8e-11 70.9 107 40.2
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 7.6e-11 70.5 107 39.3
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 7.6e-11 70.5 107 41.1
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 9.9e-11 70.1 107 39.3
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 9.9e-11 70.1 107 41.1
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 9.9e-11 70.1 107 39.3
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 9.9e-11 70.1 108 39.8
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 9.9e-11 70.1 107 38.3
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 9.9e-11 70.1 107 38.3
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 1.3e-10 69.7 107 37.4
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 1.3e-10 69.7 107 38.3
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.3e-10 69.7 107 39.3
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 1.3e-10 69.7 107 38.3
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 1.3e-10 69.7 107 39.3
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 1.7e-10 69.3 107 38.3
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.7e-10 69.3 107 38.3
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 1.7e-10 69.3 108 40.7
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.7e-10 69.3 107 39.3
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.7e-10 69.3 107 39.3
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 1.7e-10 69.3 107 40.2
CSS0034652 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 2.2e-10 68.9 90 44.4
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 2.2e-10 68.9 107 38.3
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 2.2e-10 68.9 107 40.2
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.2e-10 68.9 107 38.3
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 2.2e-10 68.9 104 41.3
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 2.9e-10 68.6 108 38.9
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 2.9e-10 68.6 107 38.3
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 2.9e-10 68.6 107 39.3
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 3.8e-10 68.2 107 38.3
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 3.8e-10 68.2 107 38.3
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.8e-10 68.2 107 37.4
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 3.8e-10 68.2 109 38.5
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 4.9e-10 67.8 107 39.3
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 4.9e-10 67.8 107 39.3
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 4.9e-10 67.8 107 37.4
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 4.9e-10 67.8 107 39.3
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 4.9e-10 67.8 107 38.3
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 4.9e-10 67.8 107 37.4
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 4.9e-10 67.8 107 37.4
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 6.4e-10 67.4 106 38.7
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 6.4e-10 67.4 107 37.4
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.4e-10 67.4 107 38.3
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.4e-10 67.4 107 38.3
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 6.4e-10 67.4 107 38.3
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 6.4e-10 67.4 107 40.2
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 8.4e-10 67.0 109 36.7
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 8.4e-10 67.0 109 38.5
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.1e-09 66.6 106 38.7
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.1e-09 66.6 107 37.4
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 1.1e-09 66.6 108 37.0
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 1.1e-09 66.6 109 36.7
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 1.1e-09 66.6 108 38.9
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 1.4e-09 66.2 107 37.4
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 1.4e-09 66.2 109 37.6
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 1.9e-09 65.9 107 37.4
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 1.9e-09 65.9 107 36.4
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 1.9e-09 65.9 107 39.3
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 2.4e-09 65.5 107 36.4
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 2.4e-09 65.5 107 36.4
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 2.4e-09 65.5 107 36.4
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 2.4e-09 65.5 107 36.4
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 2.4e-09 65.5 107 36.4
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 3.2e-09 65.1 109 38.5
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 3.2e-09 65.1 111 36.0
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 3.2e-09 65.1 107 36.4
HanXRQChr12g0366591 Helianthus annuus HOM05D003234 ORTHO05D003635 3.2e-09 65.1 107 37.4
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 4.2e-09 64.7 107 37.4
Lalb_Chr08g0246351 Lupinus albus HOM05D003234 ORTHO05D003635 4.2e-09 64.7 126 34.9
SHI08007 Sapria himalayana HOM05D003234 ORTHO05D003635 4.2e-09 64.7 114 38.6
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 5.4e-09 64.3 106 36.8
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 5.4e-09 64.3 107 36.4
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 5.4e-09 64.3 107 38.3
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 5.4e-09 64.3 107 37.4
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 5.4e-09 64.3 109 38.5
Gohir.A12G065000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 7.1e-09 63.9 93 52.7
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 7.1e-09 63.9 107 38.3
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 7.1e-09 63.9 109 38.5
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 9.3e-09 63.5 109 35.8
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 9.3e-09 63.5 106 39.6
Lalb_Chr11g0061721 Lupinus albus HOM05D003234 ORTHO05D003635 9.3e-09 63.5 114 34.2
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 9.3e-09 63.5 107 36.4
Migut.L00515 Erythranthe guttata HOM05D003234 ORTHO05D003635 1.2e-08 63.2 106 36.8
vmacro04393 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 1.2e-08 63.2 107 36.4
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 1.6e-08 62.8 109 37.6
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 2.1e-08 62.4 64 56.2
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 7.8e-08 60.5 107 39.3
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 1.7e-07 59.3 109 35.8
Lsat_1_v5_gn_8_27741 Lactuca sativa HOM05D003234 ORTHO05D003635 1.7e-07 59.3 105 36.2
CDE09G0257 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 2.3e-07 58.9 105 36.2
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 3.0e-07 58.5 109 33.9
HanXRQChr14g0428701 Helianthus annuus HOM05D003234 ORTHO05D003635 5.1e-07 57.8 109 36.7
Nn1g05766 Nelumbo nucifera HOM05D003234 ORTHO05D003635 1.5e-06 56.2 68 54.4
Peaxi162Scf00515g00521 Petunia axillaris HOM05D003234 ORTHO05D003635 2.5e-06 55.5 70 51.4
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 7.3e-06 53.9 68 48.5


User provided reference genes

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