Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0815700 Oryza sativa ssp. japonica HOM05D001718 ORTHO05D008006 3.4e-124 448.4 229 100.0
Zm00001eb258790 Zea mays HOM05D001718 ORTHO05D008006 3.5e-68 262.3 228 66.7
CDE05G2223 Ceratophyllum demersum HOM05D001718 ORTHO05D008006 2.0e-39 166.8 106 81.1
GSVIVG01001855001 Vitis vinifera HOM05D001718 ORTHO05D008006 2.0e-39 166.8 109 77.1
CSS0019444 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 3.4e-39 166.0 109 77.1
Peaxi162Scf01007g00115 Petunia axillaris HOM05D001718 ORTHO05D008006 4.4e-39 165.6 105 79.0
PGSC0003DMG400008622 Solanum tuberosum HOM05D001718 ORTHO05D008006 4.4e-39 165.6 102 81.4
ECA248G0176 Erigeron canadensis HOM05D001718 ORTHO05D008006 5.8e-39 165.2 117 71.8
Actinidia35932 Actinidia chinensis HOM05D001718 ORTHO05D008006 2.2e-38 163.3 106 77.4
CANSAT78G1590 Cannabis sativa HOM05D001718 ORTHO05D008006 2.2e-38 163.3 110 77.3
Nitab4.5_0001998g0070 Nicotiana tabacum HOM05D001718 ORTHO05D008006 2.2e-38 163.3 102 79.4
FvH4_4g05180 Fragaria vesca HOM05D001718 ORTHO05D008006 3.7e-38 162.5 124 68.5
Nn1g03028 Nelumbo nucifera HOM05D001718 ORTHO05D008006 3.7e-38 162.5 105 80.0
Sopen12g032840 Solanum pennellii HOM05D001718 ORTHO05D008006 3.7e-38 162.5 150 62.0
TPR.G18554 Trifolium pratense HOM05D001718 ORTHO05D008006 3.7e-38 162.5 105 79.0
FAN17G2486 Fragaria x ananassa HOM05D001718 ORTHO05D008006 4.9e-38 162.2 125 68.0
MBI07_g19048_MAGBIO Magnolia biondii HOM05D001718 ORTHO05D008006 4.9e-38 162.2 102 78.4
Solyc12g097030.2 Solanum lycopersicum HOM05D001718 ORTHO05D008006 4.9e-38 162.2 102 79.4
CAN.G566.5 Capsicum annuum HOM05D001718 ORTHO05D008006 6.4e-38 161.8 102 78.4
CSS0018370 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 8.3e-38 161.4 109 76.1
Nitab4.5_0002738g0040 Nicotiana tabacum HOM05D001718 ORTHO05D008006 8.3e-38 161.4 102 78.4
Sed0022047 Sechium edule HOM05D001718 ORTHO05D008006 8.3e-38 161.4 102 80.4
CSS0046227 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 1.1e-37 161.0 121 69.4
Actinidia37386 Actinidia chinensis HOM05D001718 ORTHO05D008006 1.4e-37 160.6 137 62.8
FAN12G0595 Fragaria x ananassa HOM05D001718 ORTHO05D008006 1.4e-37 160.6 119 69.7
HanXRQChr01g0022541 Helianthus annuus HOM05D001718 ORTHO05D008006 1.4e-37 160.6 102 78.4
Migut.G00591 Erythranthe guttata HOM05D001718 ORTHO05D008006 1.9e-37 160.2 100 78.0
CsaV3_2G012180 Cucumis sativus L. HOM05D001718 ORTHO05D008006 2.4e-37 159.8 105 77.1
Cfa014821 Carpinus fangiana HOM05D001718 ORTHO05D008006 3.2e-37 159.5 99 79.8
Cfa014823 Carpinus fangiana HOM05D001718 ORTHO05D008006 3.2e-37 159.5 99 79.8
RcHm_v2.0_Chr4g0396091 Rosa chinensis HOM05D001718 ORTHO05D008006 3.2e-37 159.5 135 64.4
CiPaw.01G175400 Carya illinoinensis HOM05D001718 ORTHO05D008006 4.1e-37 159.1 99 79.8
ClCG06G007500 Citrullus lanatus HOM05D001718 ORTHO05D008006 5.4e-37 158.7 105 76.2
Hma1.2p1_0112F.1_g054960 Hydrangea macrophylla HOM05D001718 ORTHO05D008006 5.4e-37 158.7 109 76.1
Lj5g0016567 Lotus japonicus HOM05D001718 ORTHO05D008006 5.4e-37 158.7 105 75.2
CSS0026405 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 1.2e-36 157.5 112 73.2
QL06p021972 Quercus lobata HOM05D001718 ORTHO05D008006 1.2e-36 157.5 99 77.8
PSO170G6300 Papaver somniferum HOM05D001718 ORTHO05D008006 1.6e-36 157.1 109 74.3
PSO674G0056 Papaver somniferum HOM05D001718 ORTHO05D008006 1.6e-36 157.1 109 74.3
Atru.chr4.1874 Acer truncatum HOM05D001718 ORTHO05D008006 2.0e-36 156.8 112 72.3
CSS0039982 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D008006 2.0e-36 156.8 113 71.7
Ca_09793_v3 Cicer arietinum L. HOM05D001718 ORTHO05D008006 2.7e-36 156.4 119 68.9
TAR362G0436 Trochodendron aralioides HOM05D001718 ORTHO05D008006 2.7e-36 156.4 113 70.8
AL7G36830 Arabidopsis lyrata HOM05D001718 ORTHO05D008006 3.5e-36 156.0 106 73.6
MELO3C023073.2 Cucumis melo HOM05D001718 ORTHO05D008006 3.5e-36 156.0 105 75.2
Dinv29785 Davidia involucrata HOM05D001718 ORTHO05D008006 3.5e-36 156.0 99 77.8
Psat6g138640 Pisum sativum HOM05D001718 ORTHO05D008006 3.5e-36 156.0 105 76.2
PGR004G0708 Punica granatum HOM05D001718 ORTHO05D008006 3.5e-36 156.0 109 72.5
SGA_v2.0_scaffold142G35679 Striga asiatica HOM05D001718 ORTHO05D008006 3.5e-36 156.0 98 78.6
Eucgr.H02885 Eucalyptus grandis HOM05D001718 ORTHO05D008006 4.6e-36 155.6 100 76.0
Glyma.20G199000 Glycine max HOM05D001718 ORTHO05D008006 4.6e-36 155.6 105 75.2
AT4G17740 Arabidopsis thaliana HOM05D001718 ORTHO05D008006 6.0e-36 155.2 106 73.6
Manes.03G156100 Manihot esculenta HOM05D001718 ORTHO05D008006 7.8e-36 154.8 105 74.3
VMungo0720G0699 Vigna mungo HOM05D001718 ORTHO05D008006 7.8e-36 154.8 105 76.2
Hund24866 Selenicereus undatus HOM05D001718 ORTHO05D008006 1.0e-35 154.5 106 73.6
TWI73G1142 Tripterygium wilfordii HOM05D001718 ORTHO05D008006 1.0e-35 154.5 106 72.6
arahy.Tifrunner.gnm1.ann1.45LQ32 Arachis hypogaea HOM05D001718 ORTHO05D008006 1.3e-35 154.1 109 72.5
arahy.Tifrunner.gnm1.ann1.E27NQH Arachis hypogaea HOM05D001718 ORTHO05D008006 1.3e-35 154.1 109 72.5
Thecc.04G268900 Theobroma cacao HOM05D001718 ORTHO05D008006 1.7e-35 153.7 105 75.2
PSO170G2849 Papaver somniferum HOM05D001718 ORTHO05D008006 2.3e-35 153.3 109 72.5
Prupe.1G052500 Prunus persica HOM05D001718 ORTHO05D008006 2.3e-35 153.3 94 81.9
Aqoxy5G00099 Aquilegia oxysepala HOM05D001718 ORTHO05D008006 3.0e-35 152.9 102 77.5
Gohir.A09G230100 Gossypium hirsutum HOM05D001718 ORTHO05D008006 3.0e-35 152.9 105 74.3
Gohir.D09G231200 Gossypium hirsutum HOM05D001718 ORTHO05D008006 3.0e-35 152.9 105 74.3
Medtr1g073130 Medicago truncatula HOM05D001718 ORTHO05D008006 3.0e-35 152.9 105 75.2
Sc13g0003030 Simmondsia chinensis HOM05D001718 ORTHO05D008006 3.9e-35 152.5 100 75.0
unitig_744.g24611 Utricularia gibba HOM05D001718 ORTHO05D008006 3.9e-35 152.5 100 77.0
COL.COLO4_16000 Corchorus olitorius HOM05D001718 ORTHO05D008006 5.0e-35 152.1 136 61.8
Phvul.L001972 Phaseolus vulgaris HOM05D001718 ORTHO05D008006 5.0e-35 152.1 105 74.3
Potri.008G173900 Populus trichocarpa HOM05D001718 ORTHO05D008006 5.0e-35 152.1 112 73.2
Cpa.g.sc59.36 Carica papaya HOM05D001718 ORTHO05D008006 6.6e-35 151.8 106 72.6
Sabra08G0132700 Salix brachista HOM05D001718 ORTHO05D008006 6.6e-35 151.8 112 73.2
MSTRG.9844 Avicennia marina HOM05D001718 ORTHO05D008006 8.6e-35 151.4 99 74.7
Aa31LG6G490 Aethionema arabicum HOM05D001718 ORTHO05D008006 1.1e-34 151.0 106 72.6
ATR0723G067 Amborella trichopoda HOM05D001718 ORTHO05D008006 1.1e-34 151.0 100 75.0
Duzib151G0805 Durio zibethinus HOM05D001718 ORTHO05D008006 1.1e-34 151.0 106 72.6
Ciclev10004718m.g Citrus clementina HOM05D001718 ORTHO05D008006 1.5e-34 150.6 106 72.6
Gorai.006G253900 Gossypium raimondii HOM05D001718 ORTHO05D008006 1.9e-34 150.2 105 73.3
MD13G1225700 Malus domestica HOM05D001718 ORTHO05D008006 1.9e-34 150.2 98 75.5
DCAR_002290 Daucus carota HOM05D001718 ORTHO05D008006 3.3e-34 149.4 94 78.7
Lsat_1_v5_gn_1_76140 Lactuca sativa HOM05D001718 ORTHO05D008006 3.3e-34 149.4 117 66.7
Carub.0007s2362 Capsella rubella HOM05D001718 ORTHO05D008006 4.3e-34 149.1 98 75.5
SMO201G0124 Selaginella moellendorffii HOM05D001718 ORTHO05D008006 4.3e-34 149.1 76 92.1
Cc03_g06820 Coffea canephora HOM05D001718 ORTHO05D008006 7.3e-34 148.3 98 76.5
MD16G1230600 Malus domestica HOM05D001718 ORTHO05D008006 7.3e-34 148.3 98 75.5
Pp3c9_5260 Physcomitrium patens HOM05D001718 ORTHO05D008006 7.3e-34 148.3 101 72.3
AagrBONN_evm.TU.Sc2ySwM_117.3304 Anthoceros agrestis HOM05D001718 ORTHO05D008006 9.5e-34 147.9 166 52.4
Lj6A639G39 Lonicera japonica HOM05D001718 ORTHO05D008006 9.5e-34 147.9 77 89.6
CARHR224460 Cardamine hirsuta HOM05D001718 ORTHO05D008006 1.2e-33 147.5 106 71.7
vmacro00532 Vaccinium macrocarpon HOM05D001718 ORTHO05D008006 1.6e-33 147.1 130 61.5
EL10Ac3g06717 Beta vulgaris HOM05D001718 ORTHO05D008006 2.1e-33 146.7 110 68.2
SalBow2G0821 Salvia bowleyana HOM05D001718 ORTHO05D008006 2.1e-33 146.7 106 72.6
Sp7g16370 Schrenkiella parvula HOM05D001718 ORTHO05D008006 2.8e-33 146.4 106 70.8
BcaC06g33587 Brassica carinata HOM05D001718 ORTHO05D008006 3.6e-33 146.0 106 70.8
BcaNung04036 Brassica carinata HOM05D001718 ORTHO05D008006 3.6e-33 146.0 106 70.8
BolC7t45413H Brassica oleracea HOM05D001718 ORTHO05D008006 3.6e-33 146.0 106 70.8
HPP92_022078 Vanilla planifolia HOM05D001718 ORTHO05D008006 3.6e-33 146.0 102 69.6
Lalb_Chr06g0169581 Lupinus albus HOM05D001718 ORTHO05D008006 4.7e-33 145.6 98 77.6
Haze_11496 Corylus avellana HOM05D001718 ORTHO05D008006 1.8e-32 143.7 124 63.7
Mapoly0016s0103 Marchantia polymorpha HOM05D001718 ORTHO05D008006 1.8e-32 143.7 86 79.1
THA.LOC104826103 Tarenaya hassleriana HOM05D001718 ORTHO05D008006 4.0e-32 142.5 74 89.2
Thhalv10024882m.g Eutrema salsugineum HOM05D001718 ORTHO05D008006 2.0e-31 140.2 128 60.9
A03p50680 Brassica napus HOM05D001718 ORTHO05D008006 3.4e-31 139.4 83 79.5
C07p49070 Brassica napus HOM05D001718 ORTHO05D008006 3.4e-31 139.4 83 79.5
BraA03t14160Z Brassica rapa HOM05D001718 ORTHO05D008006 3.4e-31 139.4 83 79.5
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 4.4e-31 139.0 80 81.2
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 9.8e-31 137.9 80 80.0
CBR_g4874 Chara braunii HOM05D001718 ORTHO05D008006 1.2e-28 131.0 96 64.6
MCO05G268 Micromonas commoda HOM05D001718 ORTHO05D008006 6.2e-25 118.6 91 59.3
CDE11G0512 Ceratophyllum demersum HOM05D001718 ORTHO05D008006 1.8e-24 117.1 95 67.4
Cre10.g420550 Chlamydomonas reinhardtii HOM05D001718 ORTHO05D008006 5.2e-24 115.5 77 70.1
Rhsim09G0043700 Rhododendron simsii HOM05D001718 ORTHO05D008006 9.9e-23 111.3 81 70.4
Sopen00g008730 Solanum pennellii HOM05D001718 ORTHO05D008006 2.2e-22 110.2 74 74.3
PRCOL_00002285 Prasinoderma coloniale HOM05D001718 ORTHO05D008006 1.9e-21 107.1 100 55.0
Glyma.10G191333 Glycine max HOM05D001718 ORTHO05D008006 1.4e-08 64.3 35 82.9
Mapoly0051s0032 Marchantia polymorpha HOM05D001718 ORTHO05D009127 3.4e-07 59.7 82 39.0
Pp3c16_16750 Physcomitrium patens HOM05D001718 ORTHO05D009127 3.4e-07 59.7 69 40.6
PRCOL_00004096 Prasinoderma coloniale HOM05D001718 ORTHO05D009127 3.4e-07 59.7 69 40.6
SEGI_21132 Sequoiadendron giganteum HOM05D001718 ORTHO05D009127 3.4e-07 59.7 80 37.5
BraA09t40507Z Brassica rapa HOM05D001718 ORTHO05D007949 4.4e-07 59.3 118 30.5
AT3G57680 Arabidopsis thaliana HOM05D001718 ORTHO05D007949 7.6e-07 58.5 118 29.7
Mapoly0039s0084 Marchantia polymorpha HOM05D001718 ORTHO05D007949 7.6e-07 58.5 89 39.3
BcaC07g40148 Brassica carinata HOM05D001718 ORTHO05D007949 1.3e-06 57.8 170 27.1
Thhalv10005897m.g Eutrema salsugineum HOM05D001718 ORTHO05D007949 1.3e-06 57.8 118 29.7
Lsat_1_v5_gn_8_80041 Lactuca sativa HOM05D001718 ORTHO05D007949 1.3e-06 57.8 69 36.2
BcaC07g40353 Brassica carinata HOM05D001718 ORTHO05D007949 1.7e-06 57.4 118 29.7
A09p50530 Brassica napus HOM05D001718 ORTHO05D007949 1.7e-06 57.4 118 29.7
C08p33260 Brassica napus HOM05D001718 ORTHO05D007949 1.7e-06 57.4 118 29.7
BolC8t50928H Brassica oleracea HOM05D001718 ORTHO05D007949 1.7e-06 57.4 118 29.7
CARHR167880 Cardamine hirsuta HOM05D001718 ORTHO05D007949 1.7e-06 57.4 119 29.4
Manes.09G029500 Manihot esculenta HOM05D001718 ORTHO05D007949 1.7e-06 57.4 69 36.2
SGA_v2.0_scaffold105G30454 Striga asiatica HOM05D001718 ORTHO05D007949 1.7e-06 57.4 69 37.7
PGSC0003DMG400033928 Solanum tuberosum HOM05D001718 ORTHO05D007949 2.2e-06 57.0 114 27.2
THA.LOC104819007 Tarenaya hassleriana HOM05D001718 ORTHO05D007949 2.2e-06 57.0 69 37.7
Lsat_1_v5_gn_2_4801 Lactuca sativa HOM05D001718 ORTHO05D007949 2.9e-06 56.6 94 26.6
Medtr8g088150 Medicago truncatula HOM05D001718 ORTHO05D009127 2.9e-06 56.6 117 29.9
Pp3c12_26230 Physcomitrium patens HOM05D001718 ORTHO05D007949 2.9e-06 56.6 116 35.3
Potri.006G055400 Populus trichocarpa HOM05D001718 ORTHO05D007949 2.9e-06 56.6 69 36.2
Sabra06G0039300 Salix brachista HOM05D001718 ORTHO05D007949 2.9e-06 56.6 69 36.2
Sp5g04950 Schrenkiella parvula HOM05D001718 ORTHO05D007949 2.9e-06 56.6 69 36.2
MSTRG.6454 Avicennia marina HOM05D001718 ORTHO05D007949 3.8e-06 56.2 69 34.8
CBR_g38981 Chara braunii HOM05D001718 ORTHO05D009127 3.8e-06 56.2 84 32.1
Duzib093G0858 Durio zibethinus HOM05D001718 ORTHO05D007949 3.8e-06 56.2 115 31.3
Solyc03g059260.4 Solanum lycopersicum HOM05D001718 ORTHO05D007949 3.8e-06 56.2 114 27.2
Sopen03g013610 Solanum pennellii HOM05D001718 ORTHO05D007949 3.8e-06 56.2 114 27.2
VMungo0720G1950 Vigna mungo HOM05D001718 ORTHO05D007949 3.8e-06 56.2 69 34.8
AL5G39300 Arabidopsis lyrata HOM05D001718 ORTHO05D007949 4.9e-06 55.8 118 28.8
Haze_19914 Corylus avellana HOM05D001718 ORTHO05D007949 4.9e-06 55.8 163 29.4
Dinv24121 Davidia involucrata HOM05D001718 ORTHO05D007949 4.9e-06 55.8 142 26.8
Duzib106G1478 Durio zibethinus HOM05D001718 ORTHO05D007949 4.9e-06 55.8 145 26.2
Nitab4.5_0008782g0050 Nicotiana tabacum HOM05D001718 ORTHO05D009127 4.9e-06 55.8 86 33.7
SEGI_38104 Sequoiadendron giganteum HOM05D001718 ORTHO05D007949 4.9e-06 55.8 107 28.0
Cfa016868 Carpinus fangiana HOM05D001718 ORTHO05D007949 6.4e-06 55.5 126 29.4
HanXRQChr05g0132201 Helianthus annuus HOM05D001718 ORTHO05D007949 6.4e-06 55.5 111 30.6
Medtr1g052135 Medicago truncatula HOM05D001718 ORTHO05D007949 6.4e-06 55.5 69 34.8
SalBow6G4514 Salvia bowleyana HOM05D001718 ORTHO05D007949 6.4e-06 55.5 117 30.8
TPR.G22782 Trifolium pratense HOM05D001718 ORTHO05D007949 6.4e-06 55.5 69 34.8
arahy.Tifrunner.gnm1.ann1.5NB5PV Arachis hypogaea HOM05D001718 ORTHO05D007949 8.4e-06 55.1 69 33.3
arahy.Tifrunner.gnm1.ann1.Q9AIC8 Arachis hypogaea HOM05D001718 ORTHO05D007949 8.4e-06 55.1 69 33.3
AUR62027567 Chenopodium quinoa HOM05D001718 ORTHO05D009127 8.4e-06 55.1 69 37.7
Cc06_g16540 Coffea canephora HOM05D001718 ORTHO05D007949 8.4e-06 55.1 69 34.8
Migut.J01789 Erythranthe guttata HOM05D001718 ORTHO05D007949 8.4e-06 55.1 112 31.2
Nitab4.5_0000452g0010 Nicotiana tabacum HOM05D001718 ORTHO05D007949 8.4e-06 55.1 69 31.9
Nitab4.5_0002861g0040 Nicotiana tabacum HOM05D001718 ORTHO05D007949 8.4e-06 55.1 69 31.9
Os06g0318600 Oryza sativa ssp. japonica HOM05D001718 ORTHO05D007949 8.4e-06 55.1 69 34.8
Phvul.007G255600 Phaseolus vulgaris HOM05D001718 ORTHO05D007949 8.4e-06 55.1 120 27.5
Psat6g123600 Pisum sativum HOM05D001718 ORTHO05D007949 8.4e-06 55.1 69 34.8


User provided reference genes

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