Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 5.6e-123 444.5 261 100.0
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 3.2e-94 349.0 268 80.6
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.5e-83 313.5 263 74.9
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 5.9e-64 248.4 250 56.8
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.1e-62 244.2 252 54.8
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 2.5e-62 243.0 255 54.9
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.2e-62 242.7 252 54.8
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 4.2e-62 242.3 255 53.7
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 5.5e-62 241.9 253 54.9
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 9.4e-62 241.1 250 54.4
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.2e-61 240.7 252 54.4
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.2e-61 240.7 249 54.6
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.2e-61 240.7 252 53.6
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.6e-61 240.4 267 59.2
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 3.6e-61 239.2 252 53.6
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 8.0e-61 238.0 252 54.0
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 8.0e-61 238.0 252 54.0
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.0e-60 237.7 253 54.2
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.4e-60 237.3 250 55.2
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.8e-60 236.9 251 53.4
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.8e-60 236.9 252 54.8
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.3e-60 236.5 255 54.9
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 5.2e-60 235.3 252 52.8
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 5.2e-60 235.3 249 52.2
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 5.2e-60 235.3 249 54.2
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 8.8e-60 234.6 251 53.0
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.1e-59 234.2 256 54.7
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.1e-59 234.2 256 54.7
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.1e-59 234.2 255 54.1
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.1e-59 234.2 252 52.8
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.5e-59 233.8 252 53.6
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.5e-59 233.8 252 51.6
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.0e-59 233.4 269 51.7
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.0e-59 233.4 250 53.6
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.6e-59 233.0 177 66.1
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.6e-59 233.0 250 53.2
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 3.3e-59 232.6 253 51.8
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 3.3e-59 232.6 264 53.0
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 4.4e-59 232.3 251 51.4
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 4.4e-59 232.3 253 52.2
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 4.4e-59 232.3 258 53.1
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 4.4e-59 232.3 253 52.2
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 5.7e-59 231.9 254 53.1
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 5.7e-59 231.9 251 55.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 7.5e-59 231.5 250 51.2
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 9.7e-59 231.1 249 49.8
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 9.7e-59 231.1 257 52.1
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 9.7e-59 231.1 251 51.4
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 9.7e-59 231.1 252 52.8
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.3e-58 230.7 253 52.6
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.3e-58 230.7 256 56.2
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.7e-58 230.3 254 52.4
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.7e-58 230.3 253 51.8
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 2.2e-58 229.9 250 51.2
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.8e-58 229.6 254 52.0
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 2.8e-58 229.6 255 53.7
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 4.8e-58 228.8 200 62.5
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.8e-58 228.8 252 54.4
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 4.8e-58 228.8 260 51.9
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.3e-58 228.4 254 51.6
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 6.3e-58 228.4 249 53.0
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 8.2e-58 228.0 252 50.4
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 8.2e-58 228.0 260 51.5
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.1e-57 227.6 252 54.4
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-57 227.6 252 54.4
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-57 227.6 252 54.4
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.1e-57 227.6 252 54.4
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.1e-57 227.6 258 50.8
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.8e-57 226.9 254 51.2
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.8e-57 226.9 251 50.6
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.8e-57 226.9 177 64.4
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.4e-57 226.5 252 54.4
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.4e-57 226.5 253 52.2
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.1e-57 226.1 252 50.0
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 3.1e-57 226.1 250 52.4
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 3.1e-57 226.1 248 52.0
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 5.3e-57 225.3 255 52.5
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 7.0e-57 224.9 250 52.8
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 7.0e-57 224.9 252 50.0
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.0e-56 223.4 251 49.4
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.0e-56 223.4 250 48.8
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.0e-56 223.4 250 50.0
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.7e-56 223.0 261 51.0
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.5e-56 222.6 251 53.0
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.5e-56 222.6 252 51.2
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.5e-56 222.2 250 52.8
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 4.5e-56 222.2 252 52.4
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 7.7e-56 221.5 251 51.4
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 7.7e-56 221.5 253 50.2
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 1.3e-55 220.7 249 49.4
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.7e-55 220.3 255 50.6
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.2e-55 219.9 174 65.5
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 5.0e-55 218.8 252 49.6
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.0e-55 218.8 251 48.2
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 5.0e-55 218.8 252 50.8
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.1e-54 217.6 251 50.2
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.5e-54 217.2 252 49.6
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.9e-54 216.9 253 49.0
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.9e-54 216.9 250 56.4
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.9e-54 216.9 250 56.4
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.9e-54 216.9 250 56.4
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.9e-54 216.9 254 49.2
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.9e-54 216.9 252 54.4
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.2e-54 216.1 249 49.4
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 3.2e-54 216.1 255 50.6
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 3.2e-54 216.1 252 49.2
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.2e-54 215.7 250 50.0
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 4.2e-54 215.7 250 50.4
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 4.2e-54 215.7 252 49.2
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 4.2e-54 215.7 256 50.8
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 5.5e-54 215.3 250 48.0
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 7.2e-54 214.9 249 48.6
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 9.4e-54 214.5 265 49.4
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.6e-53 213.8 250 49.2
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.6e-53 213.8 236 54.2
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.6e-53 213.8 262 51.5
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.7e-53 213.0 250 49.2
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 2.7e-53 213.0 243 52.3
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 4.7e-53 212.2 250 56.0
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.0e-52 211.1 234 53.0
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.8e-52 210.3 249 50.2
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.0e-52 209.5 249 47.8
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 4.0e-52 209.1 252 49.2
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 4.0e-52 209.1 245 50.2
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 8.8e-52 208.0 271 46.5
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.5e-51 207.2 142 71.1
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 3.4e-51 206.1 258 48.4
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 4.4e-51 205.7 246 50.0
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.7e-51 205.3 151 68.9
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.7e-50 203.8 237 48.9
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 2.2e-50 203.4 238 49.6
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 2.8e-50 203.0 312 41.3
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.8e-50 202.2 228 50.9
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 8.3e-50 201.4 253 47.4
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.4e-49 200.7 237 48.5
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 5.9e-48 195.3 259 46.3
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 5.9e-48 195.3 136 70.6
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.3e-47 194.1 322 40.1
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.7e-45 185.7 237 47.3
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.5e-43 180.6 238 45.4
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 2.6e-43 179.9 277 41.5
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.1e-41 172.6 159 57.2
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.0e-41 171.8 158 57.0
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 9.2e-41 171.4 181 52.5
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.0e-40 170.2 128 64.8
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 9.5e-38 161.4 241 40.7
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 4.7e-37 159.1 117 67.5
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 3.0e-36 156.4 112 67.0
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 2.7e-32 143.3 263 36.5
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 2.3e-31 140.2 190 42.6
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 6.6e-31 138.7 263 37.6
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.0e-29 131.7 114 61.4
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 2.4e-25 120.2 99 54.5
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 3.3e-22 109.8 95 55.8
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.8e-20 104.0 91 51.6
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 3.2e-17 93.2 123 36.6
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 9.2e-17 91.7 68 63.2
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 3.6e-13 79.7 93 40.9
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.1e-09 68.2 128 37.5
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 7.1e-09 65.5 161 32.9
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.2e-08 64.7 81 46.9


User provided reference genes

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