Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 8.4e-143 510.8 344 100.0
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 1.0e-71 274.6 300 75.7
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 1.5e-67 260.8 286 77.3
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 7.3e-54 215.3 358 59.2
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 5.2e-52 209.1 357 60.2
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 5.2e-52 209.1 359 61.3
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 1.2e-51 208.0 357 57.4
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 5.8e-51 205.7 358 58.1
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 5.8e-51 205.7 358 58.4
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 4.9e-50 202.6 352 58.8
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 4.9e-50 202.6 356 58.7
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 6.4e-50 202.2 347 59.4
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.1e-49 201.4 359 58.5
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 2.4e-49 200.3 358 58.9
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 4.1e-49 199.5 347 49.9
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.2e-48 198.0 377 57.3
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 1.6e-48 197.6 357 58.5
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.1e-48 197.2 357 58.5
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 2.7e-48 196.8 359 57.4
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 7.8e-48 195.3 359 58.5
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 7.8e-48 195.3 359 58.5
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 7.8e-48 195.3 356 59.0
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.0e-47 194.9 347 58.8
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.7e-47 194.1 359 59.3
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 3.9e-47 193.0 342 59.9
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 6.6e-47 192.2 358 57.3
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 6.6e-47 192.2 360 56.9
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 6.6e-47 192.2 348 58.0
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 8.6e-47 191.8 358 55.9
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.5e-46 191.0 357 55.7
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.9e-46 190.7 362 56.1
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 2.5e-46 190.3 366 56.8
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 2.5e-46 190.3 359 56.5
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 2.5e-46 190.3 360 55.6
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 3.3e-46 189.9 363 57.3
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 4.3e-46 189.5 359 56.0
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 4.3e-46 189.5 357 56.9
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 5.6e-46 189.1 359 56.0
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 9.5e-46 188.3 332 59.0
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 1.2e-45 188.0 358 57.3
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.2e-45 188.0 357 58.0
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 2.1e-45 187.2 359 48.7
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.8e-45 186.8 359 55.7
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 3.6e-45 186.4 344 57.6
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 4.7e-45 186.0 356 58.4
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 4.7e-45 186.0 347 55.9
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 6.2e-45 185.7 360 56.9
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 6.2e-45 185.7 342 58.5
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 1.1e-44 184.9 329 58.1
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.3e-44 183.7 362 57.2
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.3e-44 183.7 362 57.2
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 2.3e-44 183.7 354 55.9
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.3e-44 183.7 356 57.6
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 4.0e-44 183.0 357 55.7
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 5.2e-44 182.6 368 40.2
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 6.8e-44 182.2 338 58.9
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 6.8e-44 182.2 359 40.4
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 2.0e-43 180.6 345 57.7
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 2.6e-43 180.3 386 43.0
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 4.4e-43 179.5 359 48.7
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 5.8e-43 179.1 354 55.9
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 7.6e-43 178.7 358 55.6
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 9.9e-43 178.3 367 55.0
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 1.7e-42 177.6 336 56.8
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 2.2e-42 177.2 338 58.3
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 2.9e-42 176.8 341 57.2
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 6.4e-42 175.6 295 63.4
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 8.4e-42 175.3 341 57.5
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.1e-41 174.9 359 56.0
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 7.1e-41 172.2 242 69.4
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 7.1e-41 172.2 354 55.1
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 7.1e-41 172.2 364 55.5
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 9.2e-41 171.8 259 68.3
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 2.7e-40 170.2 338 55.9
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 2.7e-40 170.2 340 55.6
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 3.5e-40 169.9 357 56.6
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 4.6e-40 169.5 324 58.0
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 7.8e-40 168.7 370 54.3
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 1.0e-39 168.3 321 58.9
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 1.0e-39 168.3 362 55.5
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.7e-39 167.5 355 54.1
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 1.7e-39 167.5 364 54.1
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 3.0e-39 166.8 363 55.4
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 8.6e-39 165.2 249 67.5
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 8.6e-39 165.2 249 67.5
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 8.6e-39 165.2 316 59.2
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.1e-38 164.9 249 67.5
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 1.1e-38 164.9 246 69.1
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 1.5e-38 164.5 245 69.0
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.9e-38 164.1 349 54.7
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 1.9e-38 164.1 249 68.7
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.9e-38 164.1 358 56.4
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 2.5e-38 163.7 369 56.1
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 5.6e-38 162.5 367 53.7
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 9.6e-38 161.8 342 55.6
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 1.2e-37 161.4 346 35.3
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 1.2e-37 161.4 284 63.4
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 8.1e-37 158.7 340 55.6
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 1.1e-36 158.3 245 67.3
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 2.4e-36 157.1 355 54.9
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 6.8e-36 155.6 308 59.4
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.2e-35 154.8 366 53.8
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.2e-35 154.8 366 53.8
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.2e-35 154.8 359 51.0
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.5e-35 154.5 352 45.7
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 7.6e-35 152.1 355 51.8
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 4.9e-34 149.4 345 53.3
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 1.1e-33 148.3 366 52.5
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 7.1e-33 145.6 351 44.7
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.2e-32 144.8 356 53.7
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.2e-32 144.8 333 45.3
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 1.6e-32 144.4 471 29.3
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.1e-32 144.1 109 78.0
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 1.3e-31 141.4 343 53.1
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.9e-30 137.5 109 77.1
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 4.3e-30 136.3 348 53.2
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 9.6e-30 135.2 109 75.2
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.1e-29 134.0 321 53.3
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 1.3e-26 124.8 245 62.4
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 1.7e-26 124.4 256 62.5
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 6.4e-26 122.5 277 59.9
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 1.9e-25 120.9 109 67.9
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 4.2e-25 119.8 263 57.8
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 6.0e-24 115.9 247 61.1
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 4.0e-20 103.2 276 54.0
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 7.6e-19 99.0 230 54.8
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 9.9e-19 98.6 162 38.9
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 8.4e-18 95.5 109 61.5
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 6.0e-16 89.4 145 42.8
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 9.6e-14 82.0 135 44.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.6e-13 81.3 67 56.7
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 1.4e-12 78.2 84 69.0
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 6.9e-12 75.9 56 62.5
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 2.0e-11 74.3 170 37.1
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 3.4e-11 73.6 56 60.7
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 9.3e-09 65.5 163 36.8
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 4.6e-08 63.2 54 57.4


User provided reference genes

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