Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 7.1e-96 354.4 243 100.0
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 3.1e-75 285.8 240 70.4
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 8.3e-36 154.8 154 61.0
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.7e-34 149.8 142 59.9
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 3.5e-34 149.4 142 59.9
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 1.0e-33 147.9 142 58.5
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.2e-31 141.0 146 57.5
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 1.6e-31 140.6 142 54.9
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 8.0e-31 138.3 143 58.0
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 1.0e-30 137.9 131 59.5
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 1.8e-30 137.1 142 58.5
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.8e-30 137.1 143 53.8
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 2.3e-30 136.7 142 53.5
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.0e-30 136.3 144 53.5
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 3.0e-30 136.3 145 55.2
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 5.2e-30 135.6 142 57.0
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 1.5e-29 134.0 142 55.6
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.0e-29 133.7 142 54.9
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 2.0e-29 133.7 209 43.1
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 2.6e-29 133.3 142 54.2
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 3.4e-29 132.9 142 56.3
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 4.4e-29 132.5 142 56.3
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 9.8e-29 131.3 142 52.8
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 9.8e-29 131.3 142 54.2
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 9.8e-29 131.3 216 42.1
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 9.8e-29 131.3 219 41.6
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 1.7e-28 130.6 142 55.6
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.7e-28 130.6 132 59.8
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 2.2e-28 130.2 145 53.8
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 2.2e-28 130.2 142 55.6
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 2.2e-28 130.2 146 53.4
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 2.8e-28 129.8 142 54.9
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 2.8e-28 129.8 142 59.2
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 2.8e-28 129.8 148 53.4
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 3.7e-28 129.4 142 54.9
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.7e-28 129.4 143 53.1
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 4.8e-28 129.0 146 54.1
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 6.3e-28 128.6 146 53.4
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 6.3e-28 128.6 139 56.8
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 8.3e-28 128.3 142 54.9
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 8.3e-28 128.3 143 53.1
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 1.1e-27 127.9 146 50.0
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 1.1e-27 127.9 143 51.0
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 1.1e-27 127.9 146 54.1
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.8e-27 127.1 146 54.1
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 1.8e-27 127.1 142 53.5
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 1.8e-27 127.1 142 52.8
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.8e-27 127.1 143 52.4
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 1.8e-27 127.1 142 53.5
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.4e-27 126.7 142 50.0
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 3.1e-27 126.3 142 52.8
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 3.1e-27 126.3 148 53.4
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 4.1e-27 125.9 140 52.9
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 7.0e-27 125.2 146 53.4
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 7.0e-27 125.2 142 53.5
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 9.1e-27 124.8 142 50.0
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 9.1e-27 124.8 152 53.3
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 9.1e-27 124.8 142 56.3
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 9.1e-27 124.8 143 53.1
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 1.2e-26 124.4 143 54.5
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.2e-26 124.4 142 53.5
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.2e-26 124.4 143 51.7
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 1.6e-26 124.0 142 53.5
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 1.6e-26 124.0 219 40.6
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.6e-26 124.0 209 40.7
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 2.0e-26 123.6 146 52.1
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 2.0e-26 123.6 133 51.9
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 2.7e-26 123.2 142 54.2
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 2.7e-26 123.2 144 50.7
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.7e-26 123.2 142 52.8
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.7e-26 123.2 209 40.2
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 2.7e-26 123.2 142 51.4
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 3.5e-26 122.9 140 52.1
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 4.5e-26 122.5 220 40.0
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 4.5e-26 122.5 140 51.4
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 5.9e-26 122.1 142 52.8
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 7.7e-26 121.7 136 55.1
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 1.0e-25 121.3 146 52.1
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.0e-25 121.3 145 51.0
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.0e-25 121.3 141 51.1
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.0e-25 121.3 142 51.4
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 1.3e-25 120.9 140 50.7
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 1.3e-25 120.9 218 40.8
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 1.3e-25 120.9 146 52.1
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.3e-25 120.9 142 50.0
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 1.7e-25 120.6 142 52.1
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 1.7e-25 120.6 146 52.1
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 1.7e-25 120.6 146 50.0
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 2.3e-25 120.2 147 53.1
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 2.9e-25 119.8 146 49.3
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 3.8e-25 119.4 146 50.0
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 5.0e-25 119.0 142 49.3
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 6.6e-25 118.6 142 52.1
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 6.6e-25 118.6 147 52.4
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 8.6e-25 118.2 141 53.2
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 1.1e-24 117.9 153 50.3
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 1.9e-24 117.1 146 47.3
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.3e-24 116.3 131 51.1
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 3.3e-24 116.3 140 50.7
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 1.2e-23 114.4 142 50.7
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.6e-23 114.0 142 50.0
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 1.6e-23 114.0 146 47.9
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 2.1e-23 113.6 146 47.3
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 2.1e-23 113.6 136 50.0
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.6e-23 112.8 150 46.7
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.7e-23 112.5 149 47.0
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 6.1e-23 112.1 142 50.7
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 8.0e-23 111.7 140 52.1
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 8.0e-23 111.7 149 47.0
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 8.0e-23 111.7 147 49.0
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 1.0e-22 111.3 144 47.9
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.0e-22 111.3 146 47.3
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.0e-22 111.3 142 47.9
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 1.4e-22 110.9 144 47.2
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.4e-22 110.9 141 46.8
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 1.8e-22 110.5 141 48.2
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 4.0e-22 109.4 134 53.0
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 4.0e-22 109.4 142 46.5
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 4.0e-22 109.4 146 46.6
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 5.2e-22 109.0 136 52.2
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 5.7e-21 105.5 137 49.6
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 1.7e-20 104.0 145 46.9
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.2e-20 103.6 142 47.9
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 2.8e-20 103.2 128 53.1
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 2.8e-20 103.2 139 49.6
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 2.8e-20 103.2 128 53.1
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 3.7e-20 102.8 128 53.1
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 3.7e-20 102.8 139 44.6
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 4.9e-20 102.4 147 45.6
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 4.9e-20 102.4 140 50.0
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 4.9e-20 102.4 144 44.4
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 6.3e-20 102.1 140 50.0
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 8.3e-20 101.7 128 52.3
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 8.3e-20 101.7 128 52.3
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 8.3e-20 101.7 137 46.7
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 1.1e-19 101.3 146 45.9
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.1e-19 101.3 139 45.3
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 2.4e-19 100.1 121 53.7
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 9.2e-19 98.2 128 51.6
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 2.0e-18 97.1 136 47.8
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 3.9e-17 92.8 145 41.4
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 1.5e-16 90.9 146 41.8
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 5.6e-16 89.0 151 42.4
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.2e-15 87.8 139 41.0
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 6.1e-15 85.5 126 42.9
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 8.0e-15 85.1 115 43.5
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 6.8e-14 82.0 146 41.8
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 7.5e-13 78.6 70 60.0
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 6.0e-10 68.9 70 55.7
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 3.0e-09 66.6 66 57.6
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.9e-08 63.9 70 52.9
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.8e-06 57.4 52 61.5


User provided reference genes

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