Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 1.1e-136 490.0 240 100.0
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 5.9e-119 431.0 243 86.0
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 5.7e-106 387.9 228 78.5
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 1.6e-103 379.8 226 77.9
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.3e-102 376.7 227 77.1
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 1.7e-102 376.3 230 76.5
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 2.9e-102 375.6 227 76.7
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 2.9e-102 375.6 227 76.7
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.9e-102 375.6 226 77.9
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 2.9e-102 375.6 226 77.9
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 8.5e-102 374.0 234 75.6
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 1.1e-101 373.6 227 78.0
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 1.1e-101 373.6 226 77.0
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.5e-101 373.2 234 75.2
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 1.9e-101 372.9 234 74.8
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.9e-101 372.9 226 76.1
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.5e-101 372.5 234 75.2
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 2.5e-101 372.5 227 75.8
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 2.5e-101 372.5 230 77.0
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 3.2e-101 372.1 226 74.8
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 4.2e-101 371.7 226 75.7
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 7.2e-101 370.9 226 74.3
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 7.2e-101 370.9 226 75.7
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 7.2e-101 370.9 226 74.3
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 7.2e-101 370.9 226 74.8
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 7.2e-101 370.9 234 73.5
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 9.5e-101 370.5 228 75.4
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 9.5e-101 370.5 226 76.5
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 1.2e-100 370.2 226 75.2
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 1.2e-100 370.2 226 75.7
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 1.2e-100 370.2 226 75.2
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 1.2e-100 370.2 226 75.2
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 1.2e-100 370.2 226 75.7
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 1.6e-100 369.8 225 76.4
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 1.6e-100 369.8 234 74.8
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 2.1e-100 369.4 233 72.5
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 2.1e-100 369.4 226 76.5
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 2.1e-100 369.4 225 76.4
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 2.8e-100 369.0 226 73.9
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 2.8e-100 369.0 226 73.9
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 2.8e-100 369.0 226 74.8
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 2.8e-100 369.0 225 76.4
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 3.6e-100 368.6 226 74.3
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 3.6e-100 368.6 225 75.6
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 3.6e-100 368.6 225 76.0
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 3.6e-100 368.6 226 75.2
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 3.6e-100 368.6 232 72.8
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 4.7e-100 368.2 226 73.9
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 4.7e-100 368.2 228 73.7
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 4.7e-100 368.2 226 74.8
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.7e-100 368.2 226 74.8
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.7e-100 368.2 226 74.8
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.7e-100 368.2 226 74.8
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 6.1e-100 367.9 227 74.4
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 6.1e-100 367.9 226 74.8
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 6.1e-100 367.9 228 73.2
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 8.0e-100 367.5 226 74.3
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 1.4e-99 366.7 226 74.3
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 1.8e-99 366.3 227 74.0
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 2.3e-99 365.9 226 74.8
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 2.3e-99 365.9 226 74.8
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 2.3e-99 365.9 226 74.8
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.3e-99 365.9 226 74.3
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 2.3e-99 365.9 225 75.6
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 2.3e-99 365.9 225 74.7
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 3.0e-99 365.5 225 75.1
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 4.0e-99 365.2 226 72.6
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 4.0e-99 365.2 226 74.8
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 5.2e-99 364.8 222 73.9
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 6.8e-99 364.4 226 73.0
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.8e-99 364.0 225 74.2
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 1.2e-98 363.6 225 74.7
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 1.5e-98 363.2 232 72.8
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.5e-98 363.2 225 74.2
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 1.5e-98 363.2 225 74.7
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.0e-98 362.8 231 71.4
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.0e-98 362.8 231 71.4
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 2.0e-98 362.8 226 74.3
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 2.0e-98 362.8 222 75.2
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 4.4e-98 361.7 231 71.9
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 5.7e-98 361.3 227 74.9
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 5.7e-98 361.3 226 73.0
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 9.8e-98 360.5 226 72.1
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 1.3e-97 360.1 232 71.6
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 1.3e-97 360.1 240 71.7
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 2.2e-97 359.4 225 73.8
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 2.8e-97 359.0 225 73.3
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 2.8e-97 359.0 227 74.0
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 4.9e-97 358.2 225 73.3
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 4.9e-97 358.2 222 73.9
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 6.3e-97 357.8 226 71.7
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 8.3e-97 357.5 226 72.6
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 8.3e-97 357.5 226 73.5
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.1e-96 357.1 231 71.9
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.8e-96 356.3 231 73.2
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 5.9e-95 351.3 225 72.9
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 1.3e-94 350.1 230 71.3
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 5.0e-94 348.2 228 71.1
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 5.0e-94 348.2 227 72.2
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.9e-93 346.3 226 69.5
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 2.5e-93 345.9 234 67.1
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 7.3e-93 344.4 224 73.7
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 2.1e-92 342.8 221 73.8
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 2.1e-92 342.8 231 68.4
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 4.7e-92 341.7 231 69.7
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 1.0e-91 340.5 225 70.2
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 5.2e-91 338.2 223 70.0
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 5.7e-90 334.7 221 69.7
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 4.9e-89 331.6 231 66.2
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 8.3e-89 330.9 224 69.6
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.8e-88 329.7 222 69.8
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 4.1e-88 328.6 226 69.0
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 4.1e-88 328.6 220 67.3
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 7.0e-88 327.8 223 68.2
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 1.2e-87 327.0 200 77.5
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 2.0e-87 326.2 221 68.8
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 8.6e-86 320.9 224 65.6
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 4.3e-85 318.5 230 64.3
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 7.3e-85 317.8 220 66.4
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 9.5e-85 317.4 228 65.4
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 2.1e-84 316.2 218 67.0
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 4.0e-83 312.0 220 66.4
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 2.9e-81 305.8 230 63.9
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 8.3e-81 304.3 232 64.7
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 2.3e-78 296.2 217 64.1
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 3.0e-78 295.8 218 64.7
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 3.9e-78 295.4 221 64.3
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 1.6e-76 290.0 228 60.5
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 2.8e-76 289.3 235 59.6
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.1e-75 287.3 235 59.1
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 1.1e-75 287.3 222 61.7
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.4e-75 287.0 226 63.3
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 1.8e-75 286.6 228 62.3
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 2.3e-75 286.2 222 61.7
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 4.4e-74 282.0 172 75.0
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 8.3e-73 277.7 174 71.8
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 2.1e-71 273.1 183 69.4
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 1.0e-70 270.8 172 70.3
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 1.7e-70 270.0 166 72.3
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 6.6e-70 268.1 227 59.5
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 7.3e-69 264.6 226 59.3
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 9.5e-69 264.2 187 66.3
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 1.6e-68 263.5 172 68.6
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 7.8e-63 244.6 224 51.8
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.5e-61 239.6 221 52.9
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 1.2e-60 237.3 226 53.5
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 2.1e-60 236.5 198 62.6
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.8e-59 233.4 173 60.1
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 1.1e-56 224.2 172 58.7
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.9e-56 223.4 206 53.4
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.9e-56 223.4 206 53.4
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.6e-55 220.3 201 53.7
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.6e-55 220.3 201 53.7
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.6e-55 220.3 201 53.7
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 3.9e-54 215.7 226 51.8
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 1.9e-53 213.4 143 69.2
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 9.6e-45 184.5 105 81.0
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 8.1e-44 181.4 114 75.4
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 5.8e-42 175.3 105 74.3
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 4.0e-35 152.5 106 67.9
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 2.1e-31 140.2 94 70.2
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 1.3e-28 131.0 88 63.6
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.1e-27 127.9 88 62.5
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 6.9e-27 125.2 162 43.8
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.6e-23 112.8 103 52.4
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 3.9e-22 109.4 151 44.4
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 3.9e-22 109.4 76 59.2
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 8.2e-20 101.7 55 80.0
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.4e-19 100.9 55 81.8
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 2.4e-19 100.1 64 64.1
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 7.7e-18 95.1 70 61.4
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 4.8e-12 75.9 40 87.5
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 1.8e-06 57.4 45 51.1


User provided reference genes

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