Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 7.6e-278 959.9 498 100.0
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 6.3e-224 780.8 503 81.9
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 3.9e-189 665.2 456 73.5
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 2.3e-186 656.0 512 67.8
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.3e-184 650.2 467 70.9
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 7.8e-182 641.0 455 70.8
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.3e-181 640.2 455 70.8
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 3.0e-181 639.0 490 66.9
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 1.1e-180 637.1 453 70.4
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 1.5e-180 636.7 458 71.4
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 3.3e-180 635.6 455 70.5
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 1.2e-179 633.6 467 70.2
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 4.7e-179 631.7 505 65.5
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 1.4e-178 630.2 455 68.4
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 1.8e-178 629.8 477 68.8
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 2.3e-178 629.4 455 70.3
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 3.1e-178 629.0 450 71.8
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 5.2e-178 628.2 523 63.7
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 8.9e-178 627.5 476 68.1
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 1.5e-177 626.7 453 68.7
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 3.4e-177 625.5 457 70.2
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 4.4e-177 625.2 455 69.9
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 4.4e-177 625.2 492 67.3
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 1.3e-176 623.6 455 69.5
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.9e-176 622.5 451 69.2
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 3.7e-176 622.1 554 60.3
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 4.9e-176 621.7 452 69.2
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 6.4e-176 621.3 468 68.2
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 6.4e-176 621.3 455 69.7
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 8.3e-176 620.9 456 69.7
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 8.3e-176 620.9 446 70.0
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 1.4e-175 620.2 453 69.5
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 3.2e-175 619.0 509 64.6
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 3.2e-175 619.0 512 63.5
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 5.4e-175 618.2 483 66.5
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 9.2e-175 617.5 472 66.3
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 9.2e-175 617.5 452 69.9
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 2.7e-174 615.9 478 67.2
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 2.7e-174 615.9 455 69.2
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 3.5e-174 615.5 457 69.6
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 4.6e-174 615.1 457 68.3
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 4.6e-174 615.1 453 69.1
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 6.0e-174 614.8 513 63.9
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 2.3e-173 612.8 509 65.2
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 2.3e-173 612.8 454 68.7
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 2.3e-173 612.8 454 67.6
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 3.0e-173 612.5 459 67.5
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 5.1e-173 611.7 471 67.7
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 5.1e-173 611.7 508 62.8
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 6.6e-173 611.3 458 68.6
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 8.6e-173 610.9 458 67.7
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 1.1e-172 610.5 505 63.2
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 1.1e-172 610.5 453 68.4
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 3.3e-172 609.0 485 66.4
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 4.3e-172 608.6 499 65.1
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 4.3e-172 608.6 487 64.7
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 9.5e-172 607.4 454 70.3
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 9.5e-172 607.4 452 67.7
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 9.5e-172 607.4 464 67.9
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 9.5e-172 607.4 464 67.9
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 1.2e-171 607.1 458 68.6
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 1.6e-171 606.7 464 66.6
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 1.6e-171 606.7 457 65.6
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.8e-171 605.9 455 66.4
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 2.8e-171 605.9 457 66.1
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 3.6e-171 605.5 455 66.2
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 3.6e-171 605.5 450 68.2
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 1.1e-170 604.0 486 64.0
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 1.4e-170 603.6 455 66.6
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 1.8e-170 603.2 512 61.7
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 2.3e-170 602.8 458 67.2
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 2.3e-170 602.8 502 62.4
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 4.0e-170 602.1 514 60.9
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 4.0e-170 602.1 468 65.8
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 6.8e-170 601.3 502 62.0
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 1.5e-169 600.1 455 67.7
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 2.0e-169 599.7 457 65.0
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 2.6e-169 599.4 497 63.0
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 5.8e-169 598.2 459 66.9
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 7.6e-169 597.8 501 62.5
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 7.6e-169 597.8 501 62.5
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 9.9e-169 597.4 509 62.9
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 9.9e-169 597.4 454 66.7
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 1.7e-168 596.7 497 62.8
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.2e-168 596.3 449 65.9
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 2.9e-168 595.9 497 62.8
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 2.9e-168 595.9 454 66.3
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 3.7e-168 595.5 490 65.3
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 3.7e-168 595.5 504 62.9
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 4.9e-168 595.1 517 61.9
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 6.4e-168 594.7 452 66.8
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 1.1e-167 594.0 497 62.6
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 3.2e-167 592.4 452 66.6
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 5.4e-167 591.7 468 65.4
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 1.6e-166 590.1 507 62.3
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.0e-166 588.2 512 60.9
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 7.8e-166 587.8 468 65.0
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 3.9e-165 585.5 505 61.8
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 1.5e-164 583.6 468 64.7
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 5.6e-164 581.6 463 63.9
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 1.6e-163 580.1 478 62.3
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 6.2e-163 578.2 466 64.4
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 4.0e-162 575.5 464 63.6
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 1.1e-159 567.4 474 59.7
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 1.4e-159 567.0 493 61.7
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 1.3e-155 553.9 461 60.3
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 5.8e-153 545.0 491 58.0
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 3.8e-144 515.8 463 60.5
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 4.9e-144 515.4 310 81.9
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 2.1e-142 510.0 393 65.1
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 1.8e-141 506.9 497 52.5
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 3.9e-141 505.8 502 56.4
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 3.4e-137 492.7 501 53.5
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 5.8e-137 491.9 521 49.9
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 5.3e-130 468.8 478 51.5
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 1.2e-126 457.6 479 55.1
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 4.6e-126 455.7 460 55.2
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.8e-120 436.0 481 50.5
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 1.4e-114 417.5 437 53.8
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 8.8e-109 398.3 311 67.8
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 7.0e-98 362.1 233 74.7
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 3.0e-77 293.5 283 57.2
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 4.4e-76 289.7 450 36.4
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 2.2e-75 287.3 424 42.0
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 7.3e-71 272.3 174 78.2
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 9.2e-66 255.4 399 42.4
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 3.9e-64 250.0 260 55.4
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 7.3e-63 245.7 259 52.9
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 9.2e-58 228.8 359 44.0
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 3.3e-55 220.3 455 31.2
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 4.4e-52 209.9 323 37.2
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.1e-41 174.5 181 51.4
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 5.6e-39 166.4 413 32.0
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 9.6e-39 165.6 131 67.2
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 4.6e-33 146.7 112 63.4
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.7e-27 128.3 96 65.6
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.6e-22 111.7 67 77.6
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 1.1e-21 109.0 78 66.7
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 3.8e-19 100.5 57 86.0
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 3.2e-18 97.4 72 62.5
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 1.9e-15 88.2 86 57.0
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.3e-14 85.5 64 64.1
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 6.3e-14 83.2 68 58.8
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 4.1e-13 80.5 54 66.7
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 4.1e-13 80.5 54 66.7
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 7.6e-12 76.3 62 61.3
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 5.1e-08 63.5 67 56.7


User provided reference genes

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